Wall clock time and date at job start Tue Mar 31 2020 14:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35733 * 117.00135 * 2 1 4 4 C 1.41849 * 126.78436 * 180.02562 * 3 2 1 5 5 C 1.36663 * 103.81342 * 179.97438 * 4 3 2 6 6 C 1.47536 * 126.88357 * 179.97438 * 5 4 3 7 7 O 1.21582 * 120.00251 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00535 * 179.97438 * 6 5 4 9 9 C 1.46491 * 120.00617 * 179.97438 * 8 6 5 10 10 H 1.09007 * 109.47190 * 324.99971 * 9 8 6 11 11 C 1.52999 * 109.47576 * 84.99765 * 9 8 6 12 12 C 1.53000 * 109.47358 * 205.00299 * 9 8 6 13 13 H 1.08999 * 109.49739 * 299.93030 * 12 9 8 14 14 C 1.53042 * 109.52292 * 179.85175 * 12 9 8 15 15 C 1.53046 * 109.53636 * 178.66180 * 14 12 9 16 16 C 1.52762 * 109.37765 * 61.24308 * 15 14 12 17 17 N 1.46926 * 109.01244 * 305.58424 * 16 15 14 18 18 C 1.36935 * 120.63260 * 233.59040 * 17 16 15 19 19 H 1.07998 * 119.99964 * 152.10930 * 18 17 16 20 20 C 1.38818 * 119.99962 * 332.10221 * 18 17 16 21 21 N 1.31621 * 119.99780 * 335.26864 * 20 18 17 22 22 Si 1.86796 * 119.99944 * 154.99519 * 20 18 17 23 23 H 1.48508 * 109.47191 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47528 * 119.99834 * 22 20 18 25 25 H 1.48507 * 109.46927 * 240.00155 * 22 20 18 26 26 C 1.46923 * 118.73306 * 53.31086 * 17 16 15 27 27 O 1.34659 * 106.23789 * 0.23565 * 5 4 3 28 28 N 1.20873 * 111.63409 * 359.56808 * 27 5 4 29 29 H 1.08997 * 109.47199 * 59.99861 * 1 2 3 30 30 H 1.09000 * 109.47628 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46878 * 300.00553 * 1 2 3 32 32 H 1.08004 * 128.09699 * 359.97155 * 4 3 2 33 33 H 0.97007 * 119.99532 * 0.02562 * 8 6 5 34 34 H 1.09007 * 109.46693 * 59.99901 * 11 9 8 35 35 H 1.08992 * 109.47479 * 180.02562 * 11 9 8 36 36 H 1.09002 * 109.47130 * 300.00933 * 11 9 8 37 37 H 1.08990 * 109.46523 * 298.68262 * 14 12 9 38 38 H 1.09002 * 109.46336 * 58.64808 * 14 12 9 39 39 H 1.08999 * 109.49604 * 181.31494 * 15 14 12 40 40 H 1.09000 * 109.50123 * 301.38654 * 15 14 12 41 41 H 1.09007 * 109.50585 * 185.70374 * 16 15 14 42 42 H 1.09001 * 109.43315 * 65.42700 * 16 15 14 43 43 H 0.97000 * 120.00039 * 353.97832 * 21 20 18 44 44 H 1.08999 * 109.59145 * 66.43478 * 26 17 16 45 45 H 1.09001 * 109.58720 * 186.85599 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4431 1.4504 -0.0005 5 6 3.5391 2.8137 -0.0009 6 6 4.7785 3.6140 -0.0009 7 8 5.8604 3.0593 -0.0002 8 7 4.7116 4.9601 -0.0018 9 6 5.9422 5.7549 -0.0013 10 1 6.7037 5.2451 0.5891 11 6 6.4401 5.9250 -1.4380 12 6 5.6609 7.1301 0.6073 13 1 4.9004 7.6408 0.0166 14 6 6.9468 7.9601 0.6118 15 6 6.6584 9.3475 1.1898 16 6 6.1695 9.2050 2.6300 17 7 5.0210 8.2890 2.6571 18 6 3.8394 8.6685 3.2360 19 1 2.9083 8.2434 2.8914 20 6 3.8385 9.5994 4.2658 21 7 4.9121 9.7579 5.0106 22 14 2.3162 10.6323 4.5896 23 1 1.2553 10.2694 3.6159 24 1 1.8299 10.3784 5.9695 25 1 2.6532 12.0709 4.4404 26 6 5.1625 6.9605 2.0459 27 8 2.2759 3.2801 0.0048 28 7 1.4687 2.3805 -0.0002 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 4.2442 0.7260 -0.0006 33 1 3.8484 5.4028 -0.0020 34 1 5.6786 6.4347 -2.0284 35 1 7.3559 6.5159 -1.4375 36 1 6.6404 4.9452 -1.8716 37 1 7.6989 7.4613 1.2229 38 1 7.3171 8.0616 -0.4084 39 1 7.5693 9.9459 1.1711 40 1 5.8888 9.8375 0.5932 41 1 5.8675 10.1810 3.0101 42 1 6.9725 8.8026 3.2475 43 1 5.6722 9.1659 4.8980 44 1 5.8817 6.3712 2.6147 45 1 4.1964 6.4559 2.0407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025389689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:29 Heat of formation + Delta-G solvation = -14.360937 kcal Electronic energy + Delta-G solvation = -27804.017186 eV Core-core repulsion = 23825.166856 eV Total energy + Delta-G solvation = -3978.850331 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.16921 -41.18674 -39.98431 -39.59310 -37.01541 -34.95129 -34.38102 -33.40188 -32.33181 -32.01254 -29.84820 -28.65091 -27.08444 -25.85395 -24.55918 -24.24784 -23.74370 -22.20790 -21.67943 -20.98163 -19.92260 -19.34506 -19.14405 -18.00488 -17.45201 -17.24728 -16.65744 -16.39730 -16.13328 -15.96409 -15.89189 -15.43052 -15.33060 -15.23585 -14.90160 -14.74240 -14.22450 -13.99091 -13.81899 -13.46675 -13.20762 -12.95237 -12.91271 -12.69454 -12.61836 -12.56007 -12.32031 -11.89704 -11.85946 -11.75153 -11.62514 -11.55232 -11.26945 -11.08399 -11.05379 -10.52411 -10.46827 -10.23348 -8.90974 -8.22047 -5.38168 -0.44286 0.90059 1.37970 1.52328 1.59319 1.66805 1.79301 1.82621 2.22155 2.66326 2.91854 3.22390 3.45686 3.58497 3.69275 3.83684 3.94493 3.95204 4.00242 4.21417 4.25242 4.26611 4.38529 4.42663 4.53581 4.56050 4.60836 4.66240 4.78424 4.78938 4.88234 4.97738 5.04940 5.12463 5.22055 5.23022 5.29665 5.40558 5.44097 5.59747 5.77741 5.85983 6.18796 6.40988 6.77903 6.88827 7.08318 7.80327 8.24797 9.01957 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012105 B = 0.003347 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.550030 B = 8364.889806 C =10221.895505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.288 6.288 3 C 0.201 3.799 4 C -0.150 4.150 5 C -0.060 4.060 6 C 0.611 3.389 7 O -0.537 6.537 8 N -0.696 5.696 9 C 0.154 3.846 10 H 0.079 0.921 11 C -0.156 4.156 12 C -0.095 4.095 13 H 0.079 0.921 14 C -0.097 4.097 15 C -0.126 4.126 16 C 0.151 3.849 17 N -0.616 5.616 18 C -0.351 4.351 19 H 0.052 0.948 20 C -0.078 4.078 21 N -0.945 5.945 22 Si 1.116 2.884 23 H -0.272 1.272 24 H -0.294 1.294 25 H -0.287 1.287 26 C 0.154 3.846 27 O 0.116 5.884 28 N -0.401 5.401 29 H 0.062 0.938 30 H 0.139 0.861 31 H 0.058 0.942 32 H 0.207 0.793 33 H 0.415 0.585 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.056 0.944 41 H 0.041 0.959 42 H -0.002 1.002 43 H 0.253 0.747 44 H 0.002 0.998 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.878 -14.679 -15.911 21.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.195 6.195 3 C 0.004 3.996 4 C -0.173 4.173 5 C -0.126 4.126 6 C 0.394 3.606 7 O -0.415 6.415 8 N -0.346 5.346 9 C 0.050 3.950 10 H 0.097 0.903 11 C -0.213 4.213 12 C -0.116 4.116 13 H 0.097 0.903 14 C -0.135 4.135 15 C -0.165 4.165 16 C 0.025 3.975 17 N -0.341 5.341 18 C -0.481 4.481 19 H 0.070 0.930 20 C -0.274 4.274 21 N -0.588 5.588 22 Si 0.942 3.058 23 H -0.197 1.197 24 H -0.221 1.221 25 H -0.214 1.214 26 C 0.028 3.972 27 O 0.050 5.950 28 N -0.125 5.125 29 H 0.081 0.919 30 H 0.157 0.843 31 H 0.076 0.924 32 H 0.224 0.776 33 H 0.252 0.748 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.016 0.984 43 H 0.063 0.937 44 H 0.020 0.980 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.901 -13.733 -14.998 20.707 hybrid contribution 0.563 -1.465 -0.197 1.582 sum -3.338 -15.198 -15.195 21.749 Atomic orbital electron populations 1.23396 0.74813 1.06388 1.02485 1.86227 1.24513 1.19590 1.89121 1.22070 0.90945 0.86115 1.00491 1.22436 0.94762 0.94931 1.05174 1.23978 0.86838 0.94089 1.07687 1.16449 0.84914 0.82217 0.77015 1.90861 1.27317 1.71733 1.51572 1.46014 1.11699 1.04834 1.72051 1.21079 0.85468 0.90130 0.98309 0.90299 1.22164 1.02658 1.02482 0.94041 1.21761 0.99228 0.94343 0.96263 0.90269 1.21455 0.95763 0.94349 1.01931 1.21850 1.00601 0.97829 0.96215 1.20783 0.88079 0.93570 0.95026 1.44347 1.11209 1.11672 1.66848 1.20272 0.85943 1.27209 1.14667 0.92975 1.27142 1.05598 1.02509 0.92135 1.70840 1.07878 1.42127 1.37914 0.82841 0.72233 0.75111 0.75659 1.19659 1.22150 1.21393 1.20998 0.97862 0.86122 0.92195 1.84963 1.11801 1.29673 1.68606 1.73995 1.16142 0.97133 1.25253 0.91918 0.84337 0.92351 0.77600 0.74820 0.91156 0.89518 0.92547 0.92602 0.88779 0.90712 0.92540 0.94055 0.98388 0.93668 0.98020 0.93241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.73 113.37 1.22 1.52 16 2 O -0.29 -5.71 10.57 -90.57 -0.96 -6.67 16 3 C 0.20 4.59 8.00 85.78 0.69 5.27 16 4 C -0.15 -3.26 10.97 22.79 0.25 -3.01 16 5 C -0.06 -1.41 7.29 24.36 0.18 -1.23 16 6 C 0.61 15.54 7.78 86.70 0.67 16.21 16 7 O -0.54 -16.20 16.57 -3.97 -0.07 -16.27 16 8 N -0.70 -16.38 4.47 -445.72 -1.99 -18.37 16 9 C 0.15 3.72 2.16 44.99 0.10 3.82 16 10 H 0.08 2.16 7.58 -2.38 -0.02 2.14 16 11 C -0.16 -2.94 9.14 71.98 0.66 -2.28 16 12 C -0.10 -2.76 1.97 -10.72 -0.02 -2.78 16 13 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 14 C -0.10 -2.67 4.86 30.62 0.15 -2.52 16 15 C -0.13 -4.28 6.07 30.53 0.19 -4.09 16 16 C 0.15 7.00 4.66 86.22 0.40 7.40 16 17 N -0.62 -30.23 2.86 -699.92 -2.00 -32.23 16 18 C -0.35 -19.42 9.49 84.04 0.80 -18.62 16 19 H 0.05 2.87 7.94 -2.91 -0.02 2.85 16 20 C -0.08 -4.42 4.69 84.86 0.40 -4.02 16 21 N -0.95 -57.93 12.40 21.65 0.27 -57.66 16 22 Si 1.12 51.01 29.99 68.60 2.06 53.07 16 23 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 24 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 25 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 26 C 0.15 6.09 5.56 86.36 0.48 6.57 16 27 O 0.12 2.82 11.03 65.67 0.72 3.54 16 28 N -0.40 -9.97 11.50 -172.02 -1.98 -11.95 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 30 H 0.14 0.90 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.21 3.61 8.06 -2.91 -0.02 3.59 16 33 H 0.42 8.93 8.24 -92.70 -0.76 8.17 16 34 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.09 1.41 6.41 -2.39 -0.02 1.40 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.09 1.94 6.37 -2.39 -0.02 1.93 16 39 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.04 2.20 6.30 -2.38 -0.02 2.18 16 42 H 0.00 -0.09 7.87 -2.39 -0.02 -0.11 16 43 H 0.25 15.89 6.71 -92.71 -0.62 15.27 16 44 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 45 H 0.05 1.96 7.43 -2.39 -0.02 1.94 16 Total: -1.00 -70.30 368.39 2.60 -67.70 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.39 Total: 16.59 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 6.15 Total: 2.24 kcal Atomic # 7 Polarization: -114.50 SS G_CDS: -5.70 Total: -120.20 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.30 Total: -19.39 kcal Atomic # 14 Polarization: 51.01 SS G_CDS: 2.06 Total: 53.07 kcal Total: -70.30 2.60 -67.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025389689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.343 kcal (2) G-P(sol) polarization free energy of solvation -70.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds