Wall clock time and date at job start Tue Mar 31 2020 14:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.46932 * 2 1 4 4 C 1.35357 * 117.00050 * 180.02562 * 3 2 1 5 5 N 1.30548 * 125.44771 * 179.97438 * 4 3 2 6 6 C 1.36323 * 108.38202 * 179.97438 * 5 4 3 7 7 C 1.47372 * 126.41170 * 180.02562 * 6 5 4 8 8 O 1.21618 * 120.00137 * 187.13617 * 7 6 5 9 9 N 1.34781 * 119.99628 * 7.13116 * 7 6 5 10 10 C 1.46929 * 120.62658 * 187.24405 * 9 7 6 11 11 C 1.53197 * 108.77752 * 233.58808 * 10 9 7 12 12 C 1.53046 * 109.31041 * 305.36944 * 11 10 9 13 13 C 1.53045 * 109.53722 * 61.36424 * 12 11 10 14 14 H 1.08993 * 109.49594 * 58.61571 * 13 12 11 15 15 N 1.46499 * 109.49046 * 178.68477 * 13 12 11 16 16 C 1.46490 * 120.00567 * 60.00147 * 15 13 12 17 17 C 1.36948 * 119.99556 * 239.99574 * 15 13 12 18 18 H 1.08001 * 119.99800 * 24.18976 * 17 15 13 19 19 C 1.38809 * 119.99893 * 204.19591 * 17 15 13 20 20 N 1.31618 * 120.00057 * 10.94038 * 19 17 15 21 21 Si 1.86797 * 119.99866 * 190.94599 * 19 17 15 22 22 H 1.48507 * 109.47326 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47359 * 119.99323 * 21 19 17 24 24 H 1.48499 * 109.47123 * 239.99761 * 21 19 17 25 25 C 1.46920 * 120.63250 * 6.97175 * 9 7 6 26 26 C 1.35915 * 107.17705 * 0.02562 * 6 5 4 27 27 O 1.34202 * 125.44476 * 359.97438 * 4 3 2 28 28 H 1.09006 * 109.47262 * 60.00256 * 1 2 3 29 29 H 1.09006 * 109.46889 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47110 * 299.99907 * 1 2 3 31 31 H 1.09004 * 109.47593 * 240.00197 * 2 1 3 32 32 H 1.08996 * 109.47357 * 119.99947 * 2 1 3 33 33 H 1.09001 * 109.58995 * 353.37976 * 10 9 7 34 34 H 1.09002 * 109.58135 * 113.65846 * 10 9 7 35 35 H 1.09001 * 109.49513 * 65.31885 * 11 10 9 36 36 H 1.08995 * 109.49548 * 185.41479 * 11 10 9 37 37 H 1.08992 * 109.45576 * 181.38296 * 12 11 10 38 38 H 1.08997 * 109.46016 * 301.34387 * 12 11 10 39 39 H 1.09000 * 109.47434 * 86.60978 * 16 15 13 40 40 H 1.09006 * 109.47544 * 206.60769 * 16 15 13 41 41 H 1.08997 * 109.47331 * 326.60623 * 16 15 13 42 42 H 0.97001 * 119.99548 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.58319 * 246.19789 * 25 9 7 44 44 H 1.08999 * 109.58561 * 6.62126 * 25 9 7 45 45 H 1.07999 * 126.45228 * 179.73897 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3482 1.5247 -0.0005 5 7 3.9594 2.6783 -0.0011 6 6 5.3038 2.4525 -0.0009 7 6 6.3629 3.4772 -0.0009 8 8 7.5267 3.1490 -0.1316 9 7 6.0418 4.7782 0.1439 10 6 7.0631 5.8230 -0.0116 11 6 7.0554 6.7099 1.2375 12 6 5.6401 7.2439 1.4704 13 6 4.6831 6.0725 1.7037 14 1 5.0199 5.4934 2.5634 15 7 3.3348 6.5860 1.9576 16 6 2.6578 7.3992 0.9446 17 6 2.7072 6.3057 3.1421 18 1 3.2906 6.0661 4.0188 19 6 1.3213 6.3293 3.2158 20 7 0.6049 6.4064 2.1144 21 14 0.4729 6.2518 4.8782 22 1 1.4952 6.1696 5.9523 23 1 -0.3510 7.4722 5.0709 24 1 -0.3997 5.0515 4.9332 25 6 4.6628 5.1788 0.4543 26 6 5.4845 1.1054 -0.0008 27 8 4.2630 0.5429 -0.0006 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 8.0438 5.3614 -0.1260 34 1 6.8381 6.4257 -0.8916 35 1 7.3701 6.1243 2.1013 36 1 7.7406 7.5454 1.0946 37 1 5.6370 7.8949 2.3445 38 1 5.3166 7.8085 0.5960 39 1 2.1371 6.7470 0.2435 40 1 1.9385 8.0592 1.4296 41 1 3.3939 7.9967 0.4068 42 1 -0.3636 6.4232 2.1660 43 1 4.2448 5.7316 -0.3869 44 1 4.0594 4.2919 0.6476 45 1 6.4308 0.5850 -0.0047 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027479528.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:06 Heat of formation + Delta-G solvation = -25.206040 kcal Electronic energy + Delta-G solvation = -28763.085447 eV Core-core repulsion = 24783.764837 eV Total energy + Delta-G solvation = -3979.320610 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.56975 -41.12894 -39.97341 -38.88912 -36.62145 -36.19502 -33.85206 -33.09435 -32.75511 -30.65329 -30.27846 -27.99807 -26.93850 -25.32236 -24.95916 -24.35434 -23.67592 -22.49525 -21.38826 -20.55425 -19.36125 -18.75986 -18.66515 -18.26442 -17.48398 -17.06646 -16.85745 -16.62064 -16.07775 -16.01108 -15.66686 -15.28316 -15.17590 -14.85319 -14.56603 -14.35158 -14.02040 -13.92251 -13.75812 -13.56846 -13.46282 -13.00883 -12.83507 -12.69314 -12.55302 -12.49306 -12.25734 -12.13308 -12.08910 -11.97413 -11.81191 -11.56926 -11.50378 -11.43658 -10.75763 -10.53407 -9.88828 -9.59326 -8.67092 -7.80256 -5.27445 0.02100 0.82084 0.90374 1.45200 1.46024 1.56509 1.69483 1.94574 2.16301 2.51971 3.14253 3.35038 3.68496 3.73693 3.90080 3.93710 3.97558 4.04335 4.09613 4.21056 4.21923 4.30941 4.36448 4.43821 4.57859 4.64173 4.75179 4.82728 4.83192 4.84256 5.01833 5.04961 5.08653 5.14256 5.21205 5.33084 5.43098 5.52283 5.61127 5.64150 5.73703 5.83495 6.25087 6.38582 6.51031 6.99673 7.19112 7.90298 8.35411 9.24102 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.007850 B = 0.006206 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3566.001595 B = 4510.897604 C = 7439.003708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.042 3.958 3 O -0.264 6.264 4 C 0.382 3.618 5 N -0.481 5.481 6 C -0.083 4.083 7 C 0.601 3.399 8 O -0.562 6.562 9 N -0.590 5.590 10 C 0.108 3.892 11 C -0.117 4.117 12 C -0.125 4.125 13 C 0.166 3.834 14 H 0.043 0.957 15 N -0.603 5.603 16 C 0.181 3.819 17 C -0.261 4.261 18 H 0.063 0.937 19 C -0.048 4.048 20 N -0.932 5.932 21 Si 0.964 3.036 22 H -0.269 1.269 23 H -0.288 1.288 24 H -0.293 1.293 25 C 0.083 3.917 26 C 0.032 3.968 27 O -0.213 6.213 28 H 0.066 0.934 29 H 0.119 0.881 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.104 0.896 37 H 0.057 0.943 38 H 0.061 0.939 39 H -0.008 1.008 40 H 0.029 0.971 41 H 0.025 0.975 42 H 0.247 0.753 43 H 0.047 0.953 44 H 0.121 0.879 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.992 -12.218 -6.300 15.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 O -0.173 6.173 4 C 0.136 3.864 5 N -0.227 5.227 6 C -0.200 4.200 7 C 0.389 3.611 8 O -0.443 6.443 9 N -0.320 5.320 10 C -0.013 4.013 11 C -0.156 4.156 12 C -0.164 4.164 13 C 0.058 3.942 14 H 0.061 0.939 15 N -0.326 5.326 16 C 0.037 3.963 17 C -0.391 4.391 18 H 0.081 0.919 19 C -0.243 4.243 20 N -0.578 5.578 21 Si 0.793 3.207 22 H -0.194 1.194 23 H -0.215 1.215 24 H -0.220 1.220 25 C -0.042 4.042 26 C -0.041 4.041 27 O -0.104 6.104 28 H 0.085 0.915 29 H 0.137 0.863 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.123 0.877 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.010 0.990 40 H 0.048 0.952 41 H 0.044 0.956 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.138 0.862 45 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 7.841 -11.706 -6.378 15.466 hybrid contribution -0.926 -0.574 0.789 1.345 sum 6.915 -12.280 -5.589 15.161 Atomic orbital electron populations 1.21873 0.90344 1.05106 1.03426 1.23442 0.97718 0.77729 1.04284 1.86508 1.08485 1.33486 1.88833 1.23618 0.84048 0.81667 0.97058 1.71192 1.04961 1.21689 1.24869 1.21746 0.89805 0.95183 1.13312 1.16890 0.86040 0.81819 0.76374 1.90741 1.18644 1.81336 1.53588 1.48123 1.11354 1.05384 1.67144 1.21861 0.91991 0.88678 0.98792 1.21824 0.96624 0.99806 0.97316 1.21949 0.94811 0.98090 1.01558 1.20856 0.85427 0.93247 0.94633 0.93890 1.44056 1.14230 1.57680 1.16597 1.20457 0.93163 0.92377 0.90349 1.19492 0.89482 1.42166 0.88003 0.91894 1.25755 0.97290 1.01370 0.99888 1.70241 1.04625 1.55978 1.26966 0.85247 0.78387 0.76822 0.80252 1.19388 1.21492 1.21972 1.23149 0.81134 1.02465 0.97438 1.25616 0.86644 0.91692 1.00105 1.84410 1.16010 1.38424 1.71563 0.91497 0.86282 0.92454 0.88872 0.89760 0.88472 0.90121 0.92272 0.87720 0.92421 0.92012 0.98986 0.95206 0.95625 0.94322 0.93450 0.86249 0.70843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 10.28 71.98 0.74 -1.75 16 2 C 0.04 0.81 6.38 71.98 0.46 1.27 16 3 O -0.26 -8.29 10.19 -64.26 -0.65 -8.95 16 4 C 0.38 12.43 8.98 130.43 1.17 13.61 16 5 N -0.48 -18.40 7.87 -419.39 -3.30 -21.70 16 6 C -0.08 -2.75 6.66 40.31 0.27 -2.49 16 7 C 0.60 20.96 7.67 86.65 0.66 21.63 16 8 O -0.56 -19.82 16.32 -4.09 -0.07 -19.89 16 9 N -0.59 -20.63 2.97 -821.99 -2.44 -23.07 16 10 C 0.11 3.03 6.44 86.36 0.56 3.58 16 11 C -0.12 -3.15 6.08 30.68 0.19 -2.96 16 12 C -0.12 -4.29 5.11 30.62 0.16 -4.13 16 13 C 0.17 7.18 2.76 45.22 0.12 7.30 16 14 H 0.04 1.98 7.87 -2.39 -0.02 1.96 16 15 N -0.60 -31.25 2.81 -701.55 -1.97 -33.23 16 16 C 0.18 9.27 7.97 127.77 1.02 10.29 16 17 C -0.26 -14.81 9.58 84.03 0.80 -14.01 16 18 H 0.06 3.53 7.83 -2.91 -0.02 3.51 16 19 C -0.05 -2.72 5.09 84.86 0.43 -2.29 16 20 N -0.93 -56.16 10.72 21.65 0.23 -55.92 16 21 Si 0.96 46.03 29.57 68.60 2.03 48.06 16 22 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 23 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 24 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 25 C 0.08 3.41 5.48 86.51 0.47 3.89 16 26 C 0.03 0.77 11.94 67.28 0.80 1.57 16 27 O -0.21 -5.36 10.20 18.94 0.19 -5.16 16 28 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.12 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.10 2.59 7.00 -2.39 -0.02 2.57 16 34 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.10 2.13 8.14 -2.39 -0.02 2.12 16 37 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 38 H 0.06 2.09 6.74 -2.39 -0.02 2.07 16 39 H -0.01 -0.46 7.79 -2.39 -0.02 -0.48 16 40 H 0.03 1.64 6.78 -2.38 -0.02 1.62 16 41 H 0.03 1.12 6.47 -2.39 -0.02 1.11 16 42 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 43 H 0.05 2.04 7.53 -2.39 -0.02 2.03 16 44 H 0.12 5.58 4.11 -19.20 -0.08 5.50 16 45 H 0.28 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -73.47 364.14 2.81 -70.66 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.93 Total: 13.69 kcal Atomic # 6 Polarization: 27.65 SS G_CDS: 7.86 Total: 35.51 kcal Atomic # 7 Polarization: -126.44 SS G_CDS: -7.48 Total: -133.92 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -0.53 Total: -34.00 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -73.47 2.81 -70.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027479528.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.458 kcal (2) G-P(sol) polarization free energy of solvation -73.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds