Wall clock time and date at job start Tue Mar 31 2020 14:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35353 * 116.99761 * 2 1 4 4 N 1.30548 * 125.44241 * 179.97438 * 3 2 1 5 5 C 1.36327 * 108.38195 * 180.02562 * 4 3 2 6 6 C 1.47374 * 126.41221 * 179.97438 * 5 4 3 7 7 O 1.21623 * 119.99661 * 180.02562 * 6 5 4 8 8 N 1.34773 * 120.00221 * 0.02818 * 6 5 4 9 9 C 1.46497 * 119.99999 * 179.97438 * 8 6 5 10 10 H 1.08994 * 109.47255 * 34.99879 * 9 8 6 11 11 C 1.52996 * 109.47432 * 274.99743 * 9 8 6 12 12 C 1.53003 * 109.46925 * 154.99468 * 9 8 6 13 13 H 1.09000 * 109.49431 * 60.06857 * 12 9 8 14 14 C 1.53044 * 109.49776 * 180.16117 * 12 9 8 15 15 C 1.53038 * 109.53941 * 181.31995 * 14 12 9 16 16 C 1.53187 * 109.31332 * 298.63587 * 15 14 12 17 17 N 1.46931 * 108.77838 * 54.63369 * 16 15 14 18 18 C 1.36934 * 120.63213 * 126.37007 * 17 16 15 19 19 H 1.08004 * 119.99733 * 208.02628 * 18 17 16 20 20 C 1.38807 * 120.00212 * 28.02374 * 18 17 16 21 21 N 1.31630 * 119.99731 * 17.52539 * 20 18 17 22 22 Si 1.86793 * 120.00422 * 197.52426 * 20 18 17 23 23 H 1.48502 * 109.47348 * 94.06560 * 22 20 18 24 24 H 1.48500 * 109.47493 * 214.06524 * 22 20 18 25 25 H 1.48500 * 109.47208 * 334.06887 * 22 20 18 26 26 C 1.46932 * 118.73531 * 306.39551 * 17 16 15 27 27 C 1.35914 * 107.17528 * 0.22384 * 5 4 3 28 28 O 1.34194 * 125.44948 * 0.03856 * 3 2 1 29 29 H 1.09003 * 109.47103 * 60.00519 * 1 2 3 30 30 H 1.09002 * 109.47428 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47717 * 300.00362 * 1 2 3 32 32 H 0.96999 * 119.99954 * 359.97438 * 8 6 5 33 33 H 1.09004 * 109.47233 * 59.99666 * 11 9 8 34 34 H 1.08994 * 109.47322 * 180.02562 * 11 9 8 35 35 H 1.09004 * 109.46858 * 300.00134 * 11 9 8 36 36 H 1.09007 * 109.45682 * 301.33911 * 14 12 9 37 37 H 1.08997 * 109.46118 * 61.29530 * 14 12 9 38 38 H 1.09002 * 109.49992 * 178.68452 * 15 14 12 39 39 H 1.08999 * 109.52263 * 58.59929 * 15 14 12 40 40 H 1.09000 * 109.58705 * 294.84738 * 16 15 14 41 41 H 1.08994 * 109.70827 * 174.49364 * 16 15 14 42 42 H 0.97002 * 119.99574 * 179.97438 * 21 20 18 43 43 H 1.08999 * 109.58753 * 293.81495 * 26 17 16 44 44 H 1.08997 * 109.58337 * 173.39070 * 26 17 16 45 45 H 1.07997 * 126.45882 * 179.74820 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2060 0.0000 4 7 3.3348 1.3978 0.0005 5 6 3.5700 2.7406 0.0009 6 6 4.8892 3.3976 0.0020 7 8 4.9639 4.6115 0.0027 8 7 6.0128 2.6533 0.0022 9 6 7.3241 3.3064 0.0027 10 1 7.2738 4.2217 0.5923 11 6 7.7251 3.6466 -1.4340 12 6 8.3632 2.3634 0.6126 13 1 8.4147 1.4484 0.0226 14 6 9.7327 3.0467 0.6172 15 6 10.7790 2.0921 1.1967 16 6 10.4056 1.7479 2.6420 17 7 9.0330 1.2241 2.6639 18 6 8.7569 0.0148 3.2439 19 1 7.9206 -0.5729 2.8951 20 6 9.5519 -0.4558 4.2799 21 7 10.3369 0.3727 4.9355 22 14 9.5076 -2.2647 4.7437 23 1 10.5927 -2.9853 4.0306 24 1 9.7005 -2.4048 6.2095 25 1 8.1944 -2.8422 4.3598 26 6 7.9624 2.0224 2.0512 27 6 2.3602 3.3600 0.0057 28 8 1.4227 2.3958 0.0007 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 5.9532 1.6851 0.0019 33 1 6.9847 4.3184 -1.8685 34 1 8.7009 4.1321 -1.4336 35 1 7.7753 2.7312 -2.0236 36 1 10.0092 3.3125 -0.4032 37 1 9.6864 3.9487 1.2274 38 1 11.7582 2.5707 1.1781 39 1 10.8088 1.1794 0.6016 40 1 10.4641 2.6452 3.2581 41 1 11.0907 0.9938 3.0290 42 1 10.8922 0.0439 5.6597 43 1 7.8216 2.9421 2.6191 44 1 7.0359 1.4483 2.0460 45 1 2.1849 4.4256 0.0111 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025490042.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:48 Heat of formation + Delta-G solvation = -53.651678 kcal Electronic energy + Delta-G solvation = -27803.356110 eV Core-core repulsion = 23822.802005 eV Total energy + Delta-G solvation = -3980.554105 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.54674 -40.98916 -39.82351 -39.34703 -36.72772 -36.07960 -34.65854 -32.61322 -32.12815 -31.10424 -29.86801 -28.31008 -27.16463 -25.94113 -24.45447 -23.61674 -23.46009 -22.10427 -21.51044 -20.83354 -19.89876 -18.68701 -18.58798 -18.32975 -17.41894 -17.11957 -16.80985 -16.36659 -16.24497 -15.88528 -15.82696 -15.38164 -15.12289 -14.94454 -14.68152 -14.53260 -14.12167 -14.01201 -13.70122 -13.27292 -13.10385 -13.01659 -12.95485 -12.78097 -12.61718 -12.28058 -12.21376 -12.08333 -11.95827 -11.90805 -11.75552 -11.51336 -11.42090 -11.15125 -11.01022 -10.53485 -10.14752 -9.74863 -8.67374 -7.87248 -5.32974 0.02274 0.86275 0.91365 1.45885 1.46879 1.56528 1.71825 2.11108 2.20698 2.50716 3.26400 3.35247 3.56065 3.75215 3.93801 4.01875 4.06494 4.12886 4.21253 4.24638 4.36737 4.40545 4.46235 4.52300 4.64147 4.65208 4.68603 4.78048 4.88170 4.89254 4.95927 5.06798 5.12499 5.24954 5.28830 5.35214 5.46857 5.51703 5.57943 5.60059 5.67709 5.79810 6.30249 6.39203 6.57522 7.07011 7.15228 7.86399 8.38200 9.18733 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010843 B = 0.003628 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.627630 B = 7715.018054 C = 9806.693739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.258 6.258 3 C 0.381 3.619 4 N -0.487 5.487 5 C -0.079 4.079 6 C 0.604 3.396 7 O -0.562 6.562 8 N -0.699 5.699 9 C 0.153 3.847 10 H 0.075 0.925 11 C -0.152 4.152 12 C -0.095 4.095 13 H 0.074 0.926 14 C -0.096 4.096 15 C -0.130 4.130 16 C 0.172 3.828 17 N -0.609 5.609 18 C -0.263 4.263 19 H 0.063 0.937 20 C -0.049 4.049 21 N -0.935 5.935 22 Si 0.966 3.034 23 H -0.283 1.283 24 H -0.295 1.295 25 H -0.270 1.270 26 C 0.156 3.844 27 C 0.030 3.970 28 O -0.214 6.214 29 H 0.080 0.920 30 H 0.144 0.856 31 H 0.075 0.925 32 H 0.411 0.589 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.053 0.947 40 H -0.008 1.008 41 H 0.051 0.949 42 H 0.250 0.750 43 H 0.000 1.000 44 H 0.044 0.956 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.838 4.671 -15.180 23.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.166 6.166 3 C 0.134 3.866 4 N -0.233 5.233 5 C -0.196 4.196 6 C 0.390 3.610 7 O -0.442 6.442 8 N -0.348 5.348 9 C 0.049 3.951 10 H 0.093 0.907 11 C -0.210 4.210 12 C -0.116 4.116 13 H 0.092 0.908 14 C -0.134 4.134 15 C -0.169 4.169 16 C 0.047 3.953 17 N -0.332 5.332 18 C -0.393 4.393 19 H 0.081 0.919 20 C -0.245 4.245 21 N -0.581 5.581 22 Si 0.794 3.206 23 H -0.210 1.210 24 H -0.221 1.221 25 H -0.194 1.194 26 C 0.030 3.970 27 C -0.043 4.043 28 O -0.105 6.105 29 H 0.098 0.902 30 H 0.162 0.838 31 H 0.094 0.906 32 H 0.247 0.753 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.010 0.990 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.018 0.982 44 H 0.063 0.937 45 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -17.255 4.731 -15.037 23.371 hybrid contribution -0.567 -0.923 0.995 1.471 sum -17.821 3.809 -14.042 23.006 Atomic orbital electron populations 1.23702 0.72578 1.07719 1.03956 1.86430 1.26223 1.14996 1.88982 1.23427 0.85470 0.80359 0.97314 1.71031 1.11288 1.16351 1.24665 1.21614 0.96154 0.88630 1.13250 1.16806 0.82552 0.85733 0.75916 1.90791 1.87198 1.13427 1.52825 1.45962 1.05361 1.11058 1.72440 1.21025 0.80532 0.95586 0.97976 0.90713 1.22134 1.02472 1.02150 0.94289 1.21750 0.95101 0.98340 0.96361 0.90767 1.21441 0.92895 0.97411 1.01623 1.22004 0.98631 0.99188 0.97099 1.20653 0.86061 0.95639 0.92961 1.44310 1.03080 1.19728 1.66065 1.19512 1.13839 0.94842 1.11133 0.91887 1.25779 1.00824 1.01921 0.95955 1.70211 1.30616 1.34423 1.22849 0.85272 0.78168 0.80609 0.76543 1.20992 1.22124 1.19435 1.20940 0.90973 0.93042 0.92043 1.25592 0.83876 0.94788 1.00053 1.84419 1.39078 1.15458 1.71542 0.90158 0.83811 0.90615 0.75323 0.92760 0.89529 0.91649 0.89148 0.92745 0.90945 0.92810 0.99013 0.93038 0.94122 0.98219 0.93706 0.71479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 10.73 113.37 1.22 1.33 16 2 O -0.26 -5.00 10.55 -64.22 -0.68 -5.68 16 3 C 0.38 8.80 8.98 130.43 1.17 9.97 16 4 N -0.49 -13.83 11.10 -419.40 -4.65 -18.49 16 5 C -0.08 -2.08 6.99 40.31 0.28 -1.80 16 6 C 0.60 18.12 7.78 86.65 0.67 18.80 16 7 O -0.56 -18.66 16.55 -4.10 -0.07 -18.72 16 8 N -0.70 -20.67 4.47 -445.86 -1.99 -22.66 16 9 C 0.15 4.42 2.16 44.99 0.10 4.52 16 10 H 0.07 2.40 7.58 -2.39 -0.02 2.38 16 11 C -0.15 -3.52 9.14 71.98 0.66 -2.87 16 12 C -0.10 -3.15 1.97 -10.72 -0.02 -3.17 16 13 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 14 C -0.10 -2.98 4.86 30.62 0.15 -2.83 16 15 C -0.13 -4.81 6.08 30.67 0.19 -4.63 16 16 C 0.17 8.54 5.31 86.36 0.46 9.00 16 17 N -0.61 -31.66 2.99 -699.10 -2.09 -33.76 16 18 C -0.26 -15.00 9.58 84.03 0.80 -14.20 16 19 H 0.06 3.54 7.89 -2.91 -0.02 3.52 16 20 C -0.05 -2.84 4.90 84.86 0.42 -2.42 16 21 N -0.93 -56.83 11.22 21.65 0.24 -56.58 16 22 Si 0.97 46.08 29.59 68.60 2.03 48.11 16 23 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 24 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 25 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 26 C 0.16 6.78 5.55 86.36 0.48 7.26 16 27 C 0.03 0.56 11.93 67.28 0.80 1.36 16 28 O -0.21 -3.97 10.20 18.97 0.19 -3.77 16 29 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.14 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.41 12.26 8.14 -92.71 -0.75 11.50 16 33 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.09 1.72 6.40 -2.39 -0.02 1.71 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 2.18 6.36 -2.38 -0.02 2.16 16 37 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 40 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 41 H 0.05 2.88 6.06 -2.39 -0.01 2.87 16 42 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 43 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 44 H 0.04 1.98 7.44 -2.39 -0.02 1.96 16 45 H 0.27 2.96 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -74.42 369.76 0.61 -73.81 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.25 Total: 17.42 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 7.37 Total: 20.33 kcal Atomic # 7 Polarization: -122.99 SS G_CDS: -8.50 Total: -131.48 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.55 Total: -28.18 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -74.42 0.61 -73.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025490042.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.158 kcal (2) G-P(sol) polarization free energy of solvation -74.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds