Wall clock time and date at job start Tue Mar 31 2020 14:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46648 * 2 1 4 4 N 1.46503 * 109.46940 * 240.00719 * 2 1 3 5 5 C 1.34772 * 120.00120 * 84.72322 * 4 2 1 6 6 O 1.21490 * 120.00030 * 0.02562 * 5 4 2 7 7 C 1.48209 * 119.99726 * 179.97438 * 5 4 2 8 8 C 1.36313 * 126.38152 * 179.71254 * 7 5 4 9 9 C 1.42346 * 104.00800 * 179.97438 * 8 7 5 10 10 O 1.21981 * 127.15138 * 180.08164 * 9 8 7 11 11 N 1.34832 * 105.69950 * 0.33482 * 9 8 7 12 12 C 1.46498 * 124.56227 * 179.80247 * 11 9 8 13 13 O 1.20917 * 110.86518 * 359.78537 * 11 9 8 14 14 C 1.52997 * 109.47144 * 120.00595 * 2 1 3 15 15 H 1.08995 * 109.49597 * 180.02562 * 14 2 1 16 16 C 1.53041 * 109.49397 * 300.15966 * 14 2 1 17 17 C 1.53043 * 109.53463 * 181.31523 * 16 14 2 18 18 C 1.53190 * 109.31695 * 298.63695 * 17 16 14 19 19 N 1.46924 * 108.77296 * 54.63189 * 18 17 16 20 20 C 1.36936 * 120.62626 * 126.37191 * 19 18 17 21 21 H 1.07998 * 120.00425 * 331.84460 * 20 19 18 22 22 C 1.38821 * 120.00024 * 151.84564 * 20 19 18 23 23 N 1.31617 * 119.99553 * 343.06659 * 22 20 19 24 24 Si 1.86793 * 120.00123 * 163.06678 * 22 20 19 25 25 H 1.48504 * 109.47105 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47198 * 120.00008 * 24 22 20 27 27 H 1.48503 * 109.46974 * 240.00310 * 24 22 20 28 28 C 1.46922 * 118.74145 * 306.39227 * 19 18 17 29 29 H 1.08998 * 109.47179 * 59.99805 * 1 2 3 30 30 H 1.09000 * 109.47129 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47317 * 299.99845 * 1 2 3 32 32 H 0.97004 * 119.99385 * 265.00114 * 4 2 1 33 33 H 1.07998 * 127.99831 * 0.02562 * 8 7 5 34 34 H 1.09003 * 109.46878 * 179.97438 * 12 11 9 35 35 H 1.08997 * 109.47608 * 299.99705 * 12 11 9 36 36 H 1.09006 * 109.47291 * 60.00508 * 12 11 9 37 37 H 1.08997 * 109.46209 * 301.33655 * 16 14 2 38 38 H 1.09000 * 109.46022 * 61.29879 * 16 14 2 39 39 H 1.09005 * 109.49805 * 178.68831 * 17 16 14 40 40 H 1.09000 * 109.52471 * 58.60493 * 17 16 14 41 41 H 1.09011 * 109.58393 * 294.84992 * 18 17 16 42 42 H 1.08994 * 109.70642 * 174.49111 * 18 17 16 43 43 H 0.97006 * 119.99378 * 179.97438 * 23 22 20 44 44 H 1.09003 * 109.59063 * 293.82082 * 28 19 18 45 45 H 1.09005 * 109.58962 * 173.39264 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1963 5 6 2.1418 -0.0194 -2.3585 6 8 1.8485 1.1583 -2.4141 7 6 2.6363 -0.7179 -3.5686 8 6 2.8056 -0.1707 -4.8055 9 6 3.2950 -1.2492 -5.5953 10 8 3.5906 -1.2210 -6.7784 11 7 3.3586 -2.3098 -4.7652 12 6 3.8087 -3.6472 -5.1585 13 8 2.9943 -2.0081 -3.6523 14 6 2.0401 -0.7214 1.2491 15 1 3.1300 -0.7212 1.2498 16 6 1.5269 -0.0028 2.4991 17 6 2.0634 -0.7042 3.7491 18 6 1.5534 -2.1484 3.7780 19 7 1.9181 -2.8040 2.5147 20 6 2.6073 -3.9873 2.5164 21 1 3.2683 -4.2261 3.3365 22 6 2.4565 -4.8800 1.4641 23 7 1.4313 -4.7661 0.6465 24 14 3.7083 -6.2426 1.2084 25 1 4.7578 -6.1534 2.2553 26 1 3.0303 -7.5607 1.2975 27 1 4.3324 -6.0965 -0.1311 28 6 1.5297 -2.1658 1.2497 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.2490 -1.6317 -1.1528 33 1 2.6136 0.8461 -5.1147 34 1 3.7621 -4.3141 -4.2976 35 1 3.1641 -4.0295 -5.9499 36 1 4.8355 -3.5932 -5.5205 37 1 1.8683 1.0323 2.4889 38 1 0.4372 -0.0255 2.5095 39 1 1.7166 -0.1781 4.6386 40 1 3.1532 -0.7036 3.7278 41 1 0.4692 -2.1509 3.8912 42 1 2.0091 -2.6825 4.6117 43 1 1.3262 -5.3897 -0.0891 44 1 0.4437 -2.1696 1.1567 45 1 1.9719 -2.7098 0.4150 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025395478.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:39 Heat of formation + Delta-G solvation = 27.202256 kcal Electronic energy + Delta-G solvation = -28597.808752 eV Core-core repulsion = 24620.760736 eV Total energy + Delta-G solvation = -3977.048015 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.17239 -40.03973 -38.20531 -38.14932 -35.33440 -34.42237 -33.23056 -32.30608 -31.56078 -30.02262 -28.52671 -27.90887 -25.41368 -24.72835 -23.61435 -23.09687 -22.26305 -20.66741 -20.16784 -18.99669 -18.49063 -18.46438 -17.35235 -16.75951 -16.20501 -15.45542 -15.14111 -15.04002 -14.89818 -14.28651 -14.21733 -13.94708 -13.85884 -13.73913 -13.66759 -13.47961 -13.13109 -13.03628 -12.71360 -12.50934 -12.31701 -11.87032 -11.65840 -11.13913 -10.96557 -10.78531 -10.62330 -10.46695 -10.29888 -10.25551 -10.13193 -10.09899 -10.01075 -9.66300 -9.51364 -9.07484 -8.61979 -8.59967 -6.77418 -5.92312 -3.34011 0.46976 1.50119 2.50089 2.73000 2.94581 3.24693 3.34728 3.35967 3.37227 4.37485 4.48377 4.61735 4.90157 4.94267 4.96632 5.03758 5.17275 5.24231 5.30901 5.42343 5.48063 5.58769 5.65223 5.67380 5.75989 5.77441 5.92266 6.07988 6.14204 6.18709 6.28552 6.40471 6.42200 6.53448 6.58817 6.73612 6.76452 6.92893 7.15609 7.30520 7.43706 7.54990 7.68060 7.86101 7.93006 8.31521 9.08747 9.71625 10.28895 11.15858 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010826 B = 0.004710 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.846935 B = 5943.002560 C = 8152.652836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.151 3.849 3 H 0.085 0.915 4 N -0.695 5.695 5 C 0.600 3.400 6 O -0.507 6.507 7 C 0.038 3.962 8 C -0.246 4.246 9 C 0.479 3.521 10 O -0.528 6.528 11 N -0.450 5.450 12 C 0.107 3.893 13 O 0.004 5.996 14 C -0.125 4.125 15 H 0.071 0.929 16 C -0.101 4.101 17 C -0.134 4.134 18 C 0.143 3.857 19 N -0.592 5.592 20 C -0.249 4.249 21 H 0.066 0.934 22 C 0.002 3.998 23 N -0.903 5.903 24 Si 0.899 3.101 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.289 1.289 28 C 0.176 3.824 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.415 0.585 33 H 0.192 0.808 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.048 0.952 38 H 0.061 0.939 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.018 0.982 42 H 0.053 0.947 43 H 0.253 0.747 44 H 0.027 0.973 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.195 6.433 -4.324 7.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.047 3.953 3 H 0.103 0.897 4 N -0.346 5.346 5 C 0.381 3.619 6 O -0.383 6.383 7 C -0.021 4.021 8 C -0.271 4.271 9 C 0.278 3.722 10 O -0.410 6.410 11 N -0.212 5.212 12 C -0.030 4.030 13 O -0.007 6.007 14 C -0.146 4.146 15 H 0.089 0.911 16 C -0.139 4.139 17 C -0.173 4.173 18 C 0.017 3.983 19 N -0.314 5.314 20 C -0.379 4.379 21 H 0.084 0.916 22 C -0.196 4.196 23 N -0.548 5.548 24 Si 0.729 3.271 25 H -0.203 1.203 26 H -0.217 1.217 27 H -0.216 1.216 28 C 0.050 3.950 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.253 0.747 33 H 0.209 0.791 34 H 0.121 0.879 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.036 0.964 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.045 0.955 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.174 6.778 -4.974 8.489 hybrid contribution 0.713 -1.233 -0.193 1.437 sum 1.887 5.545 -5.166 7.810 Atomic orbital electron populations 1.22288 0.94904 1.03400 1.01981 1.21161 0.94584 0.96486 0.83100 0.89714 1.46274 1.64217 1.15274 1.08877 1.16724 0.78651 0.85652 0.80861 1.90855 1.50264 1.13897 1.83245 1.23561 0.98886 0.81769 0.97853 1.23261 1.08925 1.02673 0.92204 1.18336 0.82755 0.83080 0.88044 1.90950 1.54535 1.82728 1.12758 1.46109 1.60948 1.13596 1.00590 1.22167 1.01242 0.77173 1.02392 1.84101 1.71792 1.27022 1.17827 1.22174 1.00833 0.99700 0.91861 0.91090 1.21428 1.00403 0.97561 0.94527 1.21997 1.00707 0.98266 0.96338 1.20937 0.96434 0.90997 0.89931 1.44014 1.65382 1.22556 0.99458 1.19258 1.17572 0.94008 1.07064 0.91640 1.25013 0.97051 0.97372 1.00155 1.70041 1.27343 1.38454 1.18938 0.86273 0.81191 0.81910 0.77747 1.20267 1.21695 1.21607 1.20879 0.96867 0.86850 0.90448 0.92765 0.90941 0.91186 0.74703 0.79089 0.87912 0.89145 0.89209 0.93336 0.92023 0.93001 0.92432 0.96427 0.92886 0.93728 0.95486 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 8.78 37.16 0.33 -2.00 16 2 C 0.15 2.17 2.40 -67.93 -0.16 2.01 16 3 H 0.08 1.21 7.58 -51.93 -0.39 0.81 16 4 N -0.70 -10.06 5.00 -54.64 -0.27 -10.33 16 5 C 0.60 8.70 7.80 -12.17 -0.09 8.60 16 6 O -0.51 -8.27 16.56 5.37 0.09 -8.18 16 7 C 0.04 0.52 7.25 -36.18 -0.26 0.26 16 8 C -0.25 -3.32 10.94 -38.70 -0.42 -3.74 16 9 C 0.48 7.12 8.02 -14.66 -0.12 7.00 16 10 O -0.53 -9.28 17.92 4.94 0.09 -9.19 16 11 N -0.45 -5.81 3.68 -69.77 -0.26 -6.07 16 12 C 0.11 0.97 11.18 59.85 0.67 1.64 16 13 O 0.00 0.05 10.69 16.85 0.18 0.23 16 14 C -0.12 -2.03 2.33 -90.50 -0.21 -2.24 16 15 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 16 C -0.10 -1.49 4.77 -26.69 -0.13 -1.62 16 17 C -0.13 -2.10 6.08 -26.61 -0.16 -2.27 16 18 C 0.14 2.77 6.52 -3.71 -0.02 2.74 16 19 N -0.59 -13.47 2.99 -172.32 -0.52 -13.99 16 20 C -0.25 -6.33 9.58 -15.06 -0.14 -6.48 16 21 H 0.07 1.66 7.88 -52.49 -0.41 1.25 16 22 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 23 N -0.90 -23.62 11.20 55.49 0.62 -23.00 16 24 Si 0.90 20.09 29.59 -169.99 -5.03 15.06 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 27 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 28 C 0.18 3.58 4.08 -3.71 -0.02 3.57 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 1.11 6.32 -51.93 -0.33 0.78 16 31 H 0.07 0.88 6.46 -51.93 -0.34 0.55 16 32 H 0.42 6.25 6.78 -40.82 -0.28 5.98 16 33 H 0.19 2.27 8.06 -52.49 -0.42 1.85 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.89 6.50 -51.93 -0.34 0.55 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.02 0.35 8.14 -51.92 -0.42 -0.08 16 42 H 0.05 1.02 7.93 -51.93 -0.41 0.60 16 43 H 0.25 6.41 8.31 -40.82 -0.34 6.07 16 44 H 0.03 0.59 6.18 -51.93 -0.32 0.27 16 45 H 0.08 1.87 4.64 -51.93 -0.24 1.63 16 LS Contribution 363.54 15.07 5.48 5.48 Total: -1.00 -30.28 363.54 -6.88 -37.15 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -6.42 Total: 5.37 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -0.84 Total: 7.46 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: -0.42 Total: -53.39 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.36 Total: -17.13 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.03 Total: 15.06 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.28 -6.88 -37.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025395478.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.356 kcal (2) G-P(sol) polarization free energy of solvation -30.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds