Wall clock time and date at job start Tue Mar 31 2020 14:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.46932 * 2 1 4 4 C 1.35357 * 117.00050 * 180.02562 * 3 2 1 5 5 N 1.30548 * 125.44771 * 179.97438 * 4 3 2 6 6 C 1.36323 * 108.38202 * 179.97438 * 5 4 3 7 7 C 1.47372 * 126.41170 * 180.02562 * 6 5 4 8 8 O 1.21618 * 120.00137 * 187.13617 * 7 6 5 9 9 N 1.34781 * 119.99628 * 7.13116 * 7 6 5 10 10 C 1.46929 * 120.62658 * 187.24405 * 9 7 6 11 11 C 1.53197 * 108.77752 * 233.58808 * 10 9 7 12 12 C 1.53046 * 109.31041 * 305.36944 * 11 10 9 13 13 C 1.53045 * 109.53722 * 61.36424 * 12 11 10 14 14 H 1.08993 * 109.49594 * 58.61571 * 13 12 11 15 15 N 1.46499 * 109.49046 * 178.68477 * 13 12 11 16 16 C 1.46490 * 120.00567 * 60.00147 * 15 13 12 17 17 C 1.36948 * 119.99556 * 239.99574 * 15 13 12 18 18 H 1.08001 * 119.99800 * 24.18976 * 17 15 13 19 19 C 1.38809 * 119.99893 * 204.19591 * 17 15 13 20 20 N 1.31618 * 120.00057 * 10.94038 * 19 17 15 21 21 Si 1.86797 * 119.99866 * 190.94599 * 19 17 15 22 22 H 1.48507 * 109.47326 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47359 * 119.99323 * 21 19 17 24 24 H 1.48499 * 109.47123 * 239.99761 * 21 19 17 25 25 C 1.46920 * 120.63250 * 6.97175 * 9 7 6 26 26 C 1.35915 * 107.17705 * 0.02562 * 6 5 4 27 27 O 1.34202 * 125.44476 * 359.97438 * 4 3 2 28 28 H 1.09006 * 109.47262 * 60.00256 * 1 2 3 29 29 H 1.09006 * 109.46889 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47110 * 299.99907 * 1 2 3 31 31 H 1.09004 * 109.47593 * 240.00197 * 2 1 3 32 32 H 1.08996 * 109.47357 * 119.99947 * 2 1 3 33 33 H 1.09001 * 109.58995 * 353.37976 * 10 9 7 34 34 H 1.09002 * 109.58135 * 113.65846 * 10 9 7 35 35 H 1.09001 * 109.49513 * 65.31885 * 11 10 9 36 36 H 1.08995 * 109.49548 * 185.41479 * 11 10 9 37 37 H 1.08992 * 109.45576 * 181.38296 * 12 11 10 38 38 H 1.08997 * 109.46016 * 301.34387 * 12 11 10 39 39 H 1.09000 * 109.47434 * 86.60978 * 16 15 13 40 40 H 1.09006 * 109.47544 * 206.60769 * 16 15 13 41 41 H 1.08997 * 109.47331 * 326.60623 * 16 15 13 42 42 H 0.97001 * 119.99548 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.58319 * 246.19789 * 25 9 7 44 44 H 1.08999 * 109.58561 * 6.62126 * 25 9 7 45 45 H 1.07999 * 126.45228 * 179.73897 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3482 1.5247 -0.0005 5 7 3.9594 2.6783 -0.0011 6 6 5.3038 2.4525 -0.0009 7 6 6.3629 3.4772 -0.0009 8 8 7.5267 3.1490 -0.1316 9 7 6.0418 4.7782 0.1439 10 6 7.0631 5.8230 -0.0116 11 6 7.0554 6.7099 1.2375 12 6 5.6401 7.2439 1.4704 13 6 4.6831 6.0725 1.7037 14 1 5.0199 5.4934 2.5634 15 7 3.3348 6.5860 1.9576 16 6 2.6578 7.3992 0.9446 17 6 2.7072 6.3057 3.1421 18 1 3.2906 6.0661 4.0188 19 6 1.3213 6.3293 3.2158 20 7 0.6049 6.4064 2.1144 21 14 0.4729 6.2518 4.8782 22 1 1.4952 6.1696 5.9523 23 1 -0.3510 7.4722 5.0709 24 1 -0.3997 5.0515 4.9332 25 6 4.6628 5.1788 0.4543 26 6 5.4845 1.1054 -0.0008 27 8 4.2630 0.5429 -0.0006 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 8.0438 5.3614 -0.1260 34 1 6.8381 6.4257 -0.8916 35 1 7.3701 6.1243 2.1013 36 1 7.7406 7.5454 1.0946 37 1 5.6370 7.8949 2.3445 38 1 5.3166 7.8085 0.5960 39 1 2.1371 6.7470 0.2435 40 1 1.9385 8.0592 1.4296 41 1 3.3939 7.9967 0.4068 42 1 -0.3636 6.4232 2.1660 43 1 4.2448 5.7316 -0.3869 44 1 4.0594 4.2919 0.6476 45 1 6.4308 0.5850 -0.0047 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027479528.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:07 Heat of formation + Delta-G solvation = -2.330932 kcal Electronic energy + Delta-G solvation = -28762.093508 eV Core-core repulsion = 24783.764837 eV Total energy + Delta-G solvation = -3978.328670 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.40055 -39.74667 -38.89609 -37.32911 -34.99996 -34.81066 -32.31945 -31.98686 -31.23292 -29.47364 -28.55876 -25.91039 -25.60128 -24.01763 -23.43515 -23.17987 -22.41399 -21.16281 -19.98534 -19.13885 -18.01071 -17.53942 -17.09944 -16.55472 -16.42107 -15.67323 -15.61256 -15.02734 -14.88549 -14.60361 -14.02263 -13.82353 -13.57352 -13.41524 -13.23860 -13.02327 -12.90492 -12.59158 -12.46743 -12.19609 -11.91308 -11.78826 -11.47640 -11.19645 -10.97859 -10.83041 -10.75700 -10.66248 -10.45528 -10.27056 -10.22795 -10.09675 -9.77492 -9.73424 -9.23160 -8.66955 -8.47097 -8.18488 -6.62927 -5.66639 -3.11210 1.17124 1.93772 2.16419 2.74371 3.23869 3.40563 3.47159 3.47581 3.49641 4.41360 4.56729 4.61989 4.62952 4.90858 4.91802 5.02644 5.25569 5.33647 5.43114 5.45456 5.52163 5.55410 5.55974 5.69092 5.71256 5.84929 5.87231 5.89641 6.09004 6.21104 6.30342 6.40843 6.49624 6.60410 6.75184 6.84310 6.95973 7.09710 7.28101 7.48997 7.57517 7.77532 7.81920 7.88677 8.34651 8.49575 9.31431 9.94182 10.44478 11.39283 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.007850 B = 0.006206 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3566.001595 B = 4510.897604 C = 7439.003708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.237 6.237 4 C 0.385 3.615 5 N -0.436 5.436 6 C -0.039 4.039 7 C 0.600 3.400 8 O -0.554 6.554 9 N -0.585 5.585 10 C 0.112 3.888 11 C -0.129 4.129 12 C -0.135 4.135 13 C 0.169 3.831 14 H 0.061 0.939 15 N -0.588 5.588 16 C 0.162 3.838 17 C -0.251 4.251 18 H 0.066 0.934 19 C 0.004 3.996 20 N -0.902 5.902 21 Si 0.901 3.099 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.065 3.935 26 C -0.009 4.009 27 O -0.229 6.229 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.019 0.981 40 H 0.055 0.945 41 H -0.005 1.005 42 H 0.251 0.749 43 H 0.060 0.940 44 H 0.139 0.861 45 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.340 -11.061 -6.354 14.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.145 6.145 4 C 0.140 3.860 5 N -0.182 5.182 6 C -0.158 4.158 7 C 0.387 3.613 8 O -0.434 6.434 9 N -0.316 5.316 10 C -0.010 4.010 11 C -0.167 4.167 12 C -0.175 4.175 13 C 0.059 3.941 14 H 0.079 0.921 15 N -0.310 5.310 16 C 0.018 3.982 17 C -0.381 4.381 18 H 0.084 0.916 19 C -0.195 4.195 20 N -0.547 5.547 21 Si 0.732 3.268 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.218 1.218 25 C -0.058 4.058 26 C -0.081 4.081 27 O -0.121 6.121 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.038 0.962 40 H 0.074 0.926 41 H 0.013 0.987 42 H 0.061 0.939 43 H 0.078 0.922 44 H 0.156 0.844 45 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 6.147 -10.539 -6.430 13.791 hybrid contribution -0.455 -0.826 0.839 1.262 sum 5.692 -11.365 -5.591 13.886 Atomic orbital electron populations 1.21810 0.91279 1.03285 1.04654 1.23022 0.96994 0.79642 1.02629 1.86510 1.08821 1.30304 1.88855 1.23749 0.83479 0.81608 0.97154 1.71368 1.03585 1.19804 1.23435 1.21719 0.90464 0.93830 1.09756 1.16767 0.85855 0.81716 0.76930 1.90761 1.18422 1.81240 1.52952 1.48148 1.12001 1.04528 1.66882 1.21644 0.92332 0.89048 0.98025 1.21881 0.98321 0.98855 0.97687 1.22106 0.93747 0.99864 1.01746 1.20728 0.86686 0.91805 0.94838 0.92097 1.43881 1.12956 1.57067 1.17103 1.20766 0.93161 0.93204 0.91114 1.19236 0.89036 1.42767 0.87027 0.91625 1.25030 0.96674 1.01089 0.96658 1.70080 1.04784 1.54743 1.25126 0.86232 0.79528 0.77179 0.83893 1.20419 1.21680 1.21828 1.23648 0.79756 1.03659 0.98738 1.24798 0.85822 0.92781 1.04742 1.84366 1.16208 1.39437 1.72119 0.90915 0.89715 0.90621 0.91082 0.90958 0.89456 0.91582 0.91817 0.91313 0.91881 0.92290 0.96245 0.92587 0.98698 0.93893 0.92166 0.84386 0.75065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.16 0.38 -0.94 16 2 C 0.05 0.53 6.38 37.16 0.24 0.76 16 3 O -0.24 -3.65 10.19 -40.99 -0.42 -4.07 16 4 C 0.39 6.25 8.98 52.22 0.47 6.72 16 5 N -0.44 -8.17 7.87 -11.71 -0.09 -8.26 16 6 C -0.04 -0.66 6.66 -82.99 -0.55 -1.21 16 7 C 0.60 10.71 7.67 -12.54 -0.10 10.62 16 8 O -0.55 -10.25 16.32 5.26 0.09 -10.17 16 9 N -0.59 -10.40 2.97 -173.79 -0.52 -10.91 16 10 C 0.11 1.68 6.44 -3.71 -0.02 1.66 16 11 C -0.13 -1.88 6.08 -26.61 -0.16 -2.04 16 12 C -0.14 -2.40 5.11 -26.68 -0.14 -2.54 16 13 C 0.17 3.60 2.76 -67.58 -0.19 3.41 16 14 H 0.06 1.37 7.87 -51.93 -0.41 0.96 16 15 N -0.59 -14.89 2.81 -173.09 -0.49 -15.37 16 16 C 0.16 4.03 7.97 59.84 0.48 4.51 16 17 C -0.25 -6.96 9.58 -15.06 -0.14 -7.10 16 18 H 0.07 1.81 7.83 -52.49 -0.41 1.39 16 19 C 0.00 0.11 5.09 -17.43 -0.09 0.02 16 20 N -0.90 -26.34 10.72 55.49 0.59 -25.75 16 21 Si 0.90 22.02 29.57 -169.99 -5.03 16.99 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 C 0.07 1.32 5.48 -3.49 -0.02 1.30 16 26 C -0.01 -0.12 11.94 29.90 0.36 0.24 16 27 O -0.23 -3.08 10.20 -17.74 -0.18 -3.26 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 1.28 7.00 -51.93 -0.36 0.91 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.06 1.05 6.74 -51.93 -0.35 0.70 16 39 H 0.02 0.52 7.79 -51.93 -0.40 0.11 16 40 H 0.06 1.51 6.78 -51.93 -0.35 1.16 16 41 H -0.01 -0.12 6.47 -51.93 -0.34 -0.45 16 42 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.06 1.26 7.53 -51.93 -0.39 0.87 16 44 H 0.14 3.10 4.11 -60.44 -0.25 2.85 16 45 H 0.23 2.14 8.06 -52.49 -0.42 1.71 16 LS Contribution 364.14 15.07 5.49 5.49 Total: -1.00 -32.79 364.14 -6.67 -39.46 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -6.63 Total: 0.44 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: 0.51 Total: 15.42 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: -0.50 Total: -60.29 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.51 Total: -17.50 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.79 -6.67 -39.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027479528.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.127 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds