Wall clock time and date at job start Tue Mar 31 2020 14:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35733 * 117.00047 * 2 1 4 4 C 1.41848 * 126.78568 * 180.02562 * 3 2 1 5 5 C 1.36660 * 103.81348 * 180.02562 * 4 3 2 6 6 C 1.47542 * 126.88254 * 179.97438 * 5 4 3 7 7 O 1.21584 * 119.99733 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00254 * 179.97438 * 6 5 4 9 9 C 1.46498 * 120.00104 * 179.97438 * 8 6 5 10 10 H 1.09006 * 109.46868 * 35.00289 * 9 8 6 11 11 C 1.52996 * 109.47078 * 275.00154 * 9 8 6 12 12 C 1.53000 * 109.46975 * 154.99801 * 9 8 6 13 13 H 1.08998 * 109.49865 * 59.94087 * 12 9 8 14 14 C 1.53047 * 109.49340 * 180.02562 * 12 9 8 15 15 C 1.53043 * 109.53260 * 181.31596 * 14 12 9 16 16 C 1.53190 * 109.31605 * 298.63618 * 15 14 12 17 17 N 1.46923 * 108.89206 * 54.56486 * 16 15 14 18 18 C 1.36934 * 120.62861 * 126.46660 * 17 16 15 19 19 H 1.08003 * 120.00210 * 332.67504 * 18 17 16 20 20 C 1.38817 * 120.00017 * 152.68215 * 18 17 16 21 21 N 1.31623 * 119.99975 * 159.41150 * 20 18 17 22 22 Si 1.86800 * 119.99816 * 339.41170 * 20 18 17 23 23 H 1.48500 * 109.47149 * 92.91771 * 22 20 18 24 24 H 1.48502 * 109.46858 * 212.91507 * 22 20 18 25 25 H 1.48494 * 109.47186 * 332.91535 * 22 20 18 26 26 C 1.46959 * 118.71440 * 306.64127 * 17 16 15 27 27 O 1.34662 * 106.24097 * 0.23705 * 5 4 3 28 28 N 1.20883 * 111.62755 * 359.56665 * 27 5 4 29 29 H 1.09008 * 109.47034 * 299.99958 * 1 2 3 30 30 H 1.09000 * 109.47239 * 59.99367 * 1 2 3 31 31 H 1.08996 * 109.47450 * 179.97438 * 1 2 3 32 32 H 1.08008 * 128.09472 * 0.03887 * 4 3 2 33 33 H 0.96998 * 119.99836 * 359.97438 * 8 6 5 34 34 H 1.08996 * 109.47358 * 60.00346 * 11 9 8 35 35 H 1.09003 * 109.46694 * 180.02562 * 11 9 8 36 36 H 1.08999 * 109.47095 * 299.99556 * 11 9 8 37 37 H 1.08995 * 109.46192 * 61.29928 * 14 12 9 38 38 H 1.08996 * 109.45732 * 301.33733 * 14 12 9 39 39 H 1.09001 * 109.49701 * 178.68255 * 15 14 12 40 40 H 1.09005 * 109.52444 * 58.60866 * 15 14 12 41 41 H 1.09001 * 109.58489 * 174.42434 * 16 15 14 42 42 H 1.08997 * 109.58612 * 294.70483 * 16 15 14 43 43 H 0.96998 * 119.99531 * 179.97438 * 21 20 18 44 44 H 1.09005 * 109.46822 * 293.57356 * 26 17 16 45 45 H 1.09009 * 109.59136 * 173.22013 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4431 1.4505 -0.0005 5 6 3.5391 2.8137 0.0003 6 6 4.7785 3.6141 0.0008 7 8 5.8604 3.0593 0.0009 8 7 4.7115 4.9602 0.0011 9 6 5.9421 5.7549 0.0021 10 1 6.7044 5.2450 -0.5871 11 6 6.4378 5.9256 1.4394 12 6 5.6617 7.1300 -0.6074 13 1 4.8987 7.6399 -0.0193 14 6 6.9473 7.9605 -0.6072 15 6 6.6604 9.3477 -1.1865 16 6 6.1786 9.2028 -2.6335 17 7 5.0297 8.2874 -2.6629 18 6 3.8513 8.6654 -3.2490 19 1 3.5824 9.7104 -3.2962 20 6 3.0022 7.7055 -3.7824 21 7 1.7300 7.9848 -3.9724 22 14 3.6650 6.0176 -4.2307 23 1 3.4830 5.0934 -3.0826 24 1 2.9290 5.4938 -5.4093 25 1 5.1099 6.1237 -4.5565 26 6 5.1687 6.9600 -2.0478 27 8 2.2759 3.2802 0.0066 28 7 1.4686 2.3804 0.0009 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 4.2442 0.7261 -0.0016 33 1 3.8483 5.4028 0.0006 34 1 6.6376 4.9460 1.8736 35 1 7.3533 6.5173 1.4402 36 1 5.6756 6.4356 2.0285 37 1 7.7018 7.4619 -1.2155 38 1 7.3137 8.0622 0.4143 39 1 7.5709 9.9465 -1.1645 40 1 5.8883 9.8377 -0.5933 41 1 5.8790 10.1777 -3.0182 42 1 6.9833 8.7991 -3.2478 43 1 1.1368 7.3141 -4.3455 44 1 5.8903 6.3710 -2.6139 45 1 4.2027 6.4549 -2.0461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025389687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:24 Heat of formation + Delta-G solvation = 16.435662 kcal Electronic energy + Delta-G solvation = -28454.136455 eV Core-core repulsion = 24476.621565 eV Total energy + Delta-G solvation = -3977.514890 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.11235 -40.02079 -39.08602 -38.22400 -35.49851 -33.39795 -33.23110 -32.29841 -31.19578 -30.51090 -28.97868 -27.89895 -25.45735 -24.62913 -23.50364 -23.12521 -22.39297 -20.97386 -20.49203 -19.63955 -18.85018 -18.08437 -17.03135 -16.87849 -16.30822 -16.20260 -15.77815 -15.48295 -15.09630 -14.87833 -14.24707 -14.18045 -13.92595 -13.76454 -13.54250 -13.34799 -12.91038 -12.81454 -12.50069 -12.42062 -12.17651 -12.13786 -11.69818 -11.62949 -11.43857 -11.27820 -10.80140 -10.53798 -10.50189 -10.34953 -10.13720 -10.02874 -9.90774 -9.73235 -9.53848 -9.46020 -9.10796 -8.62964 -6.98970 -5.97407 -3.32934 0.62774 1.92849 2.42851 2.47325 2.90230 3.26472 3.29502 3.47895 3.50094 3.91069 4.49792 4.57138 4.65651 4.78815 4.81223 4.88560 5.01647 5.08601 5.13889 5.20812 5.25322 5.34342 5.42077 5.46975 5.54014 5.59674 5.83082 5.87701 5.95374 6.05297 6.07653 6.23472 6.27676 6.31841 6.38677 6.54400 6.59964 6.67036 6.68351 6.68901 6.95022 7.29272 7.85214 7.94141 7.96842 8.30931 8.92302 9.70020 10.08207 11.18397 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012713 B = 0.004438 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.981326 B = 6307.252210 C = 7923.031070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.282 6.282 3 C 0.201 3.799 4 C -0.157 4.157 5 C -0.055 4.055 6 C 0.606 3.394 7 O -0.514 6.514 8 N -0.701 5.701 9 C 0.144 3.856 10 H 0.091 0.909 11 C -0.162 4.162 12 C -0.114 4.114 13 H 0.081 0.919 14 C -0.102 4.102 15 C -0.135 4.135 16 C 0.146 3.854 17 N -0.605 5.605 18 C -0.260 4.260 19 H 0.086 0.914 20 C 0.026 3.974 21 N -0.906 5.906 22 Si 0.878 3.122 23 H -0.288 1.288 24 H -0.304 1.304 25 H -0.272 1.272 26 C 0.133 3.867 27 O 0.123 5.877 28 N -0.385 5.385 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.190 0.810 33 H 0.412 0.588 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.021 0.979 43 H 0.263 0.737 44 H 0.024 0.976 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.590 -10.065 11.692 16.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.188 6.188 3 C 0.004 3.996 4 C -0.180 4.180 5 C -0.121 4.121 6 C 0.389 3.611 7 O -0.390 6.390 8 N -0.351 5.351 9 C 0.040 3.960 10 H 0.109 0.891 11 C -0.220 4.220 12 C -0.135 4.135 13 H 0.100 0.900 14 C -0.140 4.140 15 C -0.174 4.174 16 C 0.020 3.980 17 N -0.328 5.328 18 C -0.388 4.388 19 H 0.104 0.896 20 C -0.173 4.173 21 N -0.549 5.549 22 Si 0.708 3.292 23 H -0.216 1.216 24 H -0.232 1.232 25 H -0.197 1.197 26 C 0.007 3.993 27 O 0.056 5.944 28 N -0.108 5.108 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.125 0.875 32 H 0.207 0.793 33 H 0.248 0.752 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.039 0.961 43 H 0.072 0.928 44 H 0.042 0.958 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.039 -10.369 11.588 16.066 hybrid contribution 0.068 -1.303 -0.405 1.366 sum 4.107 -11.671 11.184 16.678 Atomic orbital electron populations 1.23114 0.76526 1.04216 1.02656 1.86204 1.22810 1.20331 1.89462 1.21882 0.90609 0.85881 1.01227 1.22136 0.94424 0.94834 1.06575 1.24129 0.87243 0.93904 1.06830 1.16446 0.85029 0.82183 0.77443 1.90855 1.26362 1.71322 1.50489 1.46056 1.11598 1.05044 1.72437 1.21213 0.85720 0.91850 0.97171 0.89095 1.22212 1.01767 1.02159 0.95871 1.22025 0.99026 0.93014 0.99401 0.90032 1.21452 0.96195 0.96144 1.00230 1.21992 1.00215 0.95968 0.99200 1.20953 0.89433 0.94478 0.93149 1.44333 1.10898 1.12878 1.64713 1.18929 0.93523 0.94768 1.31626 0.89617 1.25250 0.95548 0.97650 0.98820 1.69829 1.02787 1.35015 1.47226 0.87045 0.79203 0.85433 0.77505 1.21579 1.23237 1.19665 1.21370 0.99483 0.88393 0.90036 1.85007 1.11735 1.29556 1.68055 1.74028 1.15881 0.96641 1.24257 0.92077 0.91973 0.87500 0.79253 0.75237 0.92337 0.90924 0.92195 0.92341 0.92341 0.92582 0.91918 0.91974 0.96066 0.92757 0.95787 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.73 101.05 1.08 1.35 16 2 O -0.28 -3.43 10.57 -18.91 -0.20 -3.63 16 3 C 0.20 2.79 8.00 -16.72 -0.13 2.66 16 4 C -0.16 -2.08 10.97 -38.77 -0.43 -2.51 16 5 C -0.05 -0.80 7.29 -36.36 -0.26 -1.06 16 6 C 0.61 9.28 7.78 -12.47 -0.10 9.19 16 7 O -0.51 -8.73 16.57 5.29 0.09 -8.64 16 8 N -0.70 -10.25 4.47 -54.85 -0.25 -10.50 16 9 C 0.14 2.02 2.16 -67.93 -0.15 1.88 16 10 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 11 C -0.16 -1.84 9.13 37.16 0.34 -1.50 16 12 C -0.11 -1.79 1.98 -90.50 -0.18 -1.97 16 13 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 14 C -0.10 -1.42 4.85 -26.68 -0.13 -1.55 16 15 C -0.13 -2.02 6.08 -26.61 -0.16 -2.19 16 16 C 0.15 2.75 6.51 -3.71 -0.02 2.73 16 17 N -0.61 -13.86 2.77 -172.29 -0.48 -14.34 16 18 C -0.26 -7.10 10.03 -15.06 -0.15 -7.25 16 19 H 0.09 2.50 8.06 -52.48 -0.42 2.08 16 20 C 0.03 0.75 5.23 -17.43 -0.09 0.66 16 21 N -0.91 -27.39 13.97 55.49 0.78 -26.61 16 22 Si 0.88 22.46 24.35 -169.99 -4.14 18.32 16 23 H -0.29 -7.03 6.62 56.52 0.37 -6.66 16 24 H -0.30 -8.04 7.11 56.52 0.40 -7.63 16 25 H -0.27 -6.93 6.63 56.52 0.37 -6.55 16 26 C 0.13 2.75 3.24 -3.70 -0.01 2.73 16 27 O 0.12 1.90 11.03 15.50 0.17 2.07 16 28 N -0.39 -5.87 11.50 30.47 0.35 -5.51 16 29 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.19 2.09 8.06 -52.48 -0.42 1.66 16 33 H 0.41 5.84 8.25 -40.82 -0.34 5.50 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.73 6.40 -51.93 -0.33 0.40 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.67 6.36 -51.93 -0.33 0.34 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.06 1.18 7.93 -51.93 -0.41 0.76 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.02 0.52 7.07 -51.93 -0.37 0.15 16 45 H 0.07 1.62 4.03 -51.92 -0.21 1.42 16 LS Contribution 363.04 15.07 5.47 5.47 Total: -1.00 -32.22 363.04 -5.24 -37.46 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -6.64 Total: 2.75 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -0.39 Total: 3.16 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.40 Total: -56.96 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.06 Total: -10.20 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.14 Total: 18.32 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.22 -5.24 -37.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025389687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.896 kcal (2) G-P(sol) polarization free energy of solvation -32.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds