Wall clock time and date at job start Tue Mar 31 2020 14:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.46780 * 2 1 4 4 C 1.35737 * 116.99774 * 180.02562 * 3 2 1 5 5 C 1.41847 * 126.78794 * 180.02562 * 4 3 2 6 6 C 1.36665 * 103.81351 * 179.97438 * 5 4 3 7 7 C 1.47545 * 126.87740 * 179.97438 * 6 5 4 8 8 O 1.21576 * 120.00222 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99674 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99771 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46840 * 204.99940 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47317 * 59.99960 * 12 11 10 14 14 N 1.46496 * 109.47487 * 179.97438 * 13 12 11 15 15 C 1.36933 * 120.00258 * 274.99944 * 14 13 12 16 16 H 1.07997 * 120.00195 * 0.02562 * 15 14 13 17 17 C 1.38814 * 120.00104 * 179.97438 * 15 14 13 18 18 N 1.31617 * 120.00032 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99990 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.46973 * 89.99736 * 19 17 15 21 21 H 1.48492 * 109.47032 * 209.99634 * 19 17 15 22 22 H 1.48491 * 109.47161 * 330.00041 * 19 17 15 23 23 C 1.53005 * 109.47159 * 300.00546 * 13 12 11 24 24 C 1.52997 * 109.47452 * 59.99536 * 23 13 12 25 25 O 1.34654 * 106.23698 * 0.22895 * 6 5 4 26 26 N 1.20880 * 111.63784 * 359.58793 * 25 6 5 27 27 H 1.09001 * 109.47307 * 299.99807 * 1 2 3 28 28 H 1.08998 * 109.47556 * 60.00096 * 1 2 3 29 29 H 1.08995 * 109.46981 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46856 * 240.00080 * 2 1 3 31 31 H 1.08997 * 109.47033 * 119.99882 * 2 1 3 32 32 H 1.08006 * 128.09168 * 359.97438 * 5 4 3 33 33 H 0.97006 * 119.99662 * 0.02562 * 9 7 6 34 34 H 1.08992 * 109.47397 * 325.00275 * 10 9 7 35 35 H 1.09002 * 109.47398 * 300.00326 * 11 10 9 36 36 H 1.09001 * 109.47194 * 60.00507 * 11 10 9 37 37 H 1.08996 * 109.47853 * 180.02562 * 12 11 10 38 38 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 39 39 H 1.09002 * 109.46716 * 60.00091 * 13 12 11 40 40 H 0.97007 * 119.99693 * 95.00333 * 14 13 12 41 41 H 0.97001 * 120.00297 * 180.02562 * 18 17 15 42 42 H 1.09002 * 109.46935 * 299.99411 * 23 13 12 43 43 H 1.09001 * 109.46812 * 179.97438 * 23 13 12 44 44 H 1.08993 * 109.47194 * 179.97438 * 24 23 13 45 45 H 1.09002 * 109.46695 * 59.99734 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5252 -0.0005 5 6 4.0452 2.7627 -0.0001 6 6 5.3625 2.3987 -0.0004 7 6 6.5303 3.3006 -0.0007 8 8 6.3679 4.5054 -0.0003 9 7 7.7770 2.7886 -0.0014 10 6 8.9365 3.6840 -0.0012 11 6 10.1390 2.9614 -0.6117 12 6 11.3501 3.8963 -0.6108 13 6 11.6772 4.3059 0.8265 14 7 12.8372 5.2006 0.8274 15 6 14.1036 4.6798 0.8270 16 1 14.2473 3.6094 0.8256 17 6 15.2028 5.5275 0.8273 18 7 16.4201 5.0269 0.8264 19 14 14.9544 7.3789 0.8291 20 1 14.8891 7.8683 2.2297 21 1 16.0900 8.0314 0.1293 22 1 13.6866 7.7089 0.1299 23 6 10.4746 5.0285 1.4371 24 6 9.2635 4.0936 1.4363 25 8 5.3811 1.0523 -0.0061 26 7 4.2638 0.5911 -0.0010 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.6293 3.7594 0.0003 33 1 7.9065 1.8272 -0.0022 34 1 8.7094 4.5727 -0.5898 35 1 10.3661 2.0726 -0.0230 36 1 9.9059 2.6692 -1.6356 37 1 12.2067 3.3817 -1.0462 38 1 11.1233 4.7853 -1.1993 39 1 11.9041 3.4169 1.4150 40 1 12.7082 6.1621 0.8284 41 1 17.1882 5.6193 0.8270 42 1 10.2478 5.9175 0.8487 43 1 10.7076 5.3199 2.4613 44 1 8.4070 4.6082 1.8717 45 1 9.4905 3.2046 2.0247 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026529279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:45 Heat of formation + Delta-G solvation = -5.913212 kcal Electronic energy + Delta-G solvation = -26597.440850 eV Core-core repulsion = 22618.956841 eV Total energy + Delta-G solvation = -3978.484010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.39522 -40.23085 -39.46632 -38.16884 -35.19915 -33.94636 -33.30431 -32.30146 -31.64590 -30.92770 -30.53616 -27.95628 -25.09504 -23.92883 -23.71502 -22.86417 -22.45643 -21.25278 -20.76812 -20.03731 -19.05338 -18.38909 -17.52809 -17.37056 -16.62162 -16.44447 -16.29019 -15.28324 -15.14343 -14.96216 -14.55110 -14.24214 -14.00422 -13.92714 -13.60525 -13.41668 -13.22655 -12.95334 -12.71170 -12.45377 -12.37528 -12.00908 -11.89909 -11.72705 -11.67606 -11.01776 -10.96812 -10.87293 -10.83621 -10.50105 -10.40154 -10.28387 -10.14190 -9.79668 -9.76554 -9.57050 -9.24206 -8.89477 -7.26050 -5.76503 -3.11803 0.36031 1.66813 2.12415 2.19479 2.65496 3.00615 3.38909 3.42310 3.46821 3.64169 4.24885 4.35577 4.42426 4.47678 4.60177 4.66926 4.75150 4.80058 4.91281 5.05680 5.07555 5.20534 5.26554 5.42557 5.45277 5.46218 5.50303 5.57397 5.68619 5.74033 5.89467 6.01923 6.13795 6.18964 6.25197 6.38914 6.43814 6.48457 6.57276 6.85616 6.98329 7.06882 7.59395 7.72173 8.00164 8.42875 9.21803 9.94653 10.14563 11.41835 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.047372 B = 0.001917 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.918491 B =14605.374147 C =14928.232915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.281 6.281 4 C 0.207 3.793 5 C -0.155 4.155 6 C -0.056 4.056 7 C 0.604 3.396 8 O -0.507 6.507 9 N -0.706 5.706 10 C 0.143 3.857 11 C -0.123 4.123 12 C -0.132 4.132 13 C 0.181 3.819 14 N -0.749 5.749 15 C -0.243 4.243 16 H 0.090 0.910 17 C 0.004 3.996 18 N -0.935 5.935 19 Si 0.884 3.116 20 H -0.285 1.285 21 H -0.292 1.292 22 H -0.277 1.277 23 C -0.125 4.125 24 C -0.123 4.123 25 O 0.117 5.883 26 N -0.390 5.390 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.190 0.810 33 H 0.407 0.593 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.361 0.639 41 H 0.259 0.741 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.354 -9.943 -2.193 32.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.188 6.188 4 C 0.010 3.990 5 C -0.178 4.178 6 C -0.122 4.122 7 C 0.386 3.614 8 O -0.382 6.382 9 N -0.356 5.356 10 C 0.041 3.959 11 C -0.162 4.162 12 C -0.173 4.173 13 C 0.071 3.929 14 N -0.391 5.391 15 C -0.373 4.373 16 H 0.108 0.892 17 C -0.192 4.192 18 N -0.582 5.582 19 Si 0.714 3.286 20 H -0.211 1.211 21 H -0.218 1.218 22 H -0.203 1.203 23 C -0.164 4.164 24 C -0.162 4.162 25 O 0.051 5.949 26 N -0.114 5.114 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.208 0.792 33 H 0.242 0.758 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.193 0.807 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -30.530 -10.335 -2.182 32.306 hybrid contribution -0.238 1.369 -0.056 1.391 sum -30.769 -8.965 -2.238 32.126 Atomic orbital electron populations 1.21804 0.91994 1.03345 1.03778 1.22868 0.96050 0.80350 1.02547 1.86232 1.12855 1.30463 1.89200 1.21846 0.85943 0.90431 1.00750 1.22201 0.90116 0.99346 1.06100 1.24151 0.96680 0.84332 1.07039 1.16476 0.81138 0.86079 0.77706 1.90906 1.84789 1.12784 1.49678 1.46096 1.05042 1.11361 1.73057 1.21293 0.83541 0.93271 0.97843 1.21828 0.94407 0.99433 1.00491 1.22195 0.95822 0.98493 1.00782 1.20228 0.86091 0.93519 0.93037 1.42796 1.02227 1.03842 1.90242 1.19078 0.81312 0.93981 1.42887 0.89209 1.24670 0.95083 0.97336 1.02077 1.69700 0.97038 1.33881 1.57630 0.86557 0.76968 0.87287 0.77769 1.21136 1.21830 1.20270 1.21806 0.94385 0.98397 1.01771 1.21856 0.98531 1.00228 0.95556 1.84950 1.22907 1.18565 1.68478 1.74012 0.90419 1.22062 1.24890 0.91263 0.91266 0.89832 0.91445 0.91436 0.79227 0.75795 0.88898 0.91309 0.91782 0.90900 0.92425 0.92592 0.80661 0.93103 0.92069 0.91355 0.91734 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 10.28 37.16 0.38 -0.25 16 2 C 0.06 0.37 6.38 37.16 0.24 0.61 16 3 O -0.28 -2.57 10.21 -18.92 -0.19 -2.76 16 4 C 0.21 2.07 8.00 -16.72 -0.13 1.94 16 5 C -0.15 -1.47 10.97 -38.77 -0.43 -1.89 16 6 C -0.06 -0.54 7.29 -36.36 -0.26 -0.81 16 7 C 0.60 6.61 7.78 -12.46 -0.10 6.51 16 8 O -0.51 -7.12 16.57 5.30 0.09 -7.03 16 9 N -0.71 -6.69 5.07 -54.85 -0.28 -6.96 16 10 C 0.14 1.63 2.46 -67.93 -0.17 1.46 16 11 C -0.12 -1.42 5.39 -26.73 -0.14 -1.56 16 12 C -0.13 -2.07 5.50 -26.73 -0.15 -2.22 16 13 C 0.18 3.22 2.77 -67.93 -0.19 3.03 16 14 N -0.75 -17.12 4.93 -53.43 -0.26 -17.39 16 15 C -0.24 -6.67 10.41 -15.06 -0.16 -6.83 16 16 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 17 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 18 N -0.93 -29.07 13.97 55.49 0.78 -28.29 16 19 Si 0.88 21.97 27.74 -169.99 -4.71 17.25 16 20 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 23 C -0.12 -1.85 5.39 -26.73 -0.14 -2.00 16 24 C -0.12 -1.50 5.49 -26.73 -0.15 -1.65 16 25 O 0.12 1.13 11.03 15.52 0.17 1.30 16 26 N -0.39 -4.04 11.50 30.47 0.35 -3.69 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.19 1.51 8.06 -52.48 -0.42 1.09 16 33 H 0.41 2.90 8.43 -40.82 -0.34 2.56 16 34 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 40 H 0.36 8.20 5.66 -40.82 -0.23 7.97 16 41 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 375.37 15.07 5.66 5.66 Total: -1.00 -32.63 375.37 -6.80 -39.42 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -6.90 Total: 6.13 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -1.49 Total: -3.63 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: 0.58 Total: -56.34 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.07 Total: -8.50 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.71 Total: 17.25 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.63 -6.80 -39.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026529279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.510 kcal (2) G-P(sol) polarization free energy of solvation -32.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds