Wall clock time and date at job start Tue Mar 31 2020 14:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35733 * 117.00047 * 2 1 4 4 C 1.41848 * 126.78568 * 180.02562 * 3 2 1 5 5 C 1.36660 * 103.81348 * 180.02562 * 4 3 2 6 6 C 1.47542 * 126.88254 * 179.97438 * 5 4 3 7 7 O 1.21584 * 119.99733 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00254 * 179.97438 * 6 5 4 9 9 C 1.46498 * 120.00104 * 179.97438 * 8 6 5 10 10 H 1.09006 * 109.46868 * 35.00289 * 9 8 6 11 11 C 1.52996 * 109.47078 * 275.00154 * 9 8 6 12 12 C 1.53000 * 109.46975 * 154.99801 * 9 8 6 13 13 H 1.08998 * 109.49865 * 59.94087 * 12 9 8 14 14 C 1.53047 * 109.49340 * 180.02562 * 12 9 8 15 15 C 1.53043 * 109.53260 * 181.31596 * 14 12 9 16 16 C 1.53190 * 109.31605 * 298.63618 * 15 14 12 17 17 N 1.46923 * 108.89206 * 54.56486 * 16 15 14 18 18 C 1.36934 * 120.62861 * 126.46660 * 17 16 15 19 19 H 1.08003 * 120.00210 * 332.67504 * 18 17 16 20 20 C 1.38817 * 120.00017 * 152.68215 * 18 17 16 21 21 N 1.31623 * 119.99975 * 159.41150 * 20 18 17 22 22 Si 1.86800 * 119.99816 * 339.41170 * 20 18 17 23 23 H 1.48500 * 109.47149 * 92.91771 * 22 20 18 24 24 H 1.48502 * 109.46858 * 212.91507 * 22 20 18 25 25 H 1.48494 * 109.47186 * 332.91535 * 22 20 18 26 26 C 1.46959 * 118.71440 * 306.64127 * 17 16 15 27 27 O 1.34662 * 106.24097 * 0.23705 * 5 4 3 28 28 N 1.20883 * 111.62755 * 359.56665 * 27 5 4 29 29 H 1.09008 * 109.47034 * 299.99958 * 1 2 3 30 30 H 1.09000 * 109.47239 * 59.99367 * 1 2 3 31 31 H 1.08996 * 109.47450 * 179.97438 * 1 2 3 32 32 H 1.08008 * 128.09472 * 0.03887 * 4 3 2 33 33 H 0.96998 * 119.99836 * 359.97438 * 8 6 5 34 34 H 1.08996 * 109.47358 * 60.00346 * 11 9 8 35 35 H 1.09003 * 109.46694 * 180.02562 * 11 9 8 36 36 H 1.08999 * 109.47095 * 299.99556 * 11 9 8 37 37 H 1.08995 * 109.46192 * 61.29928 * 14 12 9 38 38 H 1.08996 * 109.45732 * 301.33733 * 14 12 9 39 39 H 1.09001 * 109.49701 * 178.68255 * 15 14 12 40 40 H 1.09005 * 109.52444 * 58.60866 * 15 14 12 41 41 H 1.09001 * 109.58489 * 174.42434 * 16 15 14 42 42 H 1.08997 * 109.58612 * 294.70483 * 16 15 14 43 43 H 0.96998 * 119.99531 * 179.97438 * 21 20 18 44 44 H 1.09005 * 109.46822 * 293.57356 * 26 17 16 45 45 H 1.09009 * 109.59136 * 173.22013 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4431 1.4505 -0.0005 5 6 3.5391 2.8137 0.0003 6 6 4.7785 3.6141 0.0008 7 8 5.8604 3.0593 0.0009 8 7 4.7115 4.9602 0.0011 9 6 5.9421 5.7549 0.0021 10 1 6.7044 5.2450 -0.5871 11 6 6.4378 5.9256 1.4394 12 6 5.6617 7.1300 -0.6074 13 1 4.8987 7.6399 -0.0193 14 6 6.9473 7.9605 -0.6072 15 6 6.6604 9.3477 -1.1865 16 6 6.1786 9.2028 -2.6335 17 7 5.0297 8.2874 -2.6629 18 6 3.8513 8.6654 -3.2490 19 1 3.5824 9.7104 -3.2962 20 6 3.0022 7.7055 -3.7824 21 7 1.7300 7.9848 -3.9724 22 14 3.6650 6.0176 -4.2307 23 1 3.4830 5.0934 -3.0826 24 1 2.9290 5.4938 -5.4093 25 1 5.1099 6.1237 -4.5565 26 6 5.1687 6.9600 -2.0478 27 8 2.2759 3.2802 0.0066 28 7 1.4686 2.3804 0.0009 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 4.2442 0.7261 -0.0016 33 1 3.8483 5.4028 0.0006 34 1 6.6376 4.9460 1.8736 35 1 7.3533 6.5173 1.4402 36 1 5.6756 6.4356 2.0285 37 1 7.7018 7.4619 -1.2155 38 1 7.3137 8.0622 0.4143 39 1 7.5709 9.9465 -1.1645 40 1 5.8883 9.8377 -0.5933 41 1 5.8790 10.1777 -3.0182 42 1 6.9833 8.7991 -3.2478 43 1 1.1368 7.3141 -4.3455 44 1 5.8903 6.3710 -2.6139 45 1 4.2027 6.4549 -2.0461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025389687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:23 Heat of formation + Delta-G solvation = -7.832367 kcal Electronic energy + Delta-G solvation = -28455.188796 eV Core-core repulsion = 24476.621565 eV Total energy + Delta-G solvation = -3978.567231 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.20998 -41.22818 -40.01789 -39.62308 -36.86916 -34.91366 -34.42548 -33.61948 -32.73779 -31.98927 -30.20604 -28.68538 -27.13080 -25.88729 -24.60695 -24.42077 -23.93510 -22.16241 -21.67108 -21.02973 -20.03676 -19.19127 -18.79795 -18.04320 -17.57396 -17.41997 -17.05506 -16.68530 -16.19832 -16.01183 -15.88364 -15.48493 -15.29396 -15.08550 -14.82773 -14.72566 -14.51028 -14.09031 -13.87286 -13.61249 -13.30717 -13.23320 -12.99124 -12.79434 -12.66213 -12.62719 -12.50400 -12.10599 -11.92654 -11.70978 -11.58635 -11.52436 -11.24399 -11.19417 -11.12087 -10.65332 -10.57252 -10.27445 -8.90641 -8.18504 -5.47790 -0.49535 0.85998 1.22044 1.35418 1.35685 1.42240 1.47652 1.74053 2.18866 2.36327 2.87621 3.02800 3.32668 3.54078 3.62692 3.80024 3.90986 3.93474 4.00568 4.18407 4.22977 4.31111 4.38481 4.43603 4.49204 4.53169 4.57806 4.64079 4.73671 4.79360 4.89723 5.01187 5.02262 5.13338 5.18105 5.24287 5.28892 5.41132 5.46920 5.64091 5.73199 5.87544 6.12104 6.13218 6.70948 6.83515 6.92806 7.63539 8.04316 9.01284 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012713 B = 0.004438 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.981326 B = 6307.252210 C = 7923.031070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.285 6.285 3 C 0.202 3.798 4 C -0.147 4.147 5 C -0.067 4.067 6 C 0.609 3.391 7 O -0.532 6.532 8 N -0.702 5.702 9 C 0.147 3.853 10 H 0.083 0.917 11 C -0.153 4.153 12 C -0.102 4.102 13 H 0.078 0.922 14 C -0.099 4.099 15 C -0.125 4.125 16 C 0.136 3.864 17 N -0.620 5.620 18 C -0.242 4.242 19 H 0.057 0.943 20 C -0.025 4.025 21 N -0.952 5.952 22 Si 0.933 3.067 23 H -0.275 1.275 24 H -0.318 1.318 25 H -0.269 1.269 26 C 0.130 3.870 27 O 0.109 5.891 28 N -0.402 5.402 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.142 0.858 32 H 0.212 0.788 33 H 0.412 0.588 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.029 0.971 43 H 0.260 0.740 44 H 0.018 0.982 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.736 -11.108 13.494 18.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.192 6.192 3 C 0.005 3.995 4 C -0.170 4.170 5 C -0.133 4.133 6 C 0.392 3.608 7 O -0.410 6.410 8 N -0.352 5.352 9 C 0.043 3.957 10 H 0.102 0.898 11 C -0.211 4.211 12 C -0.122 4.122 13 H 0.097 0.903 14 C -0.137 4.137 15 C -0.164 4.164 16 C 0.011 3.989 17 N -0.344 5.344 18 C -0.372 4.372 19 H 0.074 0.926 20 C -0.220 4.220 21 N -0.598 5.598 22 Si 0.763 3.237 23 H -0.201 1.201 24 H -0.247 1.247 25 H -0.194 1.194 26 C 0.005 3.995 27 O 0.044 5.956 28 N -0.128 5.128 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.160 0.840 32 H 0.229 0.771 33 H 0.248 0.752 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.047 0.953 43 H 0.069 0.931 44 H 0.036 0.964 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.241 -11.400 13.422 18.683 hybrid contribution -0.612 -0.929 -0.976 1.480 sum 5.629 -12.329 12.446 18.401 Atomic orbital electron populations 1.23409 0.74815 1.06480 1.02432 1.86224 1.24504 1.19326 1.89123 1.22091 0.90991 0.86131 1.00318 1.22460 0.94789 0.94687 1.05046 1.24134 0.86950 0.94420 1.07780 1.16462 0.84966 0.82271 0.77087 1.90839 1.26956 1.71637 1.51582 1.46159 1.11997 1.05054 1.72004 1.21249 0.85212 0.90368 0.98877 0.89846 1.22151 1.02800 1.02551 0.93571 1.21858 1.00098 0.94583 0.95683 0.90315 1.21499 0.94997 0.94728 1.02497 1.21893 1.01300 0.97365 0.95801 1.21198 0.88174 0.93128 0.96363 1.44505 1.10727 1.14288 1.64918 1.18904 0.94740 0.93441 1.30141 0.92572 1.25723 0.95637 1.00720 0.99890 1.69940 1.03998 1.36167 1.49692 0.86137 0.78210 0.82380 0.76926 1.20133 1.24720 1.19414 1.21363 0.98308 0.86824 0.93040 1.84984 1.12014 1.29866 1.68775 1.74007 1.16269 0.97210 1.25301 0.91871 0.92628 0.84032 0.77112 0.75175 0.92624 0.88808 0.91342 0.91706 0.88659 0.89207 0.92642 0.92956 0.95255 0.93118 0.96405 0.93346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.73 113.37 1.22 1.59 16 2 O -0.29 -6.52 10.57 -90.56 -0.96 -7.47 16 3 C 0.20 5.41 8.00 85.78 0.69 6.09 16 4 C -0.15 -3.73 10.97 22.79 0.25 -3.48 16 5 C -0.07 -1.91 7.29 24.36 0.18 -1.73 16 6 C 0.61 18.00 7.78 86.70 0.67 18.67 16 7 O -0.53 -17.30 16.57 -3.98 -0.07 -17.36 16 8 N -0.70 -19.71 4.47 -445.70 -1.99 -21.71 16 9 C 0.15 3.76 2.16 44.99 0.10 3.85 16 10 H 0.08 2.31 7.58 -2.38 -0.02 2.29 16 11 C -0.15 -2.94 9.13 71.98 0.66 -2.28 16 12 C -0.10 -2.96 1.98 -10.72 -0.02 -2.98 16 13 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 14 C -0.10 -2.35 4.85 30.62 0.15 -2.20 16 15 C -0.12 -3.33 6.08 30.67 0.19 -3.15 16 16 C 0.14 4.93 6.51 86.36 0.56 5.50 16 17 N -0.62 -28.18 2.77 -699.02 -1.94 -30.12 16 18 C -0.24 -13.53 10.03 84.03 0.84 -12.68 16 19 H 0.06 3.41 8.06 -2.91 -0.02 3.39 16 20 C -0.02 -1.43 5.23 84.86 0.44 -0.99 16 21 N -0.95 -59.56 13.97 21.65 0.30 -59.26 16 22 Si 0.93 47.57 24.35 68.60 1.67 49.24 16 23 H -0.27 -13.19 6.62 99.48 0.66 -12.53 16 24 H -0.32 -16.77 7.11 99.48 0.71 -16.06 16 25 H -0.27 -13.42 6.63 99.48 0.66 -12.76 16 26 C 0.13 5.22 3.24 86.35 0.28 5.50 16 27 O 0.11 3.33 11.03 65.63 0.72 4.06 16 28 N -0.40 -12.13 11.50 -172.02 -1.98 -14.11 16 29 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.21 4.22 8.06 -2.91 -0.02 4.20 16 33 H 0.41 11.50 8.25 -92.71 -0.76 10.74 16 34 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.09 1.42 6.40 -2.39 -0.02 1.40 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.10 1.64 6.36 -2.39 -0.02 1.63 16 39 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 41 H 0.05 1.96 7.93 -2.39 -0.02 1.94 16 42 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 44 H 0.02 0.75 7.07 -2.38 -0.02 0.73 16 45 H 0.05 2.17 4.03 -2.38 -0.01 2.16 16 Total: -1.00 -71.39 363.04 2.12 -69.28 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.15 Total: 15.75 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 6.20 Total: 11.72 kcal Atomic # 7 Polarization: -119.58 SS G_CDS: -5.61 Total: -125.19 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.30 Total: -20.78 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 1.67 Total: 49.24 kcal Total: -71.39 2.12 -69.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025389687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.443 kcal (2) G-P(sol) polarization free energy of solvation -71.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds