Wall clock time and date at job start Tue Mar 31 2020 14:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35351 * 116.99770 * 180.02562 * 3 2 1 5 5 N 1.30549 * 125.44419 * 179.97438 * 4 3 2 6 6 C 1.36332 * 108.38214 * 179.97438 * 5 4 3 7 7 C 1.47374 * 126.41053 * 179.97438 * 6 5 4 8 8 O 1.21627 * 119.99447 * 180.02562 * 7 6 5 9 9 N 1.34775 * 120.00118 * 0.02562 * 7 6 5 10 10 C 1.46502 * 119.99761 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47222 * 275.00023 * 10 9 7 12 12 C 1.53001 * 109.47040 * 180.02562 * 11 10 9 13 13 C 1.52994 * 109.47407 * 59.99842 * 12 11 10 14 14 N 1.46497 * 109.47355 * 179.97438 * 13 12 11 15 15 C 1.36934 * 120.00015 * 275.00211 * 14 13 12 16 16 H 1.08002 * 120.00006 * 359.97438 * 15 14 13 17 17 C 1.38818 * 120.00202 * 179.97438 * 15 14 13 18 18 N 1.31623 * 119.99497 * 359.97438 * 17 15 14 19 19 Si 1.86790 * 120.00323 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47140 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47286 * 119.99997 * 19 17 15 22 22 H 1.48503 * 109.47397 * 239.99777 * 19 17 15 23 23 C 1.52999 * 109.47149 * 300.00090 * 13 12 11 24 24 C 1.53000 * 109.46778 * 155.00131 * 10 9 7 25 25 C 1.35909 * 107.17514 * 359.97438 * 6 5 4 26 26 O 1.34199 * 125.44932 * 359.68691 * 4 3 2 27 27 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 28 28 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 29 29 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 31 31 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 32 32 H 0.96997 * 120.00033 * 0.02562 * 9 7 6 33 33 H 1.09001 * 109.47116 * 35.00336 * 10 9 7 34 34 H 1.09001 * 109.47330 * 300.00181 * 11 10 9 35 35 H 1.09006 * 109.47227 * 60.00031 * 11 10 9 36 36 H 1.08995 * 109.47027 * 299.99631 * 12 11 10 37 37 H 1.09002 * 109.46826 * 180.02562 * 12 11 10 38 38 H 1.09009 * 109.47076 * 59.99989 * 13 12 11 39 39 H 0.97002 * 119.99854 * 95.00124 * 14 13 12 40 40 H 0.97003 * 119.99669 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.47330 * 299.99849 * 23 13 12 42 42 H 1.08996 * 109.47046 * 179.97438 * 23 13 12 43 43 H 1.09002 * 109.47270 * 299.99741 * 24 10 9 44 44 H 1.08995 * 109.47448 * 59.99892 * 24 10 9 45 45 H 1.08000 * 126.45936 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3481 1.5247 -0.0005 5 7 3.9592 2.6783 -0.0011 6 6 5.3037 2.4526 -0.0009 7 6 6.3628 3.4774 -0.0020 8 8 7.5323 3.1432 -0.0022 9 7 6.0355 4.7848 -0.0027 10 6 7.0883 5.8035 -0.0031 11 6 7.5422 6.0685 1.4338 12 6 8.6413 7.1328 1.4333 13 6 8.0984 8.4265 0.8232 14 7 9.1506 9.4458 0.8233 15 6 9.3598 10.2137 1.9376 16 1 8.7488 10.0683 2.8162 17 6 10.3572 11.1792 1.9380 18 7 11.1022 11.3561 0.8673 19 14 10.6431 12.2263 3.4581 20 1 9.6805 11.8330 4.5183 21 1 12.0301 12.0208 3.9472 22 1 10.4455 13.6582 3.1174 23 6 7.6445 8.1615 -0.6137 24 6 6.5458 7.0973 -0.6134 25 6 5.4845 1.1056 0.0003 26 8 4.2630 0.5430 0.0049 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 5.1028 5.0512 -0.0021 33 1 7.9348 5.4508 -0.5923 34 1 6.6957 6.4211 2.0230 35 1 7.9287 5.1467 1.8687 36 1 9.4879 6.7806 0.8441 37 1 8.9650 7.3213 2.4570 38 1 7.2517 8.7788 1.4126 39 1 9.6991 9.5767 0.0341 40 1 11.7989 12.0310 0.8674 41 1 8.4911 7.8092 -1.2030 42 1 7.2573 9.0830 -1.0482 43 1 6.2225 6.9085 -1.6371 44 1 5.6993 7.4500 -0.0243 45 1 6.4308 0.5850 0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026522277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:46 Heat of formation + Delta-G solvation = -48.712757 kcal Electronic energy + Delta-G solvation = -26590.841370 eV Core-core repulsion = 22610.501433 eV Total energy + Delta-G solvation = -3980.339937 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.83160 -39.95734 -39.38511 -37.90190 -35.32657 -34.82490 -32.96358 -32.50079 -30.65619 -30.35425 -29.86102 -27.46234 -24.83238 -24.10555 -23.38826 -22.67753 -22.26424 -21.12199 -20.52323 -19.71611 -19.09868 -18.00179 -17.57138 -16.97717 -16.71222 -16.18843 -16.10830 -15.43710 -15.12234 -14.86340 -14.34465 -13.93206 -13.77967 -13.67478 -13.51989 -13.50169 -13.35870 -13.00117 -12.51139 -12.38277 -12.00991 -11.92201 -11.75362 -11.41894 -11.31098 -11.16796 -10.98844 -10.79397 -10.72570 -10.64769 -10.24229 -10.09647 -10.04505 -9.70608 -9.55558 -9.13550 -8.90265 -8.80471 -6.89115 -5.71400 -2.99453 0.77021 1.46386 1.70336 2.28144 3.00724 3.13160 3.46730 3.52429 3.54574 4.11284 4.16955 4.18474 4.49578 4.50890 4.63500 4.71198 4.95293 5.03769 5.08970 5.10222 5.11737 5.34340 5.37528 5.42965 5.57021 5.66962 5.73766 5.79372 5.90007 5.93926 6.07986 6.21781 6.30122 6.31117 6.36174 6.53314 6.62076 6.68842 6.77971 7.04448 7.09047 7.20862 7.49641 7.76077 8.07959 8.47655 9.58608 10.17739 10.52305 11.51499 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.030426 B = 0.001948 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.051594 B =14370.562043 C =14598.742294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.245 6.245 4 C 0.383 3.617 5 N -0.455 5.455 6 C -0.045 4.045 7 C 0.601 3.399 8 O -0.532 6.532 9 N -0.704 5.704 10 C 0.144 3.856 11 C -0.124 4.124 12 C -0.131 4.131 13 C 0.176 3.824 14 N -0.725 5.725 15 C -0.235 4.235 16 H 0.070 0.930 17 C -0.016 4.016 18 N -0.933 5.933 19 Si 0.905 3.095 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.120 4.120 24 C -0.119 4.119 25 C 0.002 3.998 26 O -0.226 6.226 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.408 0.592 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.046 0.954 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.729 -26.110 -4.216 33.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.153 6.153 4 C 0.137 3.863 5 N -0.201 5.201 6 C -0.164 4.164 7 C 0.386 3.614 8 O -0.409 6.409 9 N -0.353 5.353 10 C 0.041 3.959 11 C -0.163 4.163 12 C -0.172 4.172 13 C 0.066 3.934 14 N -0.366 5.366 15 C -0.366 4.366 16 H 0.088 0.912 17 C -0.212 4.212 18 N -0.582 5.582 19 Si 0.736 3.264 20 H -0.206 1.206 21 H -0.220 1.220 22 H -0.220 1.220 23 C -0.159 4.159 24 C -0.158 4.158 25 C -0.071 4.071 26 O -0.117 6.117 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.243 0.757 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.217 0.783 40 H 0.063 0.937 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -20.449 -25.570 -4.051 32.991 hybrid contribution 0.254 -0.179 0.641 0.713 sum -20.195 -25.749 -3.409 32.901 Atomic orbital electron populations 1.21818 0.91136 1.03717 1.04297 1.23074 0.96933 0.79277 1.03090 1.86393 1.08901 1.30894 1.89151 1.23292 0.83495 0.81579 0.97939 1.71111 1.03897 1.21525 1.23609 1.21777 0.90225 0.94134 1.10250 1.16645 0.86072 0.81905 0.76805 1.90860 1.17850 1.81394 1.50837 1.45992 1.11305 1.04968 1.73074 1.21206 0.89986 0.86771 0.97938 1.21911 0.99619 0.99617 0.95203 1.22217 0.97033 0.95751 1.02237 1.20250 0.91707 0.88533 0.92867 1.42435 1.38619 1.39492 1.16022 1.19302 1.13211 1.11299 0.92808 0.91163 1.24736 0.98912 1.00030 0.97475 1.69677 1.23876 1.36820 1.27845 0.86140 0.77537 0.80232 0.82444 1.20602 1.21954 1.21963 1.21742 0.97475 0.97625 0.99028 1.21746 0.99370 0.94139 1.00517 1.24996 0.85827 0.92915 1.03329 1.84393 1.16267 1.39187 1.71899 0.90893 0.90902 0.89391 0.90755 0.90748 0.75697 0.89181 0.92170 0.92297 0.92445 0.91773 0.93556 0.78315 0.93651 0.91934 0.91311 0.91751 0.91408 0.74701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.40 10.28 37.16 0.38 -0.02 16 2 C 0.05 0.22 6.38 37.16 0.24 0.46 16 3 O -0.25 -2.05 10.19 -40.97 -0.42 -2.46 16 4 C 0.38 3.83 8.98 52.22 0.47 4.30 16 5 N -0.46 -5.38 11.10 -11.72 -0.13 -5.51 16 6 C -0.04 -0.52 6.99 -82.98 -0.58 -1.10 16 7 C 0.60 8.13 7.78 -12.54 -0.10 8.04 16 8 O -0.53 -8.58 16.55 5.25 0.09 -8.50 16 9 N -0.70 -8.85 5.07 -54.89 -0.28 -9.13 16 10 C 0.14 2.01 2.46 -67.93 -0.17 1.84 16 11 C -0.12 -1.91 5.49 -26.73 -0.15 -2.05 16 12 C -0.13 -2.43 5.50 -26.73 -0.15 -2.58 16 13 C 0.18 3.50 2.77 -67.94 -0.19 3.31 16 14 N -0.73 -18.31 5.12 -53.43 -0.27 -18.58 16 15 C -0.23 -6.58 9.93 -15.06 -0.15 -6.73 16 16 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 17 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 18 N -0.93 -28.53 13.06 55.49 0.72 -27.81 16 19 Si 0.90 22.70 29.55 -169.99 -5.02 17.68 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 C -0.12 -1.96 5.39 -26.75 -0.14 -2.10 16 24 C -0.12 -1.56 5.39 -26.75 -0.14 -1.70 16 25 C 0.00 0.01 11.93 29.90 0.36 0.37 16 26 O -0.23 -1.95 10.20 -17.74 -0.18 -2.13 16 27 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.09 0.07 8.14 -51.93 -0.42 -0.36 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.41 4.55 8.33 -40.82 -0.34 4.21 16 33 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.05 0.94 8.08 -51.92 -0.42 0.52 16 39 H 0.38 10.29 7.80 -40.82 -0.32 9.97 16 40 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.24 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 378.76 15.07 5.71 5.71 Total: -1.00 -33.69 378.76 -7.14 -40.83 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -6.94 Total: 8.44 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -0.42 Total: 1.47 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: 0.04 Total: -61.03 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.51 Total: -13.09 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.69 -7.14 -40.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026522277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.888 kcal (2) G-P(sol) polarization free energy of solvation -33.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds