Wall clock time and date at job start Tue Mar 31 2020 14:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.46780 * 2 1 4 4 C 1.35737 * 116.99774 * 180.02562 * 3 2 1 5 5 C 1.41847 * 126.78794 * 180.02562 * 4 3 2 6 6 C 1.36665 * 103.81351 * 179.97438 * 5 4 3 7 7 C 1.47545 * 126.87740 * 179.97438 * 6 5 4 8 8 O 1.21576 * 120.00222 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99674 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99771 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46840 * 204.99940 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47317 * 59.99960 * 12 11 10 14 14 N 1.46496 * 109.47487 * 179.97438 * 13 12 11 15 15 C 1.36933 * 120.00258 * 274.99944 * 14 13 12 16 16 H 1.07997 * 120.00195 * 0.02562 * 15 14 13 17 17 C 1.38814 * 120.00104 * 179.97438 * 15 14 13 18 18 N 1.31617 * 120.00032 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99990 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.46973 * 89.99736 * 19 17 15 21 21 H 1.48492 * 109.47032 * 209.99634 * 19 17 15 22 22 H 1.48491 * 109.47161 * 330.00041 * 19 17 15 23 23 C 1.53005 * 109.47159 * 300.00546 * 13 12 11 24 24 C 1.52997 * 109.47452 * 59.99536 * 23 13 12 25 25 O 1.34654 * 106.23698 * 0.22895 * 6 5 4 26 26 N 1.20880 * 111.63784 * 359.58793 * 25 6 5 27 27 H 1.09001 * 109.47307 * 299.99807 * 1 2 3 28 28 H 1.08998 * 109.47556 * 60.00096 * 1 2 3 29 29 H 1.08995 * 109.46981 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46856 * 240.00080 * 2 1 3 31 31 H 1.08997 * 109.47033 * 119.99882 * 2 1 3 32 32 H 1.08006 * 128.09168 * 359.97438 * 5 4 3 33 33 H 0.97006 * 119.99662 * 0.02562 * 9 7 6 34 34 H 1.08992 * 109.47397 * 325.00275 * 10 9 7 35 35 H 1.09002 * 109.47398 * 300.00326 * 11 10 9 36 36 H 1.09001 * 109.47194 * 60.00507 * 11 10 9 37 37 H 1.08996 * 109.47853 * 180.02562 * 12 11 10 38 38 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 39 39 H 1.09002 * 109.46716 * 60.00091 * 13 12 11 40 40 H 0.97007 * 119.99693 * 95.00333 * 14 13 12 41 41 H 0.97001 * 120.00297 * 180.02562 * 18 17 15 42 42 H 1.09002 * 109.46935 * 299.99411 * 23 13 12 43 43 H 1.09001 * 109.46812 * 179.97438 * 23 13 12 44 44 H 1.08993 * 109.47194 * 179.97438 * 24 23 13 45 45 H 1.09002 * 109.46695 * 59.99734 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5252 -0.0005 5 6 4.0452 2.7627 -0.0001 6 6 5.3625 2.3987 -0.0004 7 6 6.5303 3.3006 -0.0007 8 8 6.3679 4.5054 -0.0003 9 7 7.7770 2.7886 -0.0014 10 6 8.9365 3.6840 -0.0012 11 6 10.1390 2.9614 -0.6117 12 6 11.3501 3.8963 -0.6108 13 6 11.6772 4.3059 0.8265 14 7 12.8372 5.2006 0.8274 15 6 14.1036 4.6798 0.8270 16 1 14.2473 3.6094 0.8256 17 6 15.2028 5.5275 0.8273 18 7 16.4201 5.0269 0.8264 19 14 14.9544 7.3789 0.8291 20 1 14.8891 7.8683 2.2297 21 1 16.0900 8.0314 0.1293 22 1 13.6866 7.7089 0.1299 23 6 10.4746 5.0285 1.4371 24 6 9.2635 4.0936 1.4363 25 8 5.3811 1.0523 -0.0061 26 7 4.2638 0.5911 -0.0010 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.6293 3.7594 0.0003 33 1 7.9065 1.8272 -0.0022 34 1 8.7094 4.5727 -0.5898 35 1 10.3661 2.0726 -0.0230 36 1 9.9059 2.6692 -1.6356 37 1 12.2067 3.3817 -1.0462 38 1 11.1233 4.7853 -1.1993 39 1 11.9041 3.4169 1.4150 40 1 12.7082 6.1621 0.8284 41 1 17.1882 5.6193 0.8270 42 1 10.2478 5.9175 0.8487 43 1 10.7076 5.3199 2.4613 44 1 8.4070 4.6082 1.8717 45 1 9.4905 3.2046 2.0247 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026529279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:45 Heat of formation + Delta-G solvation = -29.980298 kcal Electronic energy + Delta-G solvation = -26598.484477 eV Core-core repulsion = 22618.956841 eV Total energy + Delta-G solvation = -3979.527637 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.15015 -41.16947 -40.10972 -39.35873 -36.55775 -34.84060 -34.57068 -33.34821 -32.60851 -32.13678 -31.66932 -29.34796 -26.06257 -25.02523 -24.56044 -23.94291 -23.60772 -22.31439 -21.70245 -21.23095 -20.07302 -19.44408 -19.13719 -18.05900 -17.54450 -17.13375 -17.02204 -16.77293 -16.29525 -15.97190 -15.72927 -15.35792 -15.03860 -14.92854 -14.73909 -14.47320 -14.32804 -14.09641 -13.78641 -13.55528 -13.45057 -13.06744 -12.98951 -12.88039 -12.47655 -12.36709 -12.14729 -12.13234 -12.00375 -11.94530 -11.77516 -11.67184 -11.46260 -11.09588 -11.02611 -10.87808 -10.46950 -10.16521 -9.25367 -7.98528 -5.30611 -0.41189 0.91978 1.38199 1.40820 1.42951 1.48556 1.50383 1.81934 2.21897 2.51790 2.92809 3.33018 3.55248 3.60530 3.70995 3.82526 3.90210 3.91014 3.91766 4.07635 4.23082 4.26068 4.35181 4.40183 4.53374 4.55532 4.63197 4.66163 4.78156 4.83496 4.84830 4.97478 5.10688 5.14980 5.16712 5.26838 5.31909 5.35415 5.55008 5.65431 5.83100 5.85024 6.24619 6.26389 6.84786 6.92847 7.12961 7.90986 8.08653 9.23062 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.047372 B = 0.001917 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.918491 B =14605.374147 C =14928.232915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.050 3.950 3 O -0.290 6.290 4 C 0.201 3.799 5 C -0.154 4.154 6 C -0.056 4.056 7 C 0.610 3.390 8 O -0.538 6.538 9 N -0.692 5.692 10 C 0.151 3.849 11 C -0.111 4.111 12 C -0.125 4.125 13 C 0.172 3.828 14 N -0.754 5.754 15 C -0.223 4.223 16 H 0.059 0.941 17 C -0.066 4.066 18 N -0.986 5.986 19 Si 0.952 3.048 20 H -0.281 1.281 21 H -0.299 1.299 22 H -0.252 1.252 23 C -0.116 4.116 24 C -0.115 4.115 25 O 0.123 5.877 26 N -0.399 5.399 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.202 0.798 33 H 0.421 0.579 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.047 0.953 38 H 0.055 0.945 39 H 0.047 0.953 40 H 0.363 0.637 41 H 0.256 0.744 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.105 -9.966 -2.344 34.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.025 4.025 3 O -0.197 6.197 4 C 0.005 3.995 5 C -0.176 4.176 6 C -0.122 4.122 7 C 0.394 3.606 8 O -0.416 6.416 9 N -0.342 5.342 10 C 0.048 3.952 11 C -0.150 4.150 12 C -0.166 4.166 13 C 0.065 3.935 14 N -0.397 5.397 15 C -0.354 4.354 16 H 0.077 0.923 17 C -0.257 4.257 18 N -0.637 5.637 19 Si 0.780 3.220 20 H -0.207 1.207 21 H -0.226 1.226 22 H -0.177 1.177 23 C -0.155 4.155 24 C -0.154 4.154 25 O 0.056 5.944 26 N -0.123 5.123 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.122 0.878 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.220 0.780 33 H 0.259 0.741 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.196 0.804 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -33.361 -10.406 -2.337 35.024 hybrid contribution 0.548 1.233 0.000 1.349 sum -32.812 -9.173 -2.338 34.151 Atomic orbital electron populations 1.21831 0.90175 1.04658 1.03766 1.23108 0.97489 0.79276 1.02586 1.86241 1.12372 1.32021 1.89055 1.21999 0.86364 0.90512 1.00673 1.22423 0.90055 0.99835 1.05323 1.23891 0.96331 0.84338 1.07641 1.16472 0.81488 0.85669 0.77010 1.90898 1.85259 1.14157 1.51253 1.45883 1.04130 1.11919 1.72293 1.21063 0.83906 0.93229 0.97042 1.21694 0.92448 0.98709 1.02110 1.21994 0.96867 0.99123 0.98606 1.20510 0.85638 0.92790 0.94580 1.42860 1.01953 1.04624 1.90250 1.19053 0.83358 0.92692 1.40343 0.92283 1.25458 0.94762 1.02354 1.03143 1.69879 0.98026 1.35514 1.60247 0.85449 0.77487 0.81147 0.77935 1.20697 1.22611 1.17701 1.21685 0.93930 0.98709 1.01171 1.21780 0.97186 1.00074 0.96362 1.84941 1.22662 1.18372 1.68395 1.73992 0.90705 1.22372 1.25252 0.91269 0.91245 0.87841 0.91380 0.91407 0.78045 0.74128 0.89886 0.89916 0.89876 0.93411 0.92626 0.93513 0.80377 0.93549 0.91905 0.91726 0.91451 0.90337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 71.98 0.74 -0.23 16 2 C 0.05 0.58 6.38 71.98 0.46 1.04 16 3 O -0.29 -4.95 10.21 -90.61 -0.92 -5.87 16 4 C 0.20 3.75 8.00 85.78 0.69 4.43 16 5 C -0.15 -2.66 10.97 22.79 0.25 -2.41 16 6 C -0.06 -0.98 7.29 24.36 0.18 -0.80 16 7 C 0.61 12.03 7.78 86.70 0.67 12.71 16 8 O -0.54 -14.17 16.57 -3.95 -0.07 -14.24 16 9 N -0.69 -11.19 5.07 -445.71 -2.26 -13.45 16 10 C 0.15 3.04 2.46 44.99 0.11 3.15 16 11 C -0.11 -2.28 5.39 30.59 0.16 -2.11 16 12 C -0.13 -3.79 5.50 30.59 0.17 -3.62 16 13 C 0.17 5.99 2.77 44.99 0.12 6.12 16 14 N -0.75 -34.09 4.93 -322.94 -1.59 -35.68 16 15 C -0.22 -12.47 10.41 84.03 0.87 -11.60 16 16 H 0.06 3.60 8.06 -2.91 -0.02 3.57 16 17 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 18 N -0.99 -63.04 13.97 21.65 0.30 -62.74 16 19 Si 0.95 45.55 27.74 68.60 1.90 47.45 16 20 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 22 H -0.25 -10.91 6.52 99.48 0.65 -10.27 16 23 C -0.12 -3.24 5.39 30.60 0.16 -3.07 16 24 C -0.12 -2.52 5.49 30.59 0.17 -2.35 16 25 O 0.12 2.13 11.03 65.72 0.72 2.85 16 26 N -0.40 -7.66 11.50 -172.02 -1.98 -9.64 16 27 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.20 2.88 8.06 -2.91 -0.02 2.86 16 33 H 0.42 4.65 8.43 -92.70 -0.78 3.87 16 34 H 0.08 1.93 7.58 -2.39 -0.02 1.91 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.05 1.71 8.08 -2.39 -0.02 1.70 16 40 H 0.36 15.97 5.66 -92.70 -0.52 15.44 16 41 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 42 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 45 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -71.31 375.37 0.99 -70.32 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: -0.35 Total: 23.17 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 5.23 Total: -2.16 kcal Atomic # 7 Polarization: -115.99 SS G_CDS: -5.53 Total: -121.51 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.27 Total: -17.26 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.90 Total: 47.45 kcal Total: -71.31 0.99 -70.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026529279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.339 kcal (2) G-P(sol) polarization free energy of solvation -71.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds