Wall clock time and date at job start Tue Mar 31 2020 14:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35356 * 116.99695 * 2 1 4 4 N 1.30551 * 125.44646 * 179.97438 * 3 2 1 5 5 C 1.36326 * 108.38488 * 179.97438 * 4 3 2 6 6 C 1.47369 * 126.41565 * 179.97438 * 5 4 3 7 7 O 1.21622 * 120.00238 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99678 * 0.02562 * 6 5 4 9 9 C 1.46503 * 120.00303 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.46812 * 34.99756 * 9 8 6 11 11 C 1.53002 * 109.47108 * 275.00146 * 9 8 6 12 12 C 1.52994 * 109.47461 * 154.99631 * 9 8 6 13 13 H 1.08997 * 109.50040 * 305.06373 * 12 9 8 14 14 C 1.53039 * 109.49852 * 185.00035 * 12 9 8 15 15 C 1.53039 * 109.54019 * 178.68410 * 14 12 9 16 16 C 1.53191 * 109.31370 * 61.36811 * 15 14 12 17 17 N 1.46933 * 108.77443 * 305.36677 * 16 15 14 18 18 C 1.36933 * 120.63187 * 233.59063 * 17 16 15 19 19 H 1.08000 * 120.00528 * 151.84397 * 18 17 16 20 20 C 1.38819 * 119.99740 * 331.83729 * 18 17 16 21 21 N 1.31616 * 119.99988 * 343.07710 * 20 18 17 22 22 Si 1.86799 * 119.99793 * 163.07744 * 20 18 17 23 23 H 1.48501 * 109.47364 * 60.00336 * 22 20 18 24 24 H 1.48506 * 109.46891 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47172 * 299.99817 * 22 20 18 26 26 C 1.46927 * 118.73678 * 53.60362 * 17 16 15 27 27 C 1.35910 * 107.17481 * 0.22467 * 5 4 3 28 28 O 1.34204 * 125.45036 * 359.97438 * 3 2 1 29 29 H 1.09005 * 109.47095 * 299.99327 * 1 2 3 30 30 H 1.09005 * 109.47204 * 59.99616 * 1 2 3 31 31 H 1.09004 * 109.46787 * 179.97438 * 1 2 3 32 32 H 0.97004 * 120.00264 * 0.02562 * 8 6 5 33 33 H 1.09001 * 109.46966 * 299.99516 * 11 9 8 34 34 H 1.08999 * 109.46921 * 59.99288 * 11 9 8 35 35 H 1.08995 * 109.47353 * 179.97438 * 11 9 8 36 36 H 1.09001 * 109.46122 * 298.70628 * 14 12 9 37 37 H 1.08999 * 109.46385 * 58.66265 * 14 12 9 38 38 H 1.08999 * 109.49670 * 181.31498 * 15 14 12 39 39 H 1.08998 * 109.49558 * 301.41629 * 15 14 12 40 40 H 1.08994 * 109.59411 * 185.57934 * 16 15 14 41 41 H 1.09005 * 109.58628 * 65.14664 * 16 15 14 42 42 H 0.96999 * 120.00068 * 180.02562 * 21 20 18 43 43 H 1.09005 * 109.58491 * 186.60854 * 26 17 16 44 44 H 1.08999 * 109.58504 * 66.18432 * 26 17 16 45 45 H 1.08003 * 126.45809 * 179.77103 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2061 0.0000 4 7 3.3348 1.3979 0.0005 5 6 3.5700 2.7407 -0.0003 6 6 4.8891 3.3978 0.0004 7 8 4.9638 4.6117 0.0001 8 7 6.0127 2.6535 0.0015 9 6 7.3241 3.3066 0.0028 10 1 7.2734 4.2221 0.5922 11 6 7.7259 3.6466 -1.4339 12 6 8.3628 2.3638 0.6134 13 1 8.0319 2.0500 1.6034 14 6 9.7053 3.0893 0.7297 15 6 10.7367 2.1578 1.3706 16 6 10.9286 0.9257 0.4808 17 7 9.6183 0.3040 0.2448 18 6 9.4174 -1.0236 0.5134 19 1 8.4328 -1.3775 0.7812 20 6 10.4793 -1.9147 0.4411 21 7 11.5815 -1.5751 -0.1930 22 14 10.3440 -3.5960 1.2440 23 1 9.2087 -4.3414 0.6434 24 1 11.6037 -4.3516 1.0257 25 1 10.1124 -3.4313 2.7015 26 6 8.5278 1.1340 -0.2850 27 6 2.3602 3.3601 0.0038 28 8 1.4227 2.3959 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 5.9531 1.6853 0.0014 33 1 7.7766 2.7311 -2.0233 34 1 6.9858 4.3182 -1.8688 35 1 8.7013 4.1329 -1.4329 36 1 10.0473 3.3816 -0.2631 37 1 9.5851 3.9785 1.3484 38 1 11.6862 2.6829 1.4744 39 1 10.3836 1.8454 2.3533 40 1 11.5863 0.2137 0.9793 41 1 11.3667 1.2268 -0.4708 42 1 12.3234 -2.1979 -0.2438 43 1 7.6015 0.5595 -0.2917 44 1 8.7702 1.4520 -1.2990 45 1 2.1848 4.4257 0.0079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025490041.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:45 Heat of formation + Delta-G solvation = -50.934102 kcal Electronic energy + Delta-G solvation = -27787.677220 eV Core-core repulsion = 23807.240958 eV Total energy + Delta-G solvation = -3980.436262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.54685 -41.03370 -39.83705 -39.40565 -36.68980 -36.08050 -34.64821 -32.52963 -32.23033 -31.11505 -29.46439 -28.30962 -27.21010 -26.13490 -24.64386 -23.86357 -23.46837 -22.18621 -21.43112 -20.37381 -19.78367 -18.71216 -18.59102 -18.30773 -17.41575 -17.00044 -16.84200 -16.35237 -16.28399 -15.98814 -15.68796 -15.66018 -15.16708 -14.95727 -14.69453 -14.54607 -14.06210 -13.94637 -13.68825 -13.30209 -13.10178 -13.01879 -12.96110 -12.73787 -12.69836 -12.30019 -12.10784 -12.03839 -11.94508 -11.89248 -11.69689 -11.50752 -11.39370 -11.13149 -11.03689 -10.50127 -10.16190 -9.75152 -8.62880 -7.85258 -5.30212 0.02317 0.86770 0.90467 1.46933 1.49048 1.55819 1.72496 2.11277 2.18958 2.52392 3.28880 3.34358 3.60849 3.75394 3.93201 4.00684 4.06953 4.12408 4.21385 4.24723 4.37448 4.39638 4.44613 4.49576 4.64206 4.67014 4.69155 4.71328 4.87879 4.90592 4.98493 5.06939 5.16206 5.22343 5.31896 5.37189 5.46310 5.51384 5.59215 5.60231 5.69739 5.81723 6.30260 6.41499 6.56878 7.05141 7.17716 7.89474 8.40590 9.20495 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011498 B = 0.003490 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.531340 B = 8020.140115 C =10132.221384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.259 6.259 3 C 0.381 3.619 4 N -0.490 5.490 5 C -0.080 4.080 6 C 0.605 3.395 7 O -0.560 6.560 8 N -0.703 5.703 9 C 0.157 3.843 10 H 0.091 0.909 11 C -0.159 4.159 12 C -0.098 4.098 13 H 0.062 0.938 14 C -0.096 4.096 15 C -0.132 4.132 16 C 0.174 3.826 17 N -0.609 5.609 18 C -0.264 4.264 19 H 0.063 0.937 20 C -0.048 4.048 21 N -0.933 5.933 22 Si 0.963 3.037 23 H -0.276 1.276 24 H -0.293 1.293 25 H -0.279 1.279 26 C 0.151 3.849 27 C 0.032 3.968 28 O -0.214 6.214 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.143 0.857 32 H 0.409 0.591 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.047 0.953 40 H 0.050 0.950 41 H -0.002 1.002 42 H 0.250 0.750 43 H 0.043 0.957 44 H 0.025 0.975 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.734 10.926 0.666 24.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.167 6.167 3 C 0.135 3.865 4 N -0.236 5.236 5 C -0.198 4.198 6 C 0.391 3.609 7 O -0.440 6.440 8 N -0.352 5.352 9 C 0.053 3.947 10 H 0.109 0.891 11 C -0.217 4.217 12 C -0.119 4.119 13 H 0.081 0.919 14 C -0.134 4.134 15 C -0.171 4.171 16 C 0.048 3.952 17 N -0.332 5.332 18 C -0.394 4.394 19 H 0.080 0.920 20 C -0.243 4.243 21 N -0.579 5.579 22 Si 0.792 3.208 23 H -0.202 1.202 24 H -0.219 1.219 25 H -0.206 1.206 26 C 0.026 3.974 27 C -0.040 4.040 28 O -0.105 6.105 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.161 0.839 32 H 0.246 0.754 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.016 0.984 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.042 0.958 45 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -21.098 10.917 0.632 23.764 hybrid contribution -0.369 -1.308 0.200 1.374 sum -21.467 9.609 0.832 23.535 Atomic orbital electron populations 1.23705 0.72552 1.07692 1.03999 1.86439 1.26256 1.15063 1.88977 1.23414 0.85432 0.80364 0.97316 1.71054 1.11367 1.16517 1.24692 1.21620 0.96206 0.88563 1.13424 1.16802 0.82463 0.85737 0.75888 1.90788 1.87184 1.13229 1.52793 1.46075 1.05472 1.11130 1.72524 1.21001 0.80333 0.95707 0.97665 0.89087 1.22211 1.02271 1.01698 0.95540 1.21735 0.95203 0.95645 0.99296 0.91927 1.21411 0.93178 0.97445 1.01326 1.22019 0.99171 0.96979 0.98900 1.20632 0.87018 0.92542 0.94962 1.44268 1.08536 1.05857 1.74549 1.19458 0.95742 0.84740 1.39506 0.91978 1.25737 0.97532 1.01039 1.00001 1.70175 1.06519 1.37085 1.44147 0.85405 0.76640 0.80082 0.78722 1.20222 1.21864 1.20566 1.21101 0.90794 0.91064 0.94488 1.25617 0.83779 0.94795 0.99853 1.84426 1.39080 1.15428 1.71518 0.90328 0.90314 0.83914 0.75441 0.92638 0.92515 0.90072 0.91510 0.90324 0.90978 0.93448 0.93168 0.98418 0.94134 0.93807 0.95753 0.71289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 10.73 113.37 1.22 1.33 16 2 O -0.26 -5.00 10.55 -64.25 -0.68 -5.68 16 3 C 0.38 8.66 8.98 130.43 1.17 9.83 16 4 N -0.49 -13.84 11.10 -419.39 -4.65 -18.49 16 5 C -0.08 -2.05 6.99 40.31 0.28 -1.77 16 6 C 0.60 17.52 7.78 86.65 0.67 18.19 16 7 O -0.56 -17.57 16.55 -4.10 -0.07 -17.64 16 8 N -0.70 -20.83 5.01 -445.84 -2.23 -23.07 16 9 C 0.16 4.54 2.35 44.99 0.11 4.65 16 10 H 0.09 2.58 7.58 -2.39 -0.02 2.56 16 11 C -0.16 -4.35 8.76 71.98 0.63 -3.72 16 12 C -0.10 -3.27 2.27 -10.72 -0.02 -3.30 16 13 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 14 C -0.10 -2.99 4.89 30.62 0.15 -2.84 16 15 C -0.13 -4.91 6.08 30.67 0.19 -4.72 16 16 C 0.17 8.49 5.30 86.36 0.46 8.94 16 17 N -0.61 -31.02 2.99 -699.07 -2.09 -33.11 16 18 C -0.26 -14.89 9.58 84.04 0.81 -14.09 16 19 H 0.06 3.45 7.88 -2.91 -0.02 3.43 16 20 C -0.05 -2.71 4.92 84.86 0.42 -2.29 16 21 N -0.93 -56.02 11.20 21.65 0.24 -55.77 16 22 Si 0.96 45.84 29.59 68.60 2.03 47.87 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 25 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 26 C 0.15 6.26 5.26 86.36 0.45 6.71 16 27 C 0.03 0.57 11.93 67.28 0.80 1.37 16 28 O -0.21 -3.77 10.20 18.90 0.19 -3.57 16 29 H 0.08 0.45 8.14 -2.38 -0.02 0.44 16 30 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.14 0.42 8.14 -2.38 -0.02 0.40 16 32 H 0.41 12.82 7.01 -92.71 -0.65 12.17 16 33 H 0.05 1.64 6.23 -2.39 -0.01 1.63 16 34 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.08 2.02 6.60 -2.39 -0.02 2.00 16 36 H 0.07 2.02 6.63 -2.39 -0.02 2.01 16 37 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.05 2.78 6.06 -2.39 -0.01 2.77 16 41 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 42 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 43 H 0.04 1.83 6.75 -2.38 -0.02 1.81 16 44 H 0.02 1.03 6.06 -2.39 -0.01 1.02 16 45 H 0.27 2.55 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -72.45 364.77 0.44 -72.01 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.37 Total: 19.17 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: 7.33 Total: 18.29 kcal Atomic # 7 Polarization: -121.71 SS G_CDS: -8.74 Total: -130.45 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.55 Total: -26.89 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -72.45 0.44 -72.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025490041.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.079 kcal (2) G-P(sol) polarization free energy of solvation -72.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds