Wall clock time and date at job start Tue Mar 31 2020 14:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35345 * 116.99940 * 2 1 4 4 N 1.30554 * 125.44934 * 180.02562 * 3 2 1 5 5 C 1.36329 * 108.38356 * 179.97438 * 4 3 2 6 6 C 1.47372 * 126.41200 * 179.97438 * 5 4 3 7 7 O 1.21621 * 119.99927 * 180.02562 * 6 5 4 8 8 N 1.34779 * 120.00002 * 0.03057 * 6 5 4 9 9 C 1.46491 * 120.00053 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47456 * 324.99495 * 9 8 6 11 11 C 1.52998 * 109.47412 * 84.99771 * 9 8 6 12 12 C 1.53004 * 109.47213 * 205.00046 * 9 8 6 13 13 H 1.09008 * 109.49561 * 299.93488 * 12 9 8 14 14 C 1.53037 * 109.49728 * 179.83975 * 12 9 8 15 15 C 1.53047 * 109.53795 * 178.68240 * 14 12 9 16 16 C 1.52754 * 109.38378 * 61.23712 * 15 14 12 17 17 N 1.46932 * 109.01099 * 305.59147 * 16 15 14 18 18 C 1.36931 * 120.62964 * 233.58902 * 17 16 15 19 19 H 1.08002 * 120.00075 * 152.35895 * 18 17 16 20 20 C 1.38813 * 120.00120 * 332.34384 * 18 17 16 21 21 N 1.31621 * 120.00027 * 342.76454 * 20 18 17 22 22 Si 1.86800 * 120.00058 * 162.47463 * 20 18 17 23 23 H 1.48507 * 109.46810 * 84.99183 * 22 20 18 24 24 H 1.48499 * 109.47476 * 204.98927 * 22 20 18 25 25 H 1.48496 * 109.47213 * 324.99479 * 22 20 18 26 26 C 1.46924 * 118.73758 * 53.30692 * 17 16 15 27 27 C 1.35919 * 107.17653 * 0.22921 * 5 4 3 28 28 O 1.34202 * 125.44698 * 359.97438 * 3 2 1 29 29 H 1.08997 * 109.46725 * 299.99033 * 1 2 3 30 30 H 1.08996 * 109.47703 * 59.99969 * 1 2 3 31 31 H 1.09001 * 109.46919 * 179.97438 * 1 2 3 32 32 H 0.97008 * 119.99513 * 359.97438 * 8 6 5 33 33 H 1.09001 * 109.47376 * 179.97438 * 11 9 8 34 34 H 1.09003 * 109.47349 * 300.00523 * 11 9 8 35 35 H 1.09006 * 109.46644 * 59.99782 * 11 9 8 36 36 H 1.09002 * 109.46301 * 298.69621 * 14 12 9 37 37 H 1.09001 * 109.46592 * 58.66377 * 14 12 9 38 38 H 1.08995 * 109.49608 * 181.31623 * 15 14 12 39 39 H 1.09006 * 109.49576 * 301.37707 * 15 14 12 40 40 H 1.08997 * 109.51067 * 185.71031 * 16 15 14 41 41 H 1.08997 * 109.43181 * 65.42668 * 16 15 14 42 42 H 0.96998 * 119.99813 * 179.72089 * 21 20 18 43 43 H 1.09004 * 109.58803 * 66.43223 * 26 17 16 44 44 H 1.08993 * 109.58971 * 186.86030 * 26 17 16 45 45 H 1.07996 * 126.45499 * 179.77258 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2059 0.0000 4 7 3.3348 1.3978 -0.0005 5 6 3.5700 2.7406 -0.0009 6 6 4.8891 3.3977 -0.0009 7 8 4.9638 4.6116 -0.0008 8 7 6.0127 2.6534 -0.0012 9 6 7.3240 3.3065 -0.0018 10 1 7.2737 4.2219 -0.5915 11 6 7.7250 3.6468 1.4349 12 6 8.3632 2.3636 -0.6117 13 1 8.4147 1.4484 -0.0216 14 6 9.7325 3.0469 -0.6163 15 6 10.7790 2.0922 -1.1959 16 6 10.4064 1.7455 -2.6362 17 7 9.0329 1.2242 -2.6630 18 6 8.7568 0.0148 -3.2427 19 1 7.9144 -0.5682 -2.9009 20 6 9.5596 -0.4618 -4.2700 21 7 10.3589 0.3604 -4.9161 22 14 9.5115 -2.2717 -4.7300 23 1 8.3967 -2.5110 -5.6815 24 1 10.7969 -2.6549 -5.3671 25 1 9.3024 -3.0878 -3.5072 26 6 7.9623 2.0225 -2.0503 27 6 2.3601 3.3600 0.0046 28 8 1.4227 2.3957 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 5.9531 1.6851 -0.0010 33 1 8.7009 4.1324 1.4345 34 1 6.9847 4.3186 1.8694 35 1 7.7753 2.7314 2.0245 36 1 9.6863 3.9488 -1.2266 37 1 10.0092 3.3128 0.4039 38 1 11.7580 2.5709 -1.1773 39 1 10.8087 1.1798 -0.6001 40 1 11.0919 0.9886 -3.0174 41 1 10.4690 2.6420 -3.2528 42 1 10.9229 0.0265 -5.6312 43 1 7.8215 2.9422 -2.6182 44 1 7.0358 1.4484 -2.0451 45 1 2.1848 4.4256 0.0093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025490044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:54 Heat of formation + Delta-G solvation = -53.314626 kcal Electronic energy + Delta-G solvation = -27804.219378 eV Core-core repulsion = 23823.679888 eV Total energy + Delta-G solvation = -3980.539489 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.54472 -40.99062 -39.82500 -39.35544 -36.73167 -36.07871 -34.66100 -32.61159 -32.14677 -31.10553 -29.86717 -28.31055 -27.16538 -25.94118 -24.45312 -23.61941 -23.46062 -22.09988 -21.51019 -20.82873 -19.89836 -18.68845 -18.58694 -18.33018 -17.41889 -17.11800 -16.80431 -16.36670 -16.24549 -15.88477 -15.82573 -15.38718 -15.12293 -14.94518 -14.68468 -14.53355 -14.11913 -14.01741 -13.70251 -13.27197 -13.10375 -13.01578 -12.95382 -12.77241 -12.60652 -12.28179 -12.22154 -12.08555 -11.97121 -11.90778 -11.75020 -11.51283 -11.42199 -11.14891 -11.01274 -10.52548 -10.14765 -9.74808 -8.67336 -7.86870 -5.32117 0.02282 0.86483 0.91162 1.45829 1.47085 1.57035 1.71801 2.11161 2.20613 2.51100 3.27097 3.35239 3.56133 3.75237 3.93542 4.01864 4.06382 4.12866 4.21267 4.24687 4.36727 4.40643 4.46364 4.52314 4.64179 4.65046 4.68638 4.78784 4.88115 4.89301 4.95934 5.06883 5.12413 5.24923 5.29048 5.35151 5.46782 5.52053 5.58096 5.60082 5.67976 5.80126 6.30221 6.39242 6.57489 7.06971 7.15535 7.86900 8.38366 9.19138 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010855 B = 0.003627 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.786314 B = 7717.681556 C = 9810.305516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.258 6.258 3 C 0.381 3.619 4 N -0.487 5.487 5 C -0.079 4.079 6 C 0.604 3.396 7 O -0.562 6.562 8 N -0.699 5.699 9 C 0.153 3.847 10 H 0.075 0.925 11 C -0.152 4.152 12 C -0.095 4.095 13 H 0.074 0.926 14 C -0.096 4.096 15 C -0.131 4.131 16 C 0.172 3.828 17 N -0.609 5.609 18 C -0.264 4.264 19 H 0.063 0.937 20 C -0.050 4.050 21 N -0.935 5.935 22 Si 0.966 3.034 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.271 1.271 26 C 0.156 3.844 27 C 0.030 3.970 28 O -0.214 6.214 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.144 0.856 32 H 0.411 0.589 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.052 0.948 41 H -0.009 1.009 42 H 0.250 0.750 43 H 0.000 1.000 44 H 0.044 0.956 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.840 4.673 15.157 23.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.166 6.166 3 C 0.134 3.866 4 N -0.233 5.233 5 C -0.197 4.197 6 C 0.390 3.610 7 O -0.442 6.442 8 N -0.348 5.348 9 C 0.049 3.951 10 H 0.093 0.907 11 C -0.210 4.210 12 C -0.116 4.116 13 H 0.092 0.908 14 C -0.134 4.134 15 C -0.170 4.170 16 C 0.047 3.953 17 N -0.332 5.332 18 C -0.394 4.394 19 H 0.081 0.919 20 C -0.245 4.245 21 N -0.581 5.581 22 Si 0.793 3.207 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.196 1.196 26 C 0.030 3.970 27 C -0.043 4.043 28 O -0.105 6.105 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.162 0.838 32 H 0.247 0.753 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.009 0.991 42 H 0.059 0.941 43 H 0.018 0.982 44 H 0.063 0.937 45 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -17.240 4.731 15.016 23.347 hybrid contribution -0.592 -0.921 -0.999 1.481 sum -17.832 3.811 14.018 23.000 Atomic orbital electron populations 1.23702 0.72576 1.07720 1.03955 1.86428 1.26223 1.14999 1.88978 1.23429 0.85468 0.80358 0.97310 1.71033 1.11287 1.16347 1.24669 1.21615 0.96153 0.88633 1.13252 1.16807 0.82551 0.85732 0.75915 1.90790 1.87197 1.13428 1.52822 1.45964 1.05360 1.11058 1.72446 1.21024 0.80533 0.95582 0.97975 0.90708 1.22136 1.02473 1.02147 0.94290 1.21752 0.95110 0.98333 0.96369 0.90793 1.21443 0.92897 0.97414 1.01625 1.21939 0.98658 0.99183 0.97171 1.20567 0.86082 0.95685 0.92982 1.44291 1.03020 1.19821 1.66061 1.19487 1.13323 0.94973 1.11619 0.91886 1.25770 1.00733 1.01961 0.96043 1.70202 1.29675 1.34597 1.23633 0.85326 0.76680 0.80662 0.77983 1.21131 1.21651 1.19586 1.20939 0.90973 0.93052 0.92036 1.25594 0.83873 0.94785 1.00051 1.84421 1.39080 1.15460 1.71544 0.90156 0.90618 0.83811 0.75322 0.89531 0.92752 0.91657 0.92742 0.89150 0.90914 0.92846 0.92933 0.99078 0.94118 0.98208 0.93696 0.71475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 10.73 113.37 1.22 1.33 16 2 O -0.26 -4.99 10.55 -64.13 -0.68 -5.67 16 3 C 0.38 8.79 8.98 130.43 1.17 9.97 16 4 N -0.49 -13.82 11.10 -419.39 -4.65 -18.48 16 5 C -0.08 -2.08 6.99 40.31 0.28 -1.80 16 6 C 0.60 18.12 7.78 86.65 0.67 18.79 16 7 O -0.56 -18.65 16.55 -4.10 -0.07 -18.72 16 8 N -0.70 -20.68 4.47 -445.85 -1.99 -22.67 16 9 C 0.15 4.43 2.16 44.99 0.10 4.53 16 10 H 0.07 2.40 7.58 -2.39 -0.02 2.38 16 11 C -0.15 -3.53 9.14 71.98 0.66 -2.87 16 12 C -0.10 -3.16 1.97 -10.72 -0.02 -3.18 16 13 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 14 C -0.10 -2.98 4.86 30.62 0.15 -2.84 16 15 C -0.13 -4.84 6.06 30.53 0.19 -4.65 16 16 C 0.17 8.54 5.28 86.22 0.46 9.00 16 17 N -0.61 -31.71 3.00 -699.94 -2.10 -33.81 16 18 C -0.26 -15.06 9.59 84.03 0.81 -14.25 16 19 H 0.06 3.54 7.89 -2.91 -0.02 3.51 16 20 C -0.05 -2.86 4.91 84.86 0.42 -2.45 16 21 N -0.93 -56.81 11.18 21.65 0.24 -56.56 16 22 Si 0.97 46.02 29.59 68.60 2.03 48.05 16 23 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 25 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 26 C 0.16 6.78 5.56 86.36 0.48 7.26 16 27 C 0.03 0.56 11.93 67.28 0.80 1.36 16 28 O -0.21 -3.97 10.20 18.89 0.19 -3.77 16 29 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.14 0.42 8.14 -2.39 -0.02 0.41 16 32 H 0.41 12.26 8.14 -92.70 -0.75 11.51 16 33 H 0.09 1.73 6.40 -2.39 -0.02 1.71 16 34 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.09 2.18 6.36 -2.39 -0.02 2.17 16 38 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 40 H 0.05 2.94 6.03 -2.39 -0.01 2.93 16 41 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 42 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 43 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 44 H 0.04 1.98 7.44 -2.39 -0.02 1.96 16 45 H 0.27 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -74.42 369.66 0.60 -73.83 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.25 Total: 17.59 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 7.37 Total: 20.21 kcal Atomic # 7 Polarization: -123.01 SS G_CDS: -8.51 Total: -131.52 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.55 Total: -28.16 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -74.42 0.60 -73.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025490044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.512 kcal (2) G-P(sol) polarization free energy of solvation -74.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds