Wall clock time and date at job start Tue Mar 31 2020 14:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35349 * 117.00048 * 2 1 4 4 N 1.30550 * 125.44541 * 180.33259 * 3 2 1 5 5 C 1.36334 * 108.38097 * 180.12670 * 4 3 2 6 6 C 1.47367 * 126.41135 * 179.82325 * 5 4 3 7 7 O 1.21630 * 119.99776 * 179.68819 * 6 5 4 8 8 N 1.34770 * 120.00389 * 359.69154 * 6 5 4 9 9 C 1.46499 * 120.00347 * 179.97438 * 8 6 5 10 10 H 1.09005 * 109.47027 * 324.99873 * 9 8 6 11 11 C 1.52997 * 109.46933 * 85.00002 * 9 8 6 12 12 C 1.53004 * 109.47280 * 205.00474 * 9 8 6 13 13 H 1.08996 * 109.52294 * 60.07489 * 12 9 8 14 14 C 1.53041 * 109.49891 * 180.16437 * 12 9 8 15 15 C 1.53346 * 109.60691 * 181.32587 * 14 12 9 16 16 C 1.53197 * 109.14722 * 298.70820 * 15 14 12 17 17 N 1.46924 * 108.89567 * 54.57868 * 16 15 14 18 18 C 1.36933 * 120.63197 * 126.34022 * 17 16 15 19 19 H 1.07995 * 119.99809 * 332.53041 * 18 17 16 20 20 C 1.38814 * 120.00193 * 152.52492 * 18 17 16 21 21 N 1.31612 * 120.00114 * 159.33007 * 20 18 17 22 22 Si 1.86806 * 119.99760 * 339.33149 * 20 18 17 23 23 H 1.48501 * 109.46946 * 92.94630 * 22 20 18 24 24 H 1.48496 * 109.46962 * 212.95100 * 22 20 18 25 25 H 1.48503 * 109.47163 * 332.94864 * 22 20 18 26 26 C 1.46925 * 118.73691 * 306.32228 * 17 16 15 27 27 C 1.35920 * 107.17389 * 359.56667 * 5 4 3 28 28 O 1.34200 * 125.44518 * 359.97096 * 3 2 1 29 29 H 1.09007 * 109.47044 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47722 * 300.00552 * 1 2 3 31 31 H 1.09007 * 109.46721 * 60.00453 * 1 2 3 32 32 H 0.97001 * 119.99974 * 0.02562 * 8 6 5 33 33 H 1.09001 * 109.47062 * 179.97438 * 11 9 8 34 34 H 1.08997 * 109.47118 * 299.99992 * 11 9 8 35 35 H 1.08996 * 109.46880 * 60.00710 * 11 9 8 36 36 H 1.09005 * 109.45325 * 301.33561 * 14 12 9 37 37 H 1.08993 * 109.46240 * 61.30263 * 14 12 9 38 38 H 1.08996 * 109.68429 * 178.74618 * 15 14 12 39 39 H 1.08997 * 109.47922 * 58.54114 * 15 14 12 40 40 H 1.09007 * 109.58226 * 294.72254 * 16 15 14 41 41 H 1.08998 * 109.58746 * 174.43881 * 16 15 14 42 42 H 0.97001 * 120.00103 * 180.02562 * 21 20 18 43 43 H 1.09006 * 109.58897 * 173.39354 * 26 17 16 44 44 H 1.08995 * 109.59177 * 293.67653 * 26 17 16 45 45 H 1.07999 * 126.45510 * 180.26463 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 7 3.3348 1.3977 -0.0062 5 6 3.5701 2.7406 -0.0010 6 6 4.8892 3.3975 -0.0014 7 8 4.9640 4.6115 -0.0021 8 7 6.0128 2.6533 -0.0011 9 6 7.3241 3.3064 -0.0021 10 1 7.2739 4.2214 -0.5924 11 6 7.7250 3.6476 1.4345 12 6 8.3633 2.3630 -0.6113 13 1 8.0792 2.1205 -1.6352 14 6 9.7343 3.0431 -0.6089 15 6 10.7714 2.1126 -1.2491 16 6 10.8665 0.8241 -0.4261 17 7 9.5244 0.2393 -0.3011 18 6 9.2939 -1.0616 -0.6610 19 1 9.9083 -1.5300 -1.4157 20 6 8.2708 -1.7784 -0.0559 21 7 7.7768 -2.8461 -0.6461 22 14 7.5949 -1.2276 1.5962 23 1 6.4247 -0.3390 1.3809 24 1 7.1759 -2.4166 2.3809 25 1 8.6469 -0.4892 2.3401 26 6 8.4345 1.0768 0.2179 27 6 2.3602 3.3600 -0.0012 28 8 1.4227 2.3957 -0.0006 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5138 -0.8901 32 1 5.9532 1.6851 -0.0009 33 1 8.7009 4.1331 1.4338 34 1 6.9847 4.3196 1.8684 35 1 7.7753 2.7326 2.0246 36 1 9.6800 3.9714 -1.1777 37 1 10.0289 3.2628 0.4172 38 1 11.7439 2.6046 -1.2682 39 1 10.4647 1.8722 -2.2671 40 1 11.2596 1.0517 0.5648 41 1 11.5275 0.1177 -0.9281 42 1 7.0616 -3.3467 -0.2234 43 1 7.4901 0.5381 0.1384 44 1 8.6279 1.3228 1.2619 45 1 2.1849 4.4257 -0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025490043.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:52 Heat of formation + Delta-G solvation = -18.724960 kcal Electronic energy + Delta-G solvation = -28499.419526 eV Core-core repulsion = 24520.379957 eV Total energy + Delta-G solvation = -3979.039569 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.59525 -39.85037 -38.99984 -38.14973 -35.22598 -35.07150 -33.04216 -31.46198 -30.58018 -30.16750 -28.41942 -27.70243 -25.29327 -25.00319 -23.61371 -22.66518 -22.24636 -20.76807 -20.16840 -19.22181 -18.77562 -17.68693 -17.40403 -16.71036 -16.54273 -15.98336 -15.52735 -15.42802 -15.24057 -14.71360 -14.39700 -14.10144 -13.85726 -13.64384 -13.55057 -13.21046 -12.94498 -12.60227 -12.54737 -12.21086 -12.10334 -12.06884 -11.74699 -11.37105 -11.18665 -10.96032 -10.84300 -10.66780 -10.52959 -10.44692 -10.09866 -10.06083 -9.75160 -9.61282 -9.40524 -8.99269 -8.76573 -8.55028 -6.91049 -5.90243 -3.25722 0.96949 1.73945 1.95563 2.56755 3.21237 3.31296 3.38363 3.53353 3.55520 4.37815 4.56160 4.57609 4.66735 4.72918 4.84738 4.94440 5.10627 5.15585 5.26549 5.31042 5.33888 5.47481 5.56715 5.57993 5.64642 5.72817 5.87702 6.02722 6.08559 6.11302 6.20931 6.32071 6.37607 6.44248 6.45889 6.60819 6.63029 6.66051 6.74354 6.78734 7.02733 7.34585 7.70546 8.01142 8.24004 8.37974 8.99190 9.77102 10.15168 11.25726 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011833 B = 0.004688 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.795098 B = 5971.089151 C = 7763.022790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.241 6.241 3 C 0.382 3.618 4 N -0.449 5.449 5 C -0.045 4.045 6 C 0.604 3.396 7 O -0.543 6.543 8 N -0.701 5.701 9 C 0.147 3.853 10 H 0.088 0.912 11 C -0.167 4.167 12 C -0.115 4.115 13 H 0.080 0.920 14 C -0.102 4.102 15 C -0.135 4.135 16 C 0.147 3.853 17 N -0.604 5.604 18 C -0.262 4.262 19 H 0.085 0.915 20 C 0.026 3.974 21 N -0.906 5.906 22 Si 0.875 3.125 23 H -0.282 1.282 24 H -0.304 1.304 25 H -0.272 1.272 26 C 0.131 3.869 27 C -0.002 4.002 28 O -0.227 6.227 29 H 0.119 0.881 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.415 0.585 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.021 0.979 41 H 0.061 0.939 42 H 0.263 0.737 43 H 0.069 0.931 44 H 0.031 0.969 45 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.735 12.820 1.823 17.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.148 6.148 3 C 0.135 3.865 4 N -0.194 5.194 5 C -0.164 4.164 6 C 0.389 3.611 7 O -0.421 6.421 8 N -0.352 5.352 9 C 0.042 3.958 10 H 0.106 0.894 11 C -0.225 4.225 12 C -0.136 4.136 13 H 0.098 0.902 14 C -0.140 4.140 15 C -0.174 4.174 16 C 0.021 3.979 17 N -0.328 5.328 18 C -0.390 4.390 19 H 0.103 0.897 20 C -0.173 4.173 21 N -0.548 5.548 22 Si 0.706 3.294 23 H -0.209 1.209 24 H -0.232 1.232 25 H -0.198 1.198 26 C 0.005 3.995 27 C -0.075 4.075 28 O -0.118 6.118 29 H 0.138 0.862 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.253 0.747 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.039 0.961 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.049 0.951 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -11.313 12.738 1.815 17.133 hybrid contribution -1.401 0.143 0.944 1.695 sum -12.713 12.881 2.759 18.308 Atomic orbital electron populations 1.23302 0.75246 1.05724 1.02818 1.86454 1.23529 1.15654 1.89165 1.23405 0.85586 0.79515 0.97964 1.71248 1.09756 1.15570 1.22813 1.21771 0.95990 0.88462 1.10172 1.16645 0.82040 0.85919 0.76533 1.90797 1.86859 1.12564 1.51910 1.46137 1.05233 1.11598 1.72248 1.21113 0.81052 0.96374 0.97236 0.89380 1.22290 1.01719 1.02053 0.96478 1.21980 0.93920 0.96336 1.01314 0.90173 1.21489 0.94247 0.97491 1.00741 1.22054 0.97525 0.97436 1.00429 1.20944 0.87406 0.93103 0.96457 1.44306 1.02850 1.09383 1.76216 1.18914 1.16901 0.86273 1.16958 0.89718 1.25260 0.98144 0.95814 0.98090 1.69823 1.27020 1.20002 1.37994 0.87054 0.78769 0.76901 0.86702 1.20929 1.23181 1.19750 1.21450 0.92969 0.90233 0.94878 1.24903 0.84921 0.93694 1.03940 1.84374 1.39561 1.15895 1.72007 0.86246 0.91502 0.91429 0.74725 0.91064 0.92478 0.91922 0.92815 0.92008 0.92592 0.91988 0.96087 0.92010 0.92742 0.91328 0.95144 0.74780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.73 101.05 1.08 1.25 16 2 O -0.24 -3.03 10.55 -40.97 -0.43 -3.47 16 3 C 0.38 5.43 8.98 52.22 0.47 5.90 16 4 N -0.45 -7.74 11.10 -11.71 -0.13 -7.87 16 5 C -0.04 -0.69 6.99 -82.98 -0.58 -1.27 16 6 C 0.60 10.13 7.78 -12.55 -0.10 10.04 16 7 O -0.54 -9.50 16.55 5.25 0.09 -9.41 16 8 N -0.70 -12.27 4.99 -54.90 -0.27 -12.54 16 9 C 0.15 2.36 2.41 -67.93 -0.16 2.20 16 10 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 11 C -0.17 -2.49 8.79 37.16 0.33 -2.17 16 12 C -0.11 -2.02 2.33 -90.49 -0.21 -2.23 16 13 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 14 C -0.10 -1.54 4.77 -26.53 -0.13 -1.67 16 15 C -0.14 -2.18 6.11 -26.45 -0.16 -2.34 16 16 C 0.15 2.88 6.50 -3.71 -0.02 2.86 16 17 N -0.60 -14.37 2.77 -172.31 -0.48 -14.85 16 18 C -0.26 -7.39 10.03 -15.06 -0.15 -7.54 16 19 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 20 C 0.03 0.76 5.23 -17.43 -0.09 0.67 16 21 N -0.91 -28.10 13.97 55.49 0.78 -27.32 16 22 Si 0.88 22.74 24.35 -169.99 -4.14 18.60 16 23 H -0.28 -7.05 6.62 56.52 0.37 -6.68 16 24 H -0.30 -8.09 7.11 56.52 0.40 -7.69 16 25 H -0.27 -6.94 6.64 56.52 0.38 -6.57 16 26 C 0.13 2.81 2.99 -3.71 -0.01 2.80 16 27 C 0.00 -0.03 11.93 29.90 0.36 0.33 16 28 O -0.23 -2.64 10.20 -17.75 -0.18 -2.82 16 29 H 0.12 0.53 8.14 -51.92 -0.42 0.11 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.41 8.03 6.69 -40.82 -0.27 7.75 16 33 H 0.07 0.93 6.46 -51.93 -0.34 0.59 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.06 1.01 6.32 -51.93 -0.33 0.68 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.90 6.50 -51.93 -0.34 0.56 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 42 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 43 H 0.07 1.64 3.10 -51.93 -0.16 1.48 16 44 H 0.03 0.66 5.11 -51.93 -0.27 0.40 16 45 H 0.24 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 357.81 15.07 5.39 5.39 Total: -1.00 -34.33 357.81 -5.11 -39.44 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -6.34 Total: 6.03 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 0.62 Total: 8.82 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: -0.11 Total: -62.59 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.53 Total: -15.70 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.14 Total: 18.60 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.33 -5.11 -39.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025490043.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.711 kcal (2) G-P(sol) polarization free energy of solvation -34.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds