Wall clock time and date at job start Tue Mar 31 2020 14:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35356 * 116.99695 * 2 1 4 4 N 1.30551 * 125.44646 * 179.97438 * 3 2 1 5 5 C 1.36326 * 108.38488 * 179.97438 * 4 3 2 6 6 C 1.47369 * 126.41565 * 179.97438 * 5 4 3 7 7 O 1.21622 * 120.00238 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99678 * 0.02562 * 6 5 4 9 9 C 1.46503 * 120.00303 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.46812 * 34.99756 * 9 8 6 11 11 C 1.53002 * 109.47108 * 275.00146 * 9 8 6 12 12 C 1.52994 * 109.47461 * 154.99631 * 9 8 6 13 13 H 1.08997 * 109.50040 * 305.06373 * 12 9 8 14 14 C 1.53039 * 109.49852 * 185.00035 * 12 9 8 15 15 C 1.53039 * 109.54019 * 178.68410 * 14 12 9 16 16 C 1.53191 * 109.31370 * 61.36811 * 15 14 12 17 17 N 1.46933 * 108.77443 * 305.36677 * 16 15 14 18 18 C 1.36933 * 120.63187 * 233.59063 * 17 16 15 19 19 H 1.08000 * 120.00528 * 151.84397 * 18 17 16 20 20 C 1.38819 * 119.99740 * 331.83729 * 18 17 16 21 21 N 1.31616 * 119.99988 * 343.07710 * 20 18 17 22 22 Si 1.86799 * 119.99793 * 163.07744 * 20 18 17 23 23 H 1.48501 * 109.47364 * 60.00336 * 22 20 18 24 24 H 1.48506 * 109.46891 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47172 * 299.99817 * 22 20 18 26 26 C 1.46927 * 118.73678 * 53.60362 * 17 16 15 27 27 C 1.35910 * 107.17481 * 0.22467 * 5 4 3 28 28 O 1.34204 * 125.45036 * 359.97438 * 3 2 1 29 29 H 1.09005 * 109.47095 * 299.99327 * 1 2 3 30 30 H 1.09005 * 109.47204 * 59.99616 * 1 2 3 31 31 H 1.09004 * 109.46787 * 179.97438 * 1 2 3 32 32 H 0.97004 * 120.00264 * 0.02562 * 8 6 5 33 33 H 1.09001 * 109.46966 * 299.99516 * 11 9 8 34 34 H 1.08999 * 109.46921 * 59.99288 * 11 9 8 35 35 H 1.08995 * 109.47353 * 179.97438 * 11 9 8 36 36 H 1.09001 * 109.46122 * 298.70628 * 14 12 9 37 37 H 1.08999 * 109.46385 * 58.66265 * 14 12 9 38 38 H 1.08999 * 109.49670 * 181.31498 * 15 14 12 39 39 H 1.08998 * 109.49558 * 301.41629 * 15 14 12 40 40 H 1.08994 * 109.59411 * 185.57934 * 16 15 14 41 41 H 1.09005 * 109.58628 * 65.14664 * 16 15 14 42 42 H 0.96999 * 120.00068 * 180.02562 * 21 20 18 43 43 H 1.09005 * 109.58491 * 186.60854 * 26 17 16 44 44 H 1.08999 * 109.58504 * 66.18432 * 26 17 16 45 45 H 1.08003 * 126.45809 * 179.77103 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2061 0.0000 4 7 3.3348 1.3979 0.0005 5 6 3.5700 2.7407 -0.0003 6 6 4.8891 3.3978 0.0004 7 8 4.9638 4.6117 0.0001 8 7 6.0127 2.6535 0.0015 9 6 7.3241 3.3066 0.0028 10 1 7.2734 4.2221 0.5922 11 6 7.7259 3.6466 -1.4339 12 6 8.3628 2.3638 0.6134 13 1 8.0319 2.0500 1.6034 14 6 9.7053 3.0893 0.7297 15 6 10.7367 2.1578 1.3706 16 6 10.9286 0.9257 0.4808 17 7 9.6183 0.3040 0.2448 18 6 9.4174 -1.0236 0.5134 19 1 8.4328 -1.3775 0.7812 20 6 10.4793 -1.9147 0.4411 21 7 11.5815 -1.5751 -0.1930 22 14 10.3440 -3.5960 1.2440 23 1 9.2087 -4.3414 0.6434 24 1 11.6037 -4.3516 1.0257 25 1 10.1124 -3.4313 2.7015 26 6 8.5278 1.1340 -0.2850 27 6 2.3602 3.3601 0.0038 28 8 1.4227 2.3959 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 5.9531 1.6853 0.0014 33 1 7.7766 2.7311 -2.0233 34 1 6.9858 4.3182 -1.8688 35 1 8.7013 4.1329 -1.4329 36 1 10.0473 3.3816 -0.2631 37 1 9.5851 3.9785 1.3484 38 1 11.6862 2.6829 1.4744 39 1 10.3836 1.8454 2.3533 40 1 11.5863 0.2137 0.9793 41 1 11.3667 1.2268 -0.4708 42 1 12.3234 -2.1979 -0.2438 43 1 7.6015 0.5595 -0.2917 44 1 8.7702 1.4520 -1.2990 45 1 2.1848 4.4257 0.0079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025490041.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:46 Heat of formation + Delta-G solvation = -25.392665 kcal Electronic energy + Delta-G solvation = -27786.569661 eV Core-core repulsion = 23807.240958 eV Total energy + Delta-G solvation = -3979.328702 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.69249 -39.83275 -39.09389 -37.95238 -35.18101 -35.14984 -32.94546 -31.09394 -30.39486 -30.20165 -28.04449 -27.80383 -25.24978 -25.02991 -23.38153 -22.60730 -22.09390 -20.89768 -20.15844 -19.25357 -18.45692 -17.78832 -17.44212 -16.73432 -16.54341 -15.78600 -15.63230 -15.52006 -14.84958 -14.82670 -14.31544 -14.10099 -13.74936 -13.70146 -13.39592 -13.03453 -12.69812 -12.51176 -12.31795 -12.30449 -12.21498 -11.76065 -11.58905 -11.27086 -10.98633 -10.94570 -10.86003 -10.51978 -10.43818 -10.25109 -10.14370 -10.00270 -9.80761 -9.55753 -9.34756 -9.03927 -8.81426 -8.40800 -6.60473 -5.74049 -3.16297 0.89129 1.63642 1.85439 2.46400 3.17045 3.25488 3.42394 3.47508 3.49429 4.30425 4.46766 4.53377 4.56762 4.64713 4.84657 5.01107 5.09443 5.24548 5.27823 5.44851 5.47884 5.52634 5.63510 5.73765 5.76539 5.90769 6.06502 6.17100 6.28171 6.30276 6.33102 6.39684 6.54202 6.65204 6.67040 6.75510 6.84364 6.91837 7.04564 7.24212 7.45075 7.66038 7.72088 7.84676 8.20602 8.50131 9.26495 9.89882 10.46688 11.34325 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011498 B = 0.003490 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.531340 B = 8020.140115 C =10132.221384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.242 6.242 3 C 0.381 3.619 4 N -0.451 5.451 5 C -0.043 4.043 6 C 0.602 3.398 7 O -0.542 6.542 8 N -0.698 5.698 9 C 0.148 3.852 10 H 0.084 0.916 11 C -0.165 4.165 12 C -0.113 4.113 13 H 0.073 0.927 14 C -0.100 4.100 15 C -0.142 4.142 16 C 0.170 3.830 17 N -0.590 5.590 18 C -0.253 4.253 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.903 5.903 22 Si 0.901 3.099 23 H -0.282 1.282 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.150 3.850 27 C -0.002 4.002 28 O -0.227 6.227 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.119 0.881 32 H 0.413 0.587 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.046 0.954 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.085 0.915 41 H 0.017 0.983 42 H 0.254 0.746 43 H 0.049 0.951 44 H 0.026 0.974 45 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.692 9.586 0.132 21.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.150 6.150 3 C 0.134 3.866 4 N -0.196 5.196 5 C -0.162 4.162 6 C 0.387 3.613 7 O -0.420 6.420 8 N -0.348 5.348 9 C 0.044 3.956 10 H 0.102 0.898 11 C -0.223 4.223 12 C -0.134 4.134 13 H 0.091 0.909 14 C -0.138 4.138 15 C -0.182 4.182 16 C 0.044 3.956 17 N -0.313 5.313 18 C -0.382 4.382 19 H 0.083 0.917 20 C -0.195 4.195 21 N -0.547 5.547 22 Si 0.731 3.269 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.211 1.211 26 C 0.023 3.977 27 C -0.074 4.074 28 O -0.118 6.118 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.137 0.863 32 H 0.250 0.750 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.104 0.896 41 H 0.035 0.965 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.044 0.956 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -19.018 9.563 0.095 21.287 hybrid contribution -0.879 -0.881 0.401 1.307 sum -19.897 8.683 0.495 21.715 Atomic orbital electron populations 1.23305 0.75169 1.05714 1.02902 1.86426 1.23592 1.15754 1.89208 1.23399 0.85624 0.79527 0.98027 1.71175 1.09697 1.15643 1.23090 1.21779 0.96020 0.88376 1.10050 1.16649 0.82016 0.85963 0.76707 1.90811 1.86781 1.12677 1.51751 1.46055 1.05232 1.11310 1.72231 1.21126 0.80816 0.96329 0.97314 0.89789 1.22266 1.01542 1.02161 0.96359 1.21959 0.93930 0.96797 1.00721 0.90877 1.21418 0.94685 0.97173 1.00508 1.22182 0.97049 0.98549 1.00391 1.20788 0.87945 0.91476 0.95381 1.44011 1.07337 1.06011 1.73903 1.19155 0.95760 0.83244 1.40069 0.91741 1.25020 0.97689 0.97622 0.99193 1.70026 1.05952 1.36065 1.42698 0.86389 0.76828 0.84080 0.79610 1.20864 1.21687 1.21074 1.21014 0.92437 0.90275 0.93926 1.24935 0.84953 0.93737 1.03796 1.84380 1.39580 1.15900 1.71966 0.91432 0.91434 0.86260 0.75007 0.91439 0.92844 0.91242 0.92213 0.93532 0.93249 0.92812 0.89637 0.96469 0.93651 0.93227 0.95628 0.74807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 10.73 101.05 1.08 1.20 16 2 O -0.24 -2.46 10.55 -40.99 -0.43 -2.89 16 3 C 0.38 4.51 8.98 52.22 0.47 4.98 16 4 N -0.45 -6.42 11.10 -11.72 -0.13 -6.55 16 5 C -0.04 -0.57 6.99 -82.99 -0.58 -1.15 16 6 C 0.60 8.99 7.78 -12.55 -0.10 8.89 16 7 O -0.54 -8.93 16.55 5.26 0.09 -8.84 16 8 N -0.70 -10.50 5.01 -54.90 -0.28 -10.78 16 9 C 0.15 2.24 2.35 -67.93 -0.16 2.08 16 10 H 0.08 1.29 7.58 -51.93 -0.39 0.89 16 11 C -0.17 -2.37 8.76 37.16 0.33 -2.05 16 12 C -0.11 -1.94 2.27 -90.50 -0.21 -2.15 16 13 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 14 C -0.10 -1.66 4.89 -26.69 -0.13 -1.79 16 15 C -0.14 -2.73 6.08 -26.61 -0.16 -2.89 16 16 C 0.17 4.05 5.30 -3.71 -0.02 4.03 16 17 N -0.59 -14.73 2.99 -172.31 -0.52 -15.24 16 18 C -0.25 -6.97 9.58 -15.06 -0.14 -7.11 16 19 H 0.06 1.75 7.88 -52.49 -0.41 1.34 16 20 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 21 N -0.90 -26.32 11.20 55.49 0.62 -25.70 16 22 Si 0.90 21.90 29.59 -169.99 -5.03 16.87 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 C 0.15 3.08 5.26 -3.71 -0.02 3.06 16 27 C 0.00 -0.02 11.93 29.90 0.36 0.34 16 28 O -0.23 -2.25 10.20 -17.75 -0.18 -2.43 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.41 6.38 7.01 -40.82 -0.29 6.09 16 33 H 0.07 1.02 6.23 -51.93 -0.32 0.69 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.94 6.60 -51.93 -0.34 0.60 16 36 H 0.06 0.98 6.63 -51.93 -0.34 0.63 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.09 2.29 6.06 -51.93 -0.31 1.98 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.05 1.01 6.75 -51.93 -0.35 0.66 16 44 H 0.03 0.54 6.06 -51.93 -0.31 0.22 16 45 H 0.24 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 364.77 15.07 5.50 5.50 Total: -1.00 -32.77 364.77 -6.17 -38.95 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.45 Total: 3.67 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: 0.63 Total: 7.45 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: -0.30 Total: -58.28 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.53 Total: -14.17 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.77 -6.17 -38.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025490041.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.555 kcal (2) G-P(sol) polarization free energy of solvation -32.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds