Wall clock time and date at job start Tue Mar 31 2020 14:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46648 * 2 1 4 4 N 1.46503 * 109.46940 * 240.00719 * 2 1 3 5 5 C 1.34772 * 120.00120 * 84.72322 * 4 2 1 6 6 O 1.21490 * 120.00030 * 0.02562 * 5 4 2 7 7 C 1.48209 * 119.99726 * 179.97438 * 5 4 2 8 8 C 1.36313 * 126.38152 * 179.71254 * 7 5 4 9 9 C 1.42346 * 104.00800 * 179.97438 * 8 7 5 10 10 O 1.21981 * 127.15138 * 180.08164 * 9 8 7 11 11 N 1.34832 * 105.69950 * 0.33482 * 9 8 7 12 12 C 1.46498 * 124.56227 * 179.80247 * 11 9 8 13 13 O 1.20917 * 110.86518 * 359.78537 * 11 9 8 14 14 C 1.52997 * 109.47144 * 120.00595 * 2 1 3 15 15 H 1.08995 * 109.49597 * 180.02562 * 14 2 1 16 16 C 1.53041 * 109.49397 * 300.15966 * 14 2 1 17 17 C 1.53043 * 109.53463 * 181.31523 * 16 14 2 18 18 C 1.53190 * 109.31695 * 298.63695 * 17 16 14 19 19 N 1.46924 * 108.77296 * 54.63189 * 18 17 16 20 20 C 1.36936 * 120.62626 * 126.37191 * 19 18 17 21 21 H 1.07998 * 120.00425 * 331.84460 * 20 19 18 22 22 C 1.38821 * 120.00024 * 151.84564 * 20 19 18 23 23 N 1.31617 * 119.99553 * 343.06659 * 22 20 19 24 24 Si 1.86793 * 120.00123 * 163.06678 * 22 20 19 25 25 H 1.48504 * 109.47105 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47198 * 120.00008 * 24 22 20 27 27 H 1.48503 * 109.46974 * 240.00310 * 24 22 20 28 28 C 1.46922 * 118.74145 * 306.39227 * 19 18 17 29 29 H 1.08998 * 109.47179 * 59.99805 * 1 2 3 30 30 H 1.09000 * 109.47129 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47317 * 299.99845 * 1 2 3 32 32 H 0.97004 * 119.99385 * 265.00114 * 4 2 1 33 33 H 1.07998 * 127.99831 * 0.02562 * 8 7 5 34 34 H 1.09003 * 109.46878 * 179.97438 * 12 11 9 35 35 H 1.08997 * 109.47608 * 299.99705 * 12 11 9 36 36 H 1.09006 * 109.47291 * 60.00508 * 12 11 9 37 37 H 1.08997 * 109.46209 * 301.33655 * 16 14 2 38 38 H 1.09000 * 109.46022 * 61.29879 * 16 14 2 39 39 H 1.09005 * 109.49805 * 178.68831 * 17 16 14 40 40 H 1.09000 * 109.52471 * 58.60493 * 17 16 14 41 41 H 1.09011 * 109.58393 * 294.84992 * 18 17 16 42 42 H 1.08994 * 109.70642 * 174.49111 * 18 17 16 43 43 H 0.97006 * 119.99378 * 179.97438 * 23 22 20 44 44 H 1.09003 * 109.59063 * 293.82082 * 28 19 18 45 45 H 1.09005 * 109.58962 * 173.39264 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1963 5 6 2.1418 -0.0194 -2.3585 6 8 1.8485 1.1583 -2.4141 7 6 2.6363 -0.7179 -3.5686 8 6 2.8056 -0.1707 -4.8055 9 6 3.2950 -1.2492 -5.5953 10 8 3.5906 -1.2210 -6.7784 11 7 3.3586 -2.3098 -4.7652 12 6 3.8087 -3.6472 -5.1585 13 8 2.9943 -2.0081 -3.6523 14 6 2.0401 -0.7214 1.2491 15 1 3.1300 -0.7212 1.2498 16 6 1.5269 -0.0028 2.4991 17 6 2.0634 -0.7042 3.7491 18 6 1.5534 -2.1484 3.7780 19 7 1.9181 -2.8040 2.5147 20 6 2.6073 -3.9873 2.5164 21 1 3.2683 -4.2261 3.3365 22 6 2.4565 -4.8800 1.4641 23 7 1.4313 -4.7661 0.6465 24 14 3.7083 -6.2426 1.2084 25 1 4.7578 -6.1534 2.2553 26 1 3.0303 -7.5607 1.2975 27 1 4.3324 -6.0965 -0.1311 28 6 1.5297 -2.1658 1.2497 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.2490 -1.6317 -1.1528 33 1 2.6136 0.8461 -5.1147 34 1 3.7621 -4.3141 -4.2976 35 1 3.1641 -4.0295 -5.9499 36 1 4.8355 -3.5932 -5.5205 37 1 1.8683 1.0323 2.4889 38 1 0.4372 -0.0255 2.5095 39 1 1.7166 -0.1781 4.6386 40 1 3.1532 -0.7036 3.7278 41 1 0.4692 -2.1509 3.8912 42 1 2.0091 -2.6825 4.6117 43 1 1.3262 -5.3897 -0.0891 44 1 0.4437 -2.1696 1.1567 45 1 1.9719 -2.7098 0.4150 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025395478.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:39 Heat of formation + Delta-G solvation = 8.374590 kcal Electronic energy + Delta-G solvation = -28598.625180 eV Core-core repulsion = 24620.760736 eV Total energy + Delta-G solvation = -3977.864444 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.26556 -41.25590 -39.53500 -39.38849 -36.71784 -35.45038 -34.83327 -33.43293 -32.94907 -31.63852 -29.79069 -28.91110 -27.16642 -25.87859 -24.74559 -24.33999 -23.79571 -22.01745 -21.35396 -20.32588 -19.68714 -19.54153 -18.67449 -18.27459 -17.43514 -16.80950 -16.46001 -16.27578 -16.18813 -15.77005 -15.61245 -15.27328 -15.08326 -15.05036 -14.80348 -14.65121 -14.30867 -14.11434 -13.95108 -13.75740 -13.71306 -13.24862 -12.95339 -12.77514 -12.64678 -12.36139 -12.06723 -11.90678 -11.78677 -11.66380 -11.45348 -11.37116 -11.15401 -11.07844 -11.01623 -10.48492 -10.26711 -9.72504 -8.58865 -7.83103 -5.27186 -0.64163 0.49563 1.34627 1.46085 1.51196 1.59369 1.61362 1.80229 2.24295 2.53874 3.29233 3.35035 3.57245 3.65802 3.84203 3.96686 4.05160 4.17134 4.20271 4.25814 4.34871 4.42194 4.51745 4.55951 4.64450 4.66315 4.76900 4.79055 4.85197 4.90301 5.01116 5.08540 5.19736 5.22067 5.32518 5.38819 5.46947 5.50428 5.59715 5.72239 5.84702 6.12022 6.40521 6.44304 6.71776 6.78803 7.21215 7.91926 8.43246 9.22007 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010826 B = 0.004710 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.846935 B = 5943.002560 C = 8152.652836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.155 3.845 3 H 0.097 0.903 4 N -0.695 5.695 5 C 0.607 3.393 6 O -0.523 6.523 7 C 0.035 3.965 8 C -0.239 4.239 9 C 0.470 3.530 10 O -0.562 6.562 11 N -0.444 5.444 12 C 0.095 3.905 13 O 0.006 5.994 14 C -0.111 4.111 15 H 0.061 0.939 16 C -0.099 4.099 17 C -0.124 4.124 18 C 0.136 3.864 19 N -0.612 5.612 20 C -0.263 4.263 21 H 0.058 0.942 22 C -0.039 4.039 23 N -0.925 5.925 24 Si 0.954 3.046 25 H -0.276 1.276 26 H -0.297 1.297 27 H -0.282 1.282 28 C 0.185 3.815 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.412 0.588 33 H 0.206 0.794 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.051 0.949 41 H 0.014 0.986 42 H 0.046 0.954 43 H 0.250 0.750 44 H 0.009 0.991 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.591 7.456 -3.897 8.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.052 3.948 3 H 0.115 0.885 4 N -0.346 5.346 5 C 0.390 3.610 6 O -0.400 6.400 7 C -0.024 4.024 8 C -0.264 4.264 9 C 0.269 3.731 10 O -0.447 6.447 11 N -0.205 5.205 12 C -0.040 4.040 13 O -0.007 6.007 14 C -0.132 4.132 15 H 0.080 0.920 16 C -0.137 4.137 17 C -0.163 4.163 18 C 0.011 3.989 19 N -0.335 5.335 20 C -0.393 4.393 21 H 0.076 0.924 22 C -0.235 4.235 23 N -0.571 5.571 24 Si 0.783 3.217 25 H -0.201 1.201 26 H -0.224 1.224 27 H -0.209 1.209 28 C 0.059 3.941 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.249 0.751 33 H 0.223 0.777 34 H 0.134 0.866 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.070 0.930 41 H 0.032 0.968 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.027 0.973 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.575 7.796 -4.515 9.145 hybrid contribution 0.561 -1.619 -0.246 1.731 sum 2.136 6.177 -4.761 8.086 Atomic orbital electron populations 1.22225 0.94326 1.02372 1.02947 1.21146 0.94913 0.96595 0.82195 0.88495 1.46291 1.64104 1.15081 1.09081 1.16660 0.78179 0.85348 0.80855 1.90845 1.51102 1.14519 1.83538 1.23363 0.99543 0.81913 0.97614 1.23444 1.08082 1.03104 0.91769 1.18486 0.82967 0.83807 0.87837 1.90928 1.56365 1.83393 1.13995 1.46416 1.59648 1.14396 1.00030 1.22566 1.02353 0.75681 1.03421 1.84119 1.71499 1.26994 1.18050 1.21953 1.00086 0.97274 0.93856 0.92006 1.21453 1.00726 0.98721 0.92830 1.21884 1.00264 0.95852 0.98271 1.21098 0.96246 0.93158 0.88396 1.44304 1.65474 1.22410 1.01290 1.19472 1.17703 0.95186 1.06951 0.92393 1.25588 0.98458 0.99283 1.00191 1.70158 1.28502 1.39150 1.19257 0.85416 0.79279 0.79191 0.77796 1.20052 1.22409 1.20871 1.20705 0.95537 0.88975 0.88868 0.92524 0.92887 0.89488 0.75088 0.77715 0.86590 0.87813 0.87751 0.90320 0.91472 0.89990 0.92988 0.96813 0.93540 0.94018 0.97306 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.22 8.78 71.98 0.63 -3.59 16 2 C 0.16 4.23 2.40 44.99 0.11 4.34 16 3 H 0.10 2.49 7.58 -2.39 -0.02 2.47 16 4 N -0.70 -19.57 5.00 -445.08 -2.22 -21.80 16 5 C 0.61 16.97 7.80 86.89 0.68 17.64 16 6 O -0.52 -16.27 16.56 -3.69 -0.06 -16.33 16 7 C 0.03 0.92 7.25 24.47 0.18 1.10 16 8 C -0.24 -6.24 10.94 22.84 0.25 -5.99 16 9 C 0.47 13.66 8.02 85.25 0.68 14.35 16 10 O -0.56 -19.62 17.92 -5.25 -0.09 -19.71 16 11 N -0.44 -11.06 3.68 -492.72 -1.82 -12.87 16 12 C 0.09 1.59 11.18 127.77 1.43 3.02 16 13 O 0.01 0.14 10.69 70.48 0.75 0.90 16 14 C -0.11 -3.45 2.33 -10.72 -0.02 -3.48 16 15 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 16 C -0.10 -2.64 4.77 30.62 0.15 -2.49 16 17 C -0.12 -3.59 6.08 30.67 0.19 -3.40 16 18 C 0.14 5.18 6.52 86.36 0.56 5.74 16 19 N -0.61 -27.95 2.99 -699.09 -2.09 -30.05 16 20 C -0.26 -13.48 9.58 84.04 0.81 -12.67 16 21 H 0.06 2.98 7.88 -2.91 -0.02 2.96 16 22 C -0.04 -2.00 4.92 84.86 0.42 -1.58 16 23 N -0.92 -49.03 11.20 21.65 0.24 -48.79 16 24 Si 0.95 41.41 29.59 68.60 2.03 43.44 16 25 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.30 -13.13 7.11 99.48 0.71 -12.43 16 27 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 28 C 0.18 7.55 4.08 86.36 0.35 7.90 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.60 6.32 -2.39 -0.02 1.59 16 31 H 0.09 1.97 6.46 -2.39 -0.02 1.95 16 32 H 0.41 12.39 6.78 -92.71 -0.63 11.76 16 33 H 0.21 4.63 8.06 -2.91 -0.02 4.61 16 34 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.07 1.74 6.50 -2.39 -0.02 1.72 16 39 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 42 H 0.05 1.77 7.93 -2.39 -0.02 1.75 16 43 H 0.25 12.85 8.31 -92.70 -0.77 12.08 16 44 H 0.01 0.40 6.18 -2.39 -0.01 0.38 16 45 H 0.06 2.74 4.64 -2.38 -0.01 2.73 16 Total: -1.00 -64.74 363.54 3.53 -61.21 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.39 Total: 23.12 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: 6.40 Total: 20.88 kcal Atomic # 7 Polarization: -107.62 SS G_CDS: -5.89 Total: -113.50 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: 0.60 Total: -35.14 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -64.74 3.53 -61.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025395478.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.582 kcal (2) G-P(sol) polarization free energy of solvation -64.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds