Wall clock time and date at job start Tue Mar 31 2020 14:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08998 * 109.46664 * 2 1 4 4 N 1.46498 * 109.47026 * 119.99993 * 2 1 3 5 5 C 1.34780 * 120.00111 * 274.99749 * 4 2 1 6 6 O 1.21491 * 119.99568 * 0.02562 * 5 4 2 7 7 C 1.48199 * 119.99783 * 180.02562 * 5 4 2 8 8 C 1.36322 * 126.38051 * 179.71340 * 7 5 4 9 9 C 1.42349 * 104.00559 * 179.97438 * 8 7 5 10 10 O 1.21977 * 127.14876 * 180.08666 * 9 8 7 11 11 N 1.34829 * 105.70186 * 0.33297 * 9 8 7 12 12 C 1.46501 * 124.56438 * 179.80732 * 11 9 8 13 13 O 1.20922 * 110.86611 * 359.78562 * 11 9 8 14 14 C 1.52997 * 109.46713 * 240.00207 * 2 1 3 15 15 H 1.08993 * 109.52774 * 300.07598 * 14 2 1 16 16 C 1.53036 * 109.50173 * 60.16486 * 14 2 1 17 17 C 1.53349 * 109.60956 * 181.32364 * 16 14 2 18 18 C 1.53194 * 109.14721 * 298.70862 * 17 16 14 19 19 N 1.46924 * 108.89447 * 54.57940 * 18 17 16 20 20 C 1.36930 * 120.63300 * 126.34039 * 19 18 17 21 21 H 1.07996 * 120.00049 * 331.82927 * 20 19 18 22 22 C 1.38816 * 120.00324 * 151.82723 * 20 19 18 23 23 N 1.31624 * 119.99356 * 343.06571 * 22 20 19 24 24 Si 1.86793 * 120.00395 * 163.06593 * 22 20 19 25 25 H 1.48500 * 109.46960 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47338 * 119.99948 * 24 22 20 27 27 H 1.48503 * 109.47085 * 239.99957 * 24 22 20 28 28 C 1.46929 * 118.73622 * 306.31812 * 19 18 17 29 29 H 1.08996 * 109.47183 * 59.99856 * 1 2 3 30 30 H 1.08998 * 109.46664 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46887 * 299.99672 * 1 2 3 32 32 H 0.97000 * 119.99636 * 95.00235 * 4 2 1 33 33 H 1.07995 * 127.99840 * 0.02562 * 8 7 5 34 34 H 1.09005 * 109.47011 * 180.02562 * 12 11 9 35 35 H 1.08997 * 109.47365 * 299.99609 * 12 11 9 36 36 H 1.08999 * 109.47386 * 60.00214 * 12 11 9 37 37 H 1.08998 * 109.45668 * 301.33137 * 16 14 2 38 38 H 1.09000 * 109.46285 * 61.30372 * 16 14 2 39 39 H 1.08999 * 109.68685 * 178.74542 * 17 16 14 40 40 H 1.08997 * 109.47481 * 58.54432 * 17 16 14 41 41 H 1.08999 * 109.58554 * 294.71486 * 18 17 16 42 42 H 1.09001 * 109.58356 * 174.43691 * 18 17 16 43 43 H 0.96997 * 119.99488 * 180.02562 * 23 22 20 44 44 H 1.09002 * 109.58736 * 173.39352 * 28 19 18 45 45 H 1.08995 * 109.58640 * 293.68128 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1472 -0.0182 2.3572 6 8 1.8578 1.1604 2.4117 7 6 2.6417 -0.7168 3.5670 8 6 2.8263 -0.1658 4.8002 9 6 3.3070 -1.2466 5.5920 10 8 3.6082 -1.2171 6.7736 11 7 3.3655 -2.3084 4.7631 12 6 3.8139 -3.6464 5.1568 13 8 2.9976 -2.0076 3.6512 14 6 2.0400 -0.7212 -1.2493 15 1 1.6760 -1.7486 -1.2509 16 6 1.5336 0.0021 -2.4992 17 6 2.0158 -0.7378 -3.7529 18 6 3.5476 -0.7379 -3.7782 19 7 4.0442 -1.3004 -2.5151 20 6 4.9307 -2.3440 -2.5169 21 1 4.9360 -3.0467 -3.3370 22 6 5.8228 -2.4989 -1.4646 23 7 6.0565 -1.4943 -0.6469 24 14 6.6913 -4.1328 -1.2090 25 1 6.2579 -5.0927 -2.2559 26 1 8.1599 -3.9320 -1.2982 27 1 6.3459 -4.6728 0.1305 28 6 3.5720 -0.7215 -1.2499 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2491 -1.6318 1.1525 33 1 2.6482 0.8546 5.1059 34 1 3.7629 -4.3143 4.2968 35 1 4.8418 -3.5943 5.5154 36 1 3.1708 -4.0262 5.9508 37 1 0.4439 0.0253 -2.4888 38 1 1.9184 1.0219 -2.5097 39 1 1.6373 -0.2363 -4.6436 40 1 1.6523 -1.7651 -3.7309 41 1 3.9112 0.2834 -3.8915 42 1 3.8991 -1.3455 -4.6121 43 1 6.6801 -1.6024 0.0882 44 1 3.9376 -1.3198 -0.4153 45 1 3.9397 0.3002 -1.1558 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025395477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:36 Heat of formation + Delta-G solvation = 25.551523 kcal Electronic energy + Delta-G solvation = -28601.271921 eV Core-core repulsion = 24624.152324 eV Total energy + Delta-G solvation = -3977.119596 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.13383 -39.97260 -38.17141 -38.01169 -35.37834 -34.39747 -33.19256 -32.26922 -31.51340 -29.92124 -28.90835 -28.00261 -25.35328 -24.48138 -23.53037 -22.83223 -22.08701 -20.58974 -20.35209 -19.28054 -18.57173 -18.43015 -17.25697 -16.83481 -16.20490 -15.40951 -15.17306 -15.01789 -14.86836 -14.26271 -14.09498 -13.86455 -13.75562 -13.66347 -13.49086 -13.37726 -13.26909 -13.05460 -12.77959 -12.57220 -12.31108 -12.03597 -11.58166 -11.13409 -11.01684 -10.80235 -10.54857 -10.51446 -10.27771 -10.21135 -10.14719 -10.04894 -9.97200 -9.69215 -9.53272 -9.01868 -8.58741 -8.56622 -6.74556 -5.87373 -3.30107 0.52177 1.52723 2.54817 2.74572 3.01878 3.26789 3.36960 3.38054 3.38743 4.40138 4.51618 4.62294 4.89874 4.93298 4.94952 5.03742 5.20865 5.23092 5.35375 5.38591 5.48079 5.51888 5.64468 5.71532 5.72491 5.78760 5.94358 6.01404 6.07091 6.19173 6.28655 6.32434 6.41546 6.51245 6.56676 6.73163 6.79203 6.94772 7.21713 7.31492 7.54176 7.57395 7.71563 7.88875 7.96554 8.35841 9.12598 9.75951 10.33317 11.20301 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010443 B = 0.004864 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.667996 B = 5755.435575 C = 7891.107599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.148 3.852 3 H 0.091 0.909 4 N -0.693 5.693 5 C 0.604 3.396 6 O -0.503 6.503 7 C 0.041 3.959 8 C -0.245 4.245 9 C 0.481 3.519 10 O -0.528 6.528 11 N -0.451 5.451 12 C 0.108 3.892 13 O 0.001 5.999 14 C -0.122 4.122 15 H 0.070 0.930 16 C -0.101 4.101 17 C -0.133 4.133 18 C 0.142 3.858 19 N -0.592 5.592 20 C -0.252 4.252 21 H 0.066 0.934 22 C 0.003 3.997 23 N -0.899 5.899 24 Si 0.898 3.102 25 H -0.277 1.277 26 H -0.290 1.290 27 H -0.290 1.290 28 C 0.178 3.822 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.410 0.590 33 H 0.192 0.808 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.017 0.983 42 H 0.052 0.948 43 H 0.253 0.747 44 H 0.088 0.912 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.627 -1.770 4.472 11.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.044 3.956 3 H 0.109 0.891 4 N -0.343 5.343 5 C 0.385 3.615 6 O -0.379 6.379 7 C -0.017 4.017 8 C -0.270 4.270 9 C 0.279 3.721 10 O -0.409 6.409 11 N -0.214 5.214 12 C -0.028 4.028 13 O -0.010 6.010 14 C -0.142 4.142 15 H 0.089 0.911 16 C -0.140 4.140 17 C -0.172 4.172 18 C 0.016 3.984 19 N -0.314 5.314 20 C -0.381 4.381 21 H 0.083 0.917 22 C -0.196 4.196 23 N -0.544 5.544 24 Si 0.728 3.272 25 H -0.202 1.202 26 H -0.217 1.217 27 H -0.216 1.216 28 C 0.052 3.948 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.245 0.755 33 H 0.209 0.791 34 H 0.119 0.881 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.035 0.965 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.106 0.894 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -10.469 -1.281 5.127 11.727 hybrid contribution 0.745 -1.248 0.168 1.463 sum -9.724 -2.529 5.295 11.357 Atomic orbital electron populations 1.22233 0.95351 1.02120 1.02417 1.21187 0.93455 0.97747 0.83199 0.89071 1.46029 1.64536 1.14731 1.08961 1.16653 0.78426 0.85607 0.80792 1.90860 1.50144 1.13663 1.83223 1.23533 0.98798 0.81689 0.97724 1.23265 1.08841 1.02517 0.92360 1.18328 0.82670 0.83065 0.88030 1.90947 1.54265 1.82753 1.12974 1.46069 1.61137 1.13533 1.00644 1.22135 1.01446 0.77161 1.02090 1.84051 1.71780 1.27165 1.18027 1.22182 1.01484 0.98796 0.91776 0.91145 1.21489 0.98854 0.99061 0.94552 1.22047 0.99061 0.99863 0.96268 1.20936 0.91061 0.96407 0.90008 1.44031 1.49916 1.38030 0.99445 1.19227 1.10243 1.01578 1.07097 0.91653 1.25039 0.97069 0.97312 1.00156 1.70049 1.36815 1.28711 1.18806 0.86281 0.79320 0.83892 0.77664 1.20249 1.21715 1.21649 1.20793 0.86140 0.97369 0.90487 0.90993 0.92479 0.92475 0.75479 0.79081 0.88140 0.89169 0.89267 0.92978 0.92457 0.92996 0.92430 0.96504 0.92952 0.93728 0.89364 0.96379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.14 37.16 0.34 -1.57 16 2 C 0.15 2.11 2.16 -67.93 -0.15 1.96 16 3 H 0.09 1.45 7.58 -51.93 -0.39 1.05 16 4 N -0.69 -9.81 4.47 -54.64 -0.24 -10.05 16 5 C 0.60 9.05 7.81 -12.17 -0.09 8.95 16 6 O -0.50 -8.62 16.56 5.37 0.09 -8.53 16 7 C 0.04 0.58 7.25 -36.18 -0.26 0.32 16 8 C -0.24 -3.47 10.94 -38.69 -0.42 -3.89 16 9 C 0.48 7.36 8.02 -14.66 -0.12 7.24 16 10 O -0.53 -9.51 17.92 4.94 0.09 -9.42 16 11 N -0.45 -5.88 3.68 -69.77 -0.26 -6.14 16 12 C 0.11 0.96 11.18 59.85 0.67 1.63 16 13 O 0.00 0.02 10.69 16.85 0.18 0.20 16 14 C -0.12 -1.96 1.98 -90.50 -0.18 -2.14 16 15 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 16 C -0.10 -1.49 4.86 -26.53 -0.13 -1.62 16 17 C -0.13 -2.10 6.11 -26.45 -0.16 -2.26 16 18 C 0.14 2.81 6.50 -3.71 -0.02 2.78 16 19 N -0.59 -13.85 2.99 -172.31 -0.52 -14.37 16 20 C -0.25 -6.53 9.58 -15.06 -0.14 -6.67 16 21 H 0.07 1.68 7.88 -52.49 -0.41 1.27 16 22 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 23 N -0.90 -24.71 11.20 55.49 0.62 -24.09 16 24 Si 0.90 20.54 29.59 -169.99 -5.03 15.51 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 28 C 0.18 3.82 4.34 -3.70 -0.02 3.81 16 29 H 0.07 0.77 6.41 -51.93 -0.33 0.43 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.41 5.50 8.23 -40.82 -0.34 5.16 16 33 H 0.19 2.42 8.06 -52.49 -0.42 2.00 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.64 6.36 -51.93 -0.33 0.31 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 43 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 44 H 0.09 2.08 5.57 -51.93 -0.29 1.79 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 369.09 15.07 5.56 5.56 Total: -1.00 -31.90 369.09 -7.00 -38.90 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -6.72 Total: 3.88 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -0.78 Total: 8.53 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.40 Total: -54.64 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: 0.36 Total: -17.75 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.90 -7.00 -38.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025395477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.452 kcal (2) G-P(sol) polarization free energy of solvation -31.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds