Wall clock time and date at job start Tue Mar 31 2020 14:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35733 * 117.00135 * 2 1 4 4 C 1.41849 * 126.78436 * 180.02562 * 3 2 1 5 5 C 1.36663 * 103.81342 * 179.97438 * 4 3 2 6 6 C 1.47536 * 126.88357 * 179.97438 * 5 4 3 7 7 O 1.21582 * 120.00251 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00535 * 179.97438 * 6 5 4 9 9 C 1.46491 * 120.00617 * 179.97438 * 8 6 5 10 10 H 1.09007 * 109.47190 * 324.99971 * 9 8 6 11 11 C 1.52999 * 109.47576 * 84.99765 * 9 8 6 12 12 C 1.53000 * 109.47358 * 205.00299 * 9 8 6 13 13 H 1.08999 * 109.49739 * 299.93030 * 12 9 8 14 14 C 1.53042 * 109.52292 * 179.85175 * 12 9 8 15 15 C 1.53046 * 109.53636 * 178.66180 * 14 12 9 16 16 C 1.52762 * 109.37765 * 61.24308 * 15 14 12 17 17 N 1.46926 * 109.01244 * 305.58424 * 16 15 14 18 18 C 1.36935 * 120.63260 * 233.59040 * 17 16 15 19 19 H 1.07998 * 119.99964 * 152.10930 * 18 17 16 20 20 C 1.38818 * 119.99962 * 332.10221 * 18 17 16 21 21 N 1.31621 * 119.99780 * 335.26864 * 20 18 17 22 22 Si 1.86796 * 119.99944 * 154.99519 * 20 18 17 23 23 H 1.48508 * 109.47191 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47528 * 119.99834 * 22 20 18 25 25 H 1.48507 * 109.46927 * 240.00155 * 22 20 18 26 26 C 1.46923 * 118.73306 * 53.31086 * 17 16 15 27 27 O 1.34659 * 106.23789 * 0.23565 * 5 4 3 28 28 N 1.20873 * 111.63409 * 359.56808 * 27 5 4 29 29 H 1.08997 * 109.47199 * 59.99861 * 1 2 3 30 30 H 1.09000 * 109.47628 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46878 * 300.00553 * 1 2 3 32 32 H 1.08004 * 128.09699 * 359.97155 * 4 3 2 33 33 H 0.97007 * 119.99532 * 0.02562 * 8 6 5 34 34 H 1.09007 * 109.46693 * 59.99901 * 11 9 8 35 35 H 1.08992 * 109.47479 * 180.02562 * 11 9 8 36 36 H 1.09002 * 109.47130 * 300.00933 * 11 9 8 37 37 H 1.08990 * 109.46523 * 298.68262 * 14 12 9 38 38 H 1.09002 * 109.46336 * 58.64808 * 14 12 9 39 39 H 1.08999 * 109.49604 * 181.31494 * 15 14 12 40 40 H 1.09000 * 109.50123 * 301.38654 * 15 14 12 41 41 H 1.09007 * 109.50585 * 185.70374 * 16 15 14 42 42 H 1.09001 * 109.43315 * 65.42700 * 16 15 14 43 43 H 0.97000 * 120.00039 * 353.97832 * 21 20 18 44 44 H 1.08999 * 109.59145 * 66.43478 * 26 17 16 45 45 H 1.09001 * 109.58720 * 186.85599 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4431 1.4504 -0.0005 5 6 3.5391 2.8137 -0.0009 6 6 4.7785 3.6140 -0.0009 7 8 5.8604 3.0593 -0.0002 8 7 4.7116 4.9601 -0.0018 9 6 5.9422 5.7549 -0.0013 10 1 6.7037 5.2451 0.5891 11 6 6.4401 5.9250 -1.4380 12 6 5.6609 7.1301 0.6073 13 1 4.9004 7.6408 0.0166 14 6 6.9468 7.9601 0.6118 15 6 6.6584 9.3475 1.1898 16 6 6.1695 9.2050 2.6300 17 7 5.0210 8.2890 2.6571 18 6 3.8394 8.6685 3.2360 19 1 2.9083 8.2434 2.8914 20 6 3.8385 9.5994 4.2658 21 7 4.9121 9.7579 5.0106 22 14 2.3162 10.6323 4.5896 23 1 1.2553 10.2694 3.6159 24 1 1.8299 10.3784 5.9695 25 1 2.6532 12.0709 4.4404 26 6 5.1625 6.9605 2.0459 27 8 2.2759 3.2801 0.0048 28 7 1.4687 2.3805 -0.0002 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 4.2442 0.7260 -0.0006 33 1 3.8484 5.4028 -0.0020 34 1 5.6786 6.4347 -2.0284 35 1 7.3559 6.5159 -1.4375 36 1 6.6404 4.9452 -1.8716 37 1 7.6989 7.4613 1.2229 38 1 7.3171 8.0616 -0.4084 39 1 7.5693 9.9459 1.1711 40 1 5.8888 9.8375 0.5932 41 1 5.8675 10.1810 3.0101 42 1 6.9725 8.8026 3.2475 43 1 5.6722 9.1659 4.8980 44 1 5.8817 6.3712 2.6147 45 1 4.1964 6.4559 2.0407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025389689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:30 Heat of formation + Delta-G solvation = 7.979851 kcal Electronic energy + Delta-G solvation = -27803.048417 eV Core-core repulsion = 23825.166856 eV Total energy + Delta-G solvation = -3977.881561 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.23067 -40.06912 -39.18795 -38.15306 -35.60283 -33.52456 -33.34267 -32.26476 -30.82297 -30.51407 -28.51077 -27.99378 -25.37059 -24.62139 -23.60704 -22.96902 -22.12771 -21.07345 -20.55164 -19.59045 -18.75191 -18.20415 -17.39023 -17.14138 -16.37029 -16.24422 -15.87952 -15.27430 -14.98071 -14.63364 -14.29260 -14.15892 -13.87767 -13.72589 -13.62844 -13.41233 -12.91905 -12.70557 -12.58937 -12.38083 -12.24032 -11.93433 -11.79374 -11.63125 -11.18094 -10.93409 -10.67659 -10.51119 -10.37223 -10.24824 -10.12888 -10.08305 -9.91937 -9.81566 -9.64500 -9.33503 -9.13472 -8.36604 -6.88989 -6.06695 -3.23733 0.52426 1.82065 2.32893 2.36930 2.81659 3.18414 3.50822 3.53365 3.66672 3.80448 4.46826 4.54743 4.64908 4.71772 4.78794 4.84341 4.91555 5.10978 5.11644 5.25264 5.30178 5.38296 5.42592 5.46354 5.61820 5.67572 5.85909 5.91860 5.98273 6.12810 6.17245 6.26393 6.33191 6.47256 6.49465 6.57302 6.66135 6.69223 6.79882 7.09983 7.20545 7.21698 7.75504 7.88027 7.99910 8.57641 9.11488 9.84306 10.28858 11.21546 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012105 B = 0.003347 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.550030 B = 8364.889806 C =10221.895505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.281 6.281 3 C 0.203 3.797 4 C -0.156 4.156 5 C -0.054 4.054 6 C 0.606 3.394 7 O -0.512 6.512 8 N -0.700 5.700 9 C 0.147 3.853 10 H 0.091 0.909 11 C -0.163 4.163 12 C -0.112 4.112 13 H 0.075 0.925 14 C -0.101 4.101 15 C -0.136 4.136 16 C 0.148 3.852 17 N -0.598 5.598 18 C -0.350 4.350 19 H 0.056 0.944 20 C -0.024 4.024 21 N -0.917 5.917 22 Si 1.068 2.932 23 H -0.292 1.292 24 H -0.294 1.294 25 H -0.290 1.290 26 C 0.156 3.844 27 O 0.121 5.879 28 N -0.388 5.388 29 H 0.060 0.940 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.190 0.810 33 H 0.410 0.590 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.015 0.985 43 H 0.270 0.730 44 H 0.016 0.984 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.471 -14.019 -13.744 19.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.188 6.188 3 C 0.006 3.994 4 C -0.179 4.179 5 C -0.120 4.120 6 C 0.388 3.612 7 O -0.388 6.388 8 N -0.350 5.350 9 C 0.043 3.957 10 H 0.109 0.891 11 C -0.221 4.221 12 C -0.133 4.133 13 H 0.094 0.906 14 C -0.139 4.139 15 C -0.176 4.176 16 C 0.022 3.978 17 N -0.321 5.321 18 C -0.479 4.479 19 H 0.074 0.926 20 C -0.226 4.226 21 N -0.557 5.557 22 Si 0.898 3.102 23 H -0.218 1.218 24 H -0.222 1.222 25 H -0.217 1.217 26 C 0.029 3.971 27 O 0.054 5.946 28 N -0.111 5.111 29 H 0.079 0.921 30 H 0.125 0.875 31 H 0.080 0.920 32 H 0.207 0.793 33 H 0.245 0.755 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.033 0.967 43 H 0.081 0.919 44 H 0.034 0.966 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.489 -13.056 -12.795 18.611 hybrid contribution 0.473 -1.565 -0.898 1.865 sum -3.016 -14.621 -13.693 20.258 Atomic orbital electron populations 1.23115 0.76492 1.04290 1.02590 1.86215 1.22828 1.20346 1.89385 1.21895 0.90635 0.85862 1.01059 1.22161 0.94415 0.94937 1.06369 1.24137 0.87148 0.93877 1.06851 1.16446 0.84981 0.82186 0.77587 1.90875 1.26388 1.71291 1.50272 1.46036 1.11493 1.04941 1.72506 1.21202 0.85608 0.91866 0.97038 0.89058 1.22220 1.01810 1.02093 0.95994 1.21989 0.98982 0.92682 0.99635 0.90642 1.21444 0.96109 0.96425 0.99926 1.21985 0.99930 0.95566 1.00078 1.20886 0.89025 0.95923 0.91970 1.44094 1.11672 1.09740 1.66626 1.20009 0.84812 1.27760 1.15276 0.92595 1.25825 1.03757 1.00993 0.92031 1.70714 1.07352 1.41494 1.36127 0.83494 0.74750 0.76518 0.75442 1.21819 1.22156 1.21687 1.20874 0.98152 0.88298 0.89769 1.84979 1.11773 1.29603 1.68242 1.74017 1.15844 0.96683 1.24528 0.92101 0.87466 0.91984 0.79264 0.75474 0.92336 0.90912 0.92399 0.92481 0.92713 0.92926 0.92373 0.90314 0.96677 0.91935 0.96638 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.73 101.05 1.08 1.31 16 2 O -0.28 -2.99 10.57 -18.91 -0.20 -3.19 16 3 C 0.20 2.42 8.00 -16.72 -0.13 2.29 16 4 C -0.16 -1.78 10.97 -38.77 -0.43 -2.20 16 5 C -0.05 -0.66 7.29 -36.36 -0.26 -0.92 16 6 C 0.61 8.00 7.78 -12.47 -0.10 7.90 16 7 O -0.51 -7.98 16.57 5.29 0.09 -7.89 16 8 N -0.70 -8.68 4.47 -54.85 -0.25 -8.93 16 9 C 0.15 1.91 2.16 -67.94 -0.15 1.77 16 10 H 0.09 1.32 7.58 -51.93 -0.39 0.92 16 11 C -0.16 -1.81 9.14 37.16 0.34 -1.47 16 12 C -0.11 -1.72 1.97 -90.50 -0.18 -1.90 16 13 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 14 C -0.10 -1.52 4.86 -26.69 -0.13 -1.65 16 15 C -0.14 -2.42 6.07 -26.83 -0.16 -2.58 16 16 C 0.15 3.35 4.66 -3.93 -0.02 3.33 16 17 N -0.60 -14.42 2.86 -172.58 -0.49 -14.92 16 18 C -0.35 -9.52 9.49 -15.06 -0.14 -9.66 16 19 H 0.06 1.53 7.94 -52.49 -0.42 1.11 16 20 C -0.02 -0.67 4.69 -17.43 -0.08 -0.75 16 21 N -0.92 -27.19 12.40 55.49 0.69 -26.50 16 22 Si 1.07 25.05 29.99 -169.99 -5.10 19.96 16 23 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 C 0.16 3.08 5.56 -3.71 -0.02 3.06 16 27 O 0.12 1.51 11.03 15.51 0.17 1.68 16 28 N -0.39 -4.97 11.50 30.47 0.35 -4.62 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 32 H 0.19 1.80 8.06 -52.48 -0.42 1.38 16 33 H 0.41 4.66 8.24 -40.82 -0.34 4.32 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.75 6.41 -51.93 -0.33 0.42 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.69 6.37 -51.93 -0.33 0.36 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.08 2.02 6.30 -51.92 -0.33 1.70 16 42 H 0.02 0.35 7.87 -51.93 -0.41 -0.05 16 43 H 0.27 8.07 6.71 -40.82 -0.27 7.80 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.05 1.06 7.43 -51.93 -0.39 0.67 16 LS Contribution 368.39 15.07 5.55 5.55 Total: -1.00 -31.75 368.39 -6.22 -37.96 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.65 Total: 2.38 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -0.38 Total: -1.49 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.30 Total: -54.97 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.06 Total: -9.40 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.10 Total: 19.96 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.75 -6.22 -37.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025389689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.943 kcal (2) G-P(sol) polarization free energy of solvation -31.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds