Wall clock time and date at job start Tue Mar 31 2020 14:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46633 * 2 1 4 4 N 1.46505 * 109.46672 * 119.98983 * 2 1 3 5 5 C 1.34775 * 120.00153 * 275.00294 * 4 2 1 6 6 O 1.21493 * 119.99995 * 0.02562 * 5 4 2 7 7 C 1.48205 * 119.99726 * 180.02562 * 5 4 2 8 8 C 1.36316 * 126.38312 * 179.71102 * 7 5 4 9 9 C 1.42345 * 104.00771 * 179.97438 * 8 7 5 10 10 O 1.21974 * 127.14908 * 180.08718 * 9 8 7 11 11 N 1.34826 * 105.70050 * 0.33632 * 9 8 7 12 12 C 1.46509 * 124.56305 * 179.80417 * 11 9 8 13 13 O 1.20923 * 110.86808 * 359.77998 * 11 9 8 14 14 C 1.52993 * 109.47760 * 239.99226 * 2 1 3 15 15 H 1.08999 * 109.50168 * 184.93234 * 14 2 1 16 16 C 1.53051 * 109.52109 * 64.85373 * 14 2 1 17 17 C 1.53040 * 109.53536 * 178.66961 * 16 14 2 18 18 C 1.52759 * 109.38545 * 61.23641 * 17 16 14 19 19 N 1.46923 * 109.01237 * 305.59084 * 18 17 16 20 20 C 1.36935 * 120.62889 * 233.58434 * 19 18 17 21 21 H 1.07998 * 119.99964 * 152.10883 * 20 19 18 22 22 C 1.38806 * 119.99901 * 332.09815 * 20 19 18 23 23 N 1.31623 * 120.00510 * 335.27507 * 22 20 19 24 24 Si 1.86803 * 120.00033 * 154.99824 * 22 20 19 25 25 H 1.48499 * 109.47244 * 89.99976 * 24 22 20 26 26 H 1.48497 * 109.47129 * 210.00254 * 24 22 20 27 27 H 1.48505 * 109.46806 * 330.00107 * 24 22 20 28 28 C 1.46923 * 118.73676 * 53.30433 * 19 18 17 29 29 H 1.09007 * 109.46966 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47736 * 300.00592 * 1 2 3 31 31 H 1.09003 * 109.46986 * 60.00767 * 1 2 3 32 32 H 0.96999 * 119.99450 * 95.00536 * 4 2 1 33 33 H 1.07998 * 127.99869 * 0.02562 * 8 7 5 34 34 H 1.09002 * 109.46510 * 179.97438 * 12 11 9 35 35 H 1.08998 * 109.46976 * 299.99959 * 12 11 9 36 36 H 1.08997 * 109.47093 * 60.00312 * 12 11 9 37 37 H 1.08990 * 109.45897 * 298.68739 * 16 14 2 38 38 H 1.09000 * 109.45851 * 58.64847 * 16 14 2 39 39 H 1.08998 * 109.49326 * 181.31985 * 17 16 14 40 40 H 1.09008 * 109.49676 * 301.38061 * 17 16 14 41 41 H 1.09000 * 109.50763 * 185.70096 * 18 17 16 42 42 H 1.09006 * 109.42391 * 65.42647 * 18 17 16 43 43 H 0.97000 * 119.99468 * 353.97254 * 23 22 20 44 44 H 1.09006 * 109.58528 * 66.43357 * 28 19 18 45 45 H 1.09001 * 109.58720 * 186.85647 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0182 -0.6904 1.1964 5 6 2.1469 -0.0179 2.3572 6 8 1.8575 1.1608 2.4117 7 6 2.6413 -0.7163 3.5673 8 6 2.8259 -0.1652 4.8003 9 6 3.3065 -1.2459 5.5923 10 8 3.6076 -1.2163 6.7740 11 7 3.3651 -2.3078 4.7636 12 6 3.8136 -3.6458 5.1575 13 8 2.9972 -2.0071 3.6516 14 6 2.0401 -0.7214 -1.2490 15 1 3.1265 -0.7987 -1.2063 16 6 1.6328 0.0661 -2.4966 17 6 2.1713 -0.6376 -3.7444 18 6 1.5676 -2.0377 -3.8373 19 7 1.8258 -2.7546 -2.5811 20 6 2.4293 -3.9837 -2.5906 21 1 3.0124 -4.3056 -1.7405 22 6 2.2915 -4.8160 -3.6929 23 7 1.2498 -4.6891 -4.4874 24 14 3.5885 -6.1113 -4.0532 25 1 3.2290 -7.3768 -3.3644 26 1 3.6588 -6.3474 -5.5176 27 1 4.9088 -5.6391 -3.5640 28 6 1.4297 -2.1249 -1.3141 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5137 -0.8901 32 1 2.2490 -1.6316 1.1529 33 1 2.6477 0.8552 5.1060 34 1 3.7618 -4.3139 4.2978 35 1 4.8415 -3.5935 5.5162 36 1 3.1705 -4.0254 5.9514 37 1 0.5457 0.1218 -2.5519 38 1 2.0455 1.0734 -2.4411 39 1 1.9009 -0.0638 -4.6308 40 1 3.2566 -0.7152 -3.6784 41 1 2.0251 -2.5771 -4.6666 42 1 0.4924 -1.9589 -3.9987 43 1 0.5354 -4.0752 -4.2559 44 1 0.3431 -2.0534 -1.2656 45 1 1.7963 -2.7218 -0.4790 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025395476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:33 Heat of formation + Delta-G solvation = 25.512918 kcal Electronic energy + Delta-G solvation = -28081.020768 eV Core-core repulsion = 24103.899498 eV Total energy + Delta-G solvation = -3977.121270 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.36865 -40.27668 -38.38962 -38.37178 -35.66593 -34.62119 -33.37703 -32.49951 -31.37561 -30.48654 -28.54523 -28.04434 -25.24086 -24.90533 -23.80546 -23.28738 -22.30424 -20.78641 -20.38888 -19.15946 -18.66411 -18.63367 -17.63849 -17.28576 -16.40614 -15.61700 -15.34105 -15.25647 -14.74131 -14.58858 -14.33731 -14.07988 -13.94611 -13.88220 -13.67652 -13.65493 -13.47110 -13.22768 -12.92463 -12.76019 -12.31073 -12.16193 -11.80457 -11.11589 -10.97828 -10.83559 -10.67878 -10.47108 -10.37795 -10.29290 -10.28676 -10.13047 -10.00150 -9.91603 -9.35141 -9.31012 -8.80589 -8.44486 -6.96190 -6.14786 -3.31847 0.26792 1.30086 2.31217 2.49898 2.74084 3.13455 3.42999 3.47669 3.62423 4.26682 4.41014 4.49918 4.70865 4.76795 4.77116 4.84353 4.99512 5.06729 5.17042 5.23938 5.37162 5.45406 5.49586 5.50287 5.57341 5.62631 5.74918 5.88659 5.98355 6.01731 6.07115 6.22326 6.32071 6.38078 6.42219 6.54459 6.61264 6.71606 7.01983 7.04881 7.13779 7.34515 7.65125 7.70245 7.90096 8.49470 9.02950 9.75869 10.20426 11.13663 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012889 B = 0.003463 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.807536 B = 8084.071313 C = 9900.317049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.148 3.852 3 H 0.090 0.910 4 N -0.700 5.700 5 C 0.601 3.399 6 O -0.501 6.501 7 C 0.034 3.966 8 C -0.240 4.240 9 C 0.480 3.520 10 O -0.524 6.524 11 N -0.451 5.451 12 C 0.107 3.893 13 O 0.000 6.000 14 C -0.114 4.114 15 H 0.075 0.925 16 C -0.100 4.100 17 C -0.137 4.137 18 C 0.148 3.852 19 N -0.597 5.597 20 C -0.353 4.353 21 H 0.055 0.945 22 C -0.022 4.022 23 N -0.914 5.914 24 Si 1.064 2.936 25 H -0.294 1.294 26 H -0.286 1.286 27 H -0.293 1.293 28 C 0.152 3.848 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.410 0.590 33 H 0.193 0.807 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.016 0.984 43 H 0.270 0.730 44 H 0.025 0.975 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.902 6.664 12.363 14.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.044 3.956 3 H 0.108 0.892 4 N -0.351 5.351 5 C 0.383 3.617 6 O -0.376 6.376 7 C -0.024 4.024 8 C -0.265 4.265 9 C 0.278 3.722 10 O -0.405 6.405 11 N -0.215 5.215 12 C -0.029 4.029 13 O -0.012 6.012 14 C -0.135 4.135 15 H 0.094 0.906 16 C -0.138 4.138 17 C -0.176 4.176 18 C 0.023 3.977 19 N -0.321 5.321 20 C -0.482 4.482 21 H 0.072 0.928 22 C -0.224 4.224 23 N -0.554 5.554 24 Si 0.894 3.106 25 H -0.222 1.222 26 H -0.211 1.211 27 H -0.219 1.219 28 C 0.026 3.974 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.247 0.753 33 H 0.210 0.790 34 H 0.120 0.880 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.034 0.966 43 H 0.081 0.919 44 H 0.043 0.957 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.398 5.951 11.805 13.436 hybrid contribution -0.338 0.710 1.163 1.403 sum 2.060 6.661 12.968 14.723 Atomic orbital electron populations 1.22288 0.94757 1.03092 1.02411 1.21230 0.94633 0.96937 0.82808 0.89237 1.46206 1.64824 1.14860 1.09176 1.16710 0.78537 0.85678 0.80777 1.90878 1.49843 1.13777 1.83119 1.23504 0.99349 0.81752 0.97835 1.23313 1.08304 1.02619 0.92271 1.18332 0.82743 0.83069 0.88060 1.90965 1.53960 1.82711 1.12862 1.46122 1.61099 1.13609 1.00621 1.22175 1.01433 0.76992 1.02316 1.84042 1.71969 1.27082 1.18088 1.21981 1.01214 0.98013 0.92319 0.90628 1.21420 1.00608 0.97425 0.94396 1.21989 1.00865 0.98648 0.96124 1.20885 0.96442 0.89889 0.90525 1.44064 1.70582 1.17721 0.99724 1.19935 1.27882 0.93408 1.06931 0.92763 1.25816 1.00509 0.99751 0.96334 1.70756 1.06460 1.36737 1.41453 0.83562 0.75241 0.75410 0.76434 1.22161 1.21128 1.21915 1.20996 0.96052 0.90300 0.90085 0.91362 0.92511 0.90917 0.75345 0.79004 0.87980 0.89105 0.89125 0.92094 0.93065 0.92846 0.92402 0.90300 0.96584 0.91923 0.95682 0.93297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 8.76 37.16 0.33 -1.67 16 2 C 0.15 1.83 2.35 -67.93 -0.16 1.67 16 3 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 4 N -0.70 -8.10 5.01 -54.64 -0.27 -8.37 16 5 C 0.60 7.30 7.81 -12.17 -0.09 7.21 16 6 O -0.50 -7.26 16.56 5.37 0.09 -7.17 16 7 C 0.03 0.38 7.25 -36.18 -0.26 0.12 16 8 C -0.24 -2.77 10.94 -38.70 -0.42 -3.19 16 9 C 0.48 6.17 8.02 -14.66 -0.12 6.05 16 10 O -0.52 -8.31 17.92 4.94 0.09 -8.22 16 11 N -0.45 -4.70 3.68 -69.76 -0.26 -4.96 16 12 C 0.11 0.70 11.18 59.85 0.67 1.36 16 13 O 0.00 0.00 10.69 16.85 0.18 0.18 16 14 C -0.11 -1.68 2.27 -90.50 -0.21 -1.89 16 15 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 16 C -0.10 -1.46 4.89 -26.68 -0.13 -1.59 16 17 C -0.14 -2.36 6.06 -26.83 -0.16 -2.52 16 18 C 0.15 3.23 4.66 -3.93 -0.02 3.21 16 19 N -0.60 -13.69 2.86 -172.59 -0.49 -14.19 16 20 C -0.35 -9.20 9.49 -15.06 -0.14 -9.34 16 21 H 0.05 1.41 7.94 -52.49 -0.42 0.99 16 22 C -0.02 -0.59 4.69 -17.43 -0.08 -0.67 16 23 N -0.91 -26.22 12.40 55.49 0.69 -25.53 16 24 Si 1.06 24.09 29.99 -169.99 -5.10 18.99 16 25 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 28 C 0.15 2.75 5.26 -3.71 -0.02 2.73 16 29 H 0.07 0.85 6.23 -51.93 -0.32 0.53 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.82 6.59 -51.93 -0.34 0.48 16 32 H 0.41 4.47 7.08 -40.82 -0.29 4.18 16 33 H 0.19 1.96 8.06 -52.49 -0.42 1.53 16 34 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.86 6.63 -51.93 -0.34 0.52 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 41 H 0.08 1.97 6.30 -51.93 -0.33 1.64 16 42 H 0.02 0.36 7.87 -51.93 -0.41 -0.05 16 43 H 0.27 7.78 6.71 -40.82 -0.27 7.50 16 44 H 0.03 0.46 6.06 -51.93 -0.31 0.15 16 45 H 0.05 0.86 6.74 -51.93 -0.35 0.51 16 LS Contribution 363.00 15.07 5.47 5.47 Total: -1.00 -32.50 363.00 -6.81 -39.32 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -6.39 Total: 3.00 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -0.82 Total: 1.48 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.34 Total: -53.05 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: 0.36 Total: -15.22 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -5.10 Total: 18.99 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.50 -6.81 -39.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025395476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.832 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds