Wall clock time and date at job start Tue Mar 31 2020 14:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08998 * 109.46664 * 2 1 4 4 N 1.46498 * 109.47026 * 119.99993 * 2 1 3 5 5 C 1.34780 * 120.00111 * 274.99749 * 4 2 1 6 6 O 1.21491 * 119.99568 * 0.02562 * 5 4 2 7 7 C 1.48199 * 119.99783 * 180.02562 * 5 4 2 8 8 C 1.36322 * 126.38051 * 179.71340 * 7 5 4 9 9 C 1.42349 * 104.00559 * 179.97438 * 8 7 5 10 10 O 1.21977 * 127.14876 * 180.08666 * 9 8 7 11 11 N 1.34829 * 105.70186 * 0.33297 * 9 8 7 12 12 C 1.46501 * 124.56438 * 179.80732 * 11 9 8 13 13 O 1.20922 * 110.86611 * 359.78562 * 11 9 8 14 14 C 1.52997 * 109.46713 * 240.00207 * 2 1 3 15 15 H 1.08993 * 109.52774 * 300.07598 * 14 2 1 16 16 C 1.53036 * 109.50173 * 60.16486 * 14 2 1 17 17 C 1.53349 * 109.60956 * 181.32364 * 16 14 2 18 18 C 1.53194 * 109.14721 * 298.70862 * 17 16 14 19 19 N 1.46924 * 108.89447 * 54.57940 * 18 17 16 20 20 C 1.36930 * 120.63300 * 126.34039 * 19 18 17 21 21 H 1.07996 * 120.00049 * 331.82927 * 20 19 18 22 22 C 1.38816 * 120.00324 * 151.82723 * 20 19 18 23 23 N 1.31624 * 119.99356 * 343.06571 * 22 20 19 24 24 Si 1.86793 * 120.00395 * 163.06593 * 22 20 19 25 25 H 1.48500 * 109.46960 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47338 * 119.99948 * 24 22 20 27 27 H 1.48503 * 109.47085 * 239.99957 * 24 22 20 28 28 C 1.46929 * 118.73622 * 306.31812 * 19 18 17 29 29 H 1.08996 * 109.47183 * 59.99856 * 1 2 3 30 30 H 1.08998 * 109.46664 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46887 * 299.99672 * 1 2 3 32 32 H 0.97000 * 119.99636 * 95.00235 * 4 2 1 33 33 H 1.07995 * 127.99840 * 0.02562 * 8 7 5 34 34 H 1.09005 * 109.47011 * 180.02562 * 12 11 9 35 35 H 1.08997 * 109.47365 * 299.99609 * 12 11 9 36 36 H 1.08999 * 109.47386 * 60.00214 * 12 11 9 37 37 H 1.08998 * 109.45668 * 301.33137 * 16 14 2 38 38 H 1.09000 * 109.46285 * 61.30372 * 16 14 2 39 39 H 1.08999 * 109.68685 * 178.74542 * 17 16 14 40 40 H 1.08997 * 109.47481 * 58.54432 * 17 16 14 41 41 H 1.08999 * 109.58554 * 294.71486 * 18 17 16 42 42 H 1.09001 * 109.58356 * 174.43691 * 18 17 16 43 43 H 0.96997 * 119.99488 * 180.02562 * 23 22 20 44 44 H 1.09002 * 109.58736 * 173.39352 * 28 19 18 45 45 H 1.08995 * 109.58640 * 293.68128 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1472 -0.0182 2.3572 6 8 1.8578 1.1604 2.4117 7 6 2.6417 -0.7168 3.5670 8 6 2.8263 -0.1658 4.8002 9 6 3.3070 -1.2466 5.5920 10 8 3.6082 -1.2171 6.7736 11 7 3.3655 -2.3084 4.7631 12 6 3.8139 -3.6464 5.1568 13 8 2.9976 -2.0076 3.6512 14 6 2.0400 -0.7212 -1.2493 15 1 1.6760 -1.7486 -1.2509 16 6 1.5336 0.0021 -2.4992 17 6 2.0158 -0.7378 -3.7529 18 6 3.5476 -0.7379 -3.7782 19 7 4.0442 -1.3004 -2.5151 20 6 4.9307 -2.3440 -2.5169 21 1 4.9360 -3.0467 -3.3370 22 6 5.8228 -2.4989 -1.4646 23 7 6.0565 -1.4943 -0.6469 24 14 6.6913 -4.1328 -1.2090 25 1 6.2579 -5.0927 -2.2559 26 1 8.1599 -3.9320 -1.2982 27 1 6.3459 -4.6728 0.1305 28 6 3.5720 -0.7215 -1.2499 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2491 -1.6318 1.1525 33 1 2.6482 0.8546 5.1059 34 1 3.7629 -4.3143 4.2968 35 1 4.8418 -3.5943 5.5154 36 1 3.1708 -4.0262 5.9508 37 1 0.4439 0.0253 -2.4888 38 1 1.9184 1.0219 -2.5097 39 1 1.6373 -0.2363 -4.6436 40 1 1.6523 -1.7651 -3.7309 41 1 3.9112 0.2834 -3.8915 42 1 3.8991 -1.3455 -4.6121 43 1 6.6801 -1.6024 0.0882 44 1 3.9376 -1.3198 -0.4153 45 1 3.9397 0.3002 -1.1558 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025395477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:35 Heat of formation + Delta-G solvation = 4.963415 kcal Electronic energy + Delta-G solvation = -28602.164688 eV Core-core repulsion = 24624.152324 eV Total energy + Delta-G solvation = -3978.012364 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.25677 -41.20704 -39.44112 -39.38754 -36.77706 -35.45066 -34.82872 -33.42936 -32.93764 -31.56661 -30.19601 -28.95760 -27.09510 -25.66760 -24.68320 -24.11348 -23.66414 -21.93437 -21.55532 -20.69025 -19.72637 -19.53141 -18.68666 -18.32796 -17.44951 -16.89640 -16.53476 -16.21437 -16.17181 -15.79182 -15.41390 -15.21367 -15.05882 -14.92621 -14.82370 -14.63958 -14.29658 -14.09661 -14.01846 -13.74564 -13.72117 -13.36530 -12.95437 -12.71896 -12.64910 -12.33808 -12.10478 -11.95326 -11.80331 -11.67191 -11.47134 -11.39848 -11.16639 -11.10052 -11.02601 -10.54331 -10.21819 -9.72032 -8.63726 -7.84826 -5.30532 -0.63270 0.49824 1.35378 1.44465 1.49171 1.58385 1.59698 1.84080 2.24445 2.52050 3.27150 3.36347 3.56233 3.63761 3.84573 3.98190 4.08727 4.15180 4.21177 4.27009 4.33435 4.44269 4.52270 4.56589 4.64776 4.69657 4.77618 4.78397 4.88424 4.90609 5.01794 5.08647 5.19514 5.22218 5.26632 5.37015 5.48491 5.51062 5.59920 5.69826 5.83016 6.12854 6.40868 6.41269 6.75082 6.79915 7.17709 7.89504 8.41118 9.19767 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010443 B = 0.004864 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.667996 B = 5755.435575 C = 7891.107599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.151 3.849 3 H 0.072 0.928 4 N -0.689 5.689 5 C 0.607 3.393 6 O -0.527 6.527 7 C 0.039 3.961 8 C -0.246 4.246 9 C 0.470 3.530 10 O -0.563 6.563 11 N -0.444 5.444 12 C 0.095 3.905 13 O 0.009 5.991 14 C -0.106 4.106 15 H 0.076 0.924 16 C -0.100 4.100 17 C -0.122 4.122 18 C 0.134 3.866 19 N -0.611 5.611 20 C -0.260 4.260 21 H 0.064 0.936 22 C -0.044 4.044 23 N -0.930 5.930 24 Si 0.959 3.041 25 H -0.268 1.268 26 H -0.300 1.300 27 H -0.283 1.283 28 C 0.187 3.813 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.414 0.586 33 H 0.202 0.798 34 H 0.122 0.878 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.051 0.949 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.006 0.994 42 H 0.048 0.952 43 H 0.247 0.753 44 H 0.063 0.937 45 H -0.019 1.019 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.601 -3.037 3.633 13.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.047 3.953 3 H 0.091 0.909 4 N -0.338 5.338 5 C 0.389 3.611 6 O -0.405 6.405 7 C -0.020 4.020 8 C -0.271 4.271 9 C 0.269 3.731 10 O -0.448 6.448 11 N -0.205 5.205 12 C -0.040 4.040 13 O -0.003 6.003 14 C -0.126 4.126 15 H 0.094 0.906 16 C -0.138 4.138 17 C -0.161 4.161 18 C 0.008 3.992 19 N -0.334 5.334 20 C -0.390 4.390 21 H 0.082 0.918 22 C -0.240 4.240 23 N -0.576 5.576 24 Si 0.787 3.213 25 H -0.193 1.193 26 H -0.228 1.228 27 H -0.209 1.209 28 C 0.061 3.939 29 H 0.108 0.892 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.250 0.750 33 H 0.219 0.781 34 H 0.140 0.860 35 H 0.114 0.886 36 H 0.127 0.873 37 H 0.109 0.891 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.024 0.976 42 H 0.067 0.933 43 H 0.056 0.944 44 H 0.082 0.918 45 H -0.001 1.001 Dipole moment (debyes) X Y Z Total from point charges -12.468 -2.592 4.244 13.423 hybrid contribution 1.428 -0.861 0.319 1.698 sum -11.040 -3.453 4.563 12.434 Atomic orbital electron populations 1.22159 0.92453 1.03313 1.03174 1.21154 0.95507 0.96329 0.82263 0.90943 1.46043 1.64105 1.14883 1.08794 1.16657 0.78089 0.85307 0.81066 1.90845 1.51335 1.14613 1.83671 1.23324 0.99313 0.82012 0.97365 1.23434 1.08462 1.02969 0.92214 1.18445 0.82940 0.83842 0.87845 1.90921 1.56168 1.83442 1.14227 1.46398 1.59693 1.14388 1.00014 1.22583 1.02164 0.75527 1.03701 1.84067 1.71261 1.26790 1.18159 1.21941 0.97170 0.99759 0.93736 0.90552 1.21522 1.01095 0.98197 0.92952 1.21929 0.95354 1.00637 0.98146 1.21128 0.94225 0.95362 0.88438 1.44342 1.50001 1.37898 1.01191 1.19512 1.10431 1.02171 1.06892 0.91834 1.25694 0.98078 1.00025 1.00218 1.70212 1.37648 1.30416 1.19295 0.85343 0.77416 0.80599 0.77919 1.19265 1.22793 1.20929 1.20594 0.89771 0.94357 0.89129 0.89238 0.91008 0.92739 0.75009 0.78110 0.85967 0.88631 0.87299 0.89124 0.93014 0.89947 0.92206 0.97581 0.93301 0.94389 0.91822 1.00131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.14 71.99 0.66 -2.45 16 2 C 0.15 4.12 2.16 44.99 0.10 4.22 16 3 H 0.07 2.28 7.58 -2.39 -0.02 2.26 16 4 N -0.69 -19.08 4.47 -445.08 -1.99 -21.07 16 5 C 0.61 18.06 7.81 86.89 0.68 18.74 16 6 O -0.53 -18.06 16.56 -3.69 -0.06 -18.12 16 7 C 0.04 1.09 7.25 24.47 0.18 1.27 16 8 C -0.25 -6.96 10.94 22.85 0.25 -6.71 16 9 C 0.47 14.32 8.02 85.26 0.68 15.01 16 10 O -0.56 -20.42 17.92 -5.24 -0.09 -20.52 16 11 N -0.44 -11.18 3.68 -492.73 -1.82 -12.99 16 12 C 0.09 1.53 11.18 127.77 1.43 2.95 16 13 O 0.01 0.24 10.69 70.48 0.75 0.99 16 14 C -0.11 -3.25 1.98 -10.72 -0.02 -3.27 16 15 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 16 C -0.10 -2.65 4.86 30.72 0.15 -2.50 16 17 C -0.12 -3.49 6.11 30.78 0.19 -3.30 16 18 C 0.13 5.21 6.50 86.36 0.56 5.77 16 19 N -0.61 -28.77 2.99 -699.08 -2.09 -30.86 16 20 C -0.26 -13.54 9.58 84.04 0.81 -12.73 16 21 H 0.06 3.27 7.88 -2.91 -0.02 3.24 16 22 C -0.04 -2.35 4.92 84.86 0.42 -1.93 16 23 N -0.93 -52.33 11.20 21.65 0.24 -52.08 16 24 Si 0.96 42.33 29.59 68.60 2.03 44.36 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 26 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 27 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 28 C 0.19 8.15 4.34 86.37 0.37 8.53 16 29 H 0.09 1.52 6.41 -2.39 -0.02 1.50 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.41 10.80 8.23 -92.71 -0.76 10.03 16 33 H 0.20 5.12 8.06 -2.91 -0.02 5.09 16 34 H 0.12 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.09 1.79 6.36 -2.39 -0.02 1.77 16 38 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.05 1.89 7.93 -2.39 -0.02 1.87 16 43 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 44 H 0.06 3.07 5.57 -2.39 -0.01 3.06 16 45 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 Total: -1.00 -70.46 369.09 3.67 -66.80 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.25 Total: 19.89 kcal Atomic # 6 Polarization: 17.15 SS G_CDS: 6.45 Total: 23.60 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -5.66 Total: -117.01 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: 0.60 Total: -37.65 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -70.46 3.67 -66.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025395477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.760 kcal (2) G-P(sol) polarization free energy of solvation -70.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds