Wall clock time and date at job start Tue Mar 31 2020 14:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42893 * 109.47099 * 2 1 4 4 C 1.35353 * 117.00194 * 180.02562 * 3 2 1 5 5 N 1.30554 * 125.44771 * 180.29788 * 4 3 2 6 6 C 1.36326 * 108.38436 * 180.16104 * 5 4 3 7 7 C 1.47363 * 126.41644 * 179.82298 * 6 5 4 8 8 O 1.21625 * 120.00163 * 185.99325 * 7 6 5 9 9 N 1.34782 * 120.00022 * 6.00008 * 7 6 5 10 10 C 1.46917 * 120.63292 * 185.91884 * 9 7 6 11 11 C 1.53194 * 108.89506 * 126.45892 * 10 9 7 12 12 C 1.53042 * 109.31117 * 54.56159 * 11 10 9 13 13 C 1.53031 * 109.53748 * 298.63438 * 12 11 10 14 14 H 1.08994 * 109.50575 * 301.38286 * 13 12 11 15 15 N 1.46508 * 109.49779 * 181.31353 * 13 12 11 16 16 C 1.46502 * 119.99968 * 300.00721 * 15 13 12 17 17 C 1.36938 * 119.99797 * 119.99946 * 15 13 12 18 18 H 1.08001 * 119.99748 * 323.76358 * 17 15 13 19 19 C 1.38810 * 119.99854 * 143.76016 * 17 15 13 20 20 N 1.31624 * 119.99823 * 156.33484 * 19 17 15 21 21 Si 1.86803 * 120.00043 * 336.33892 * 19 17 15 22 22 H 1.48493 * 109.47074 * 95.30777 * 21 19 17 23 23 H 1.48503 * 109.46770 * 215.30510 * 21 19 17 24 24 H 1.48499 * 109.47013 * 335.30546 * 21 19 17 25 25 C 1.46960 * 120.64797 * 5.73175 * 9 7 6 26 26 C 1.35921 * 107.17296 * 359.56456 * 6 5 4 27 27 O 1.34193 * 125.44674 * 359.97438 * 4 3 2 28 28 H 1.09008 * 109.46884 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47313 * 300.00067 * 1 2 3 30 30 H 1.09002 * 109.47086 * 60.00634 * 1 2 3 31 31 H 1.08999 * 109.47004 * 240.00268 * 2 1 3 32 32 H 1.08997 * 109.47057 * 120.00289 * 2 1 3 33 33 H 1.09002 * 109.58988 * 6.60023 * 10 9 7 34 34 H 1.08997 * 109.58791 * 246.31706 * 10 9 7 35 35 H 1.09001 * 109.49787 * 174.51362 * 11 10 9 36 36 H 1.08994 * 109.49628 * 294.57945 * 11 10 9 37 37 H 1.09004 * 109.45711 * 58.65864 * 12 11 10 38 38 H 1.09003 * 109.45754 * 178.61303 * 12 11 10 39 39 H 1.08998 * 109.46952 * 85.09379 * 16 15 13 40 40 H 1.09002 * 109.46596 * 205.09234 * 16 15 13 41 41 H 1.08998 * 109.46799 * 325.08905 * 16 15 13 42 42 H 0.96997 * 119.99657 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.46888 * 113.75745 * 25 9 7 44 44 H 1.09000 * 109.59933 * 353.39973 * 25 9 7 45 45 H 1.08001 * 126.45708 * 180.29609 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3482 1.5246 -0.0005 5 7 3.9594 2.6782 0.0049 6 6 5.3039 2.4525 -0.0014 7 6 6.3630 3.4771 -0.0021 8 8 7.5280 3.1475 -0.1180 9 7 6.0407 4.7795 0.1259 10 6 7.0688 5.8212 -0.0022 11 6 6.6143 6.8404 -1.0517 12 6 5.2277 7.3687 -0.6771 13 6 4.2262 6.2117 -0.6619 14 1 4.2026 5.7378 -1.6431 15 7 2.8931 6.7233 -0.3338 16 6 2.6640 7.4060 0.9420 17 6 1.8612 6.5633 -1.2197 18 1 2.0463 6.6287 -2.2817 19 6 0.5774 6.3169 -0.7528 20 7 -0.4636 6.6163 -1.5005 21 14 0.3272 5.5607 0.9369 22 1 0.0935 6.6381 1.9317 23 1 -0.8482 4.6537 0.9041 24 1 1.5374 4.7891 1.3180 25 6 4.6536 5.1854 0.3922 26 6 5.4846 1.1053 -0.0011 27 8 4.2630 0.5428 -0.0006 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 8.0100 5.3692 -0.3153 34 1 7.2046 6.3205 0.9571 35 1 7.3223 7.6685 -1.0852 36 1 6.5693 6.3604 -2.0293 37 1 5.2685 7.8268 0.3112 38 1 4.9125 8.1123 -1.4090 39 1 2.9277 8.4590 0.8430 40 1 1.6129 7.3190 1.2170 41 1 3.2810 6.9480 1.7151 42 1 -1.3606 6.4438 -1.1744 43 1 4.5899 5.6324 1.3843 44 1 4.0010 4.3139 0.3393 45 1 6.4309 0.5848 -0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027479529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:10 Heat of formation + Delta-G solvation = 4.219324 kcal Electronic energy + Delta-G solvation = -29145.796246 eV Core-core repulsion = 25167.751616 eV Total energy + Delta-G solvation = -3978.044630 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.47988 -39.84976 -38.95609 -37.49198 -35.09691 -34.97364 -32.36626 -32.02360 -31.50087 -29.57927 -29.17194 -26.07463 -25.70536 -24.10250 -23.63089 -23.24555 -22.50309 -21.14490 -20.06168 -19.21570 -18.18365 -17.59412 -17.17519 -16.65242 -16.51229 -15.72507 -15.65950 -15.29248 -14.98578 -14.84612 -14.10745 -13.99771 -13.72428 -13.45773 -13.30245 -13.05086 -12.94014 -12.79203 -12.46028 -12.18950 -12.17563 -12.09616 -11.93010 -11.53391 -11.45548 -10.91530 -10.86871 -10.80968 -10.47956 -10.32833 -10.19836 -10.05335 -9.90396 -9.57429 -9.18741 -8.73025 -8.40285 -8.31314 -6.72799 -5.91370 -3.29540 1.09786 1.87412 2.07659 2.67761 3.15886 3.38538 3.39967 3.55328 3.68046 4.33325 4.58820 4.60485 4.63496 4.84195 4.86583 4.93705 5.10331 5.26208 5.31537 5.36183 5.42611 5.44965 5.50597 5.55106 5.62235 5.73076 5.77292 5.87593 5.94890 6.06478 6.20031 6.31030 6.35622 6.43332 6.48315 6.59501 6.69847 6.78775 6.86148 7.01378 7.27716 7.48596 7.71644 8.12967 8.25850 8.45532 9.07149 9.80393 10.20116 11.24355 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.008088 B = 0.007654 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3461.064198 B = 3657.152862 C = 6643.628605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.052 3.948 3 O -0.238 6.238 4 C 0.388 3.612 5 N -0.437 5.437 6 C -0.040 4.040 7 C 0.601 3.399 8 O -0.551 6.551 9 N -0.584 5.584 10 C 0.112 3.888 11 C -0.130 4.130 12 C -0.134 4.134 13 C 0.172 3.828 14 H 0.072 0.928 15 N -0.598 5.598 16 C 0.111 3.889 17 C -0.261 4.261 18 H 0.078 0.922 19 C 0.036 3.964 20 N -0.902 5.902 21 Si 0.876 3.124 22 H -0.292 1.292 23 H -0.304 1.304 24 H -0.260 1.260 25 C 0.043 3.957 26 C -0.007 4.007 27 O -0.228 6.228 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.015 0.985 40 H 0.048 0.952 41 H 0.026 0.974 42 H 0.261 0.739 43 H 0.054 0.946 44 H 0.155 0.845 45 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.627 -12.349 4.724 16.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.023 4.023 3 O -0.145 6.145 4 C 0.143 3.857 5 N -0.183 5.183 6 C -0.159 4.159 7 C 0.389 3.611 8 O -0.431 6.431 9 N -0.314 5.314 10 C -0.010 4.010 11 C -0.169 4.169 12 C -0.173 4.173 13 C 0.064 3.936 14 H 0.090 0.910 15 N -0.321 5.321 16 C -0.034 4.034 17 C -0.390 4.390 18 H 0.096 0.904 19 C -0.164 4.164 20 N -0.544 5.544 21 Si 0.707 3.293 22 H -0.220 1.220 23 H -0.232 1.232 24 H -0.184 1.184 25 C -0.081 4.081 26 C -0.079 4.079 27 O -0.120 6.120 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.033 0.967 40 H 0.066 0.934 41 H 0.045 0.955 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.171 0.829 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 9.453 -11.859 4.646 15.861 hybrid contribution -0.161 -1.106 1.031 1.520 sum 9.291 -12.964 5.677 16.930 Atomic orbital electron populations 1.21829 0.91235 1.03369 1.04778 1.23048 0.97060 0.79515 1.02708 1.86533 1.08796 1.30467 1.88741 1.23810 0.83494 0.81608 0.96771 1.71113 1.03602 1.19526 1.24028 1.21733 0.90391 0.93870 1.09910 1.16751 0.85900 0.81653 0.76842 1.90772 1.18342 1.81226 1.52744 1.48074 1.10944 1.04526 1.67902 1.21647 0.91449 0.88648 0.99294 1.21895 0.97952 0.98109 0.98895 1.22083 0.94010 0.99808 1.01439 1.20690 0.85111 0.90813 0.96992 0.90975 1.44042 1.05991 1.63663 1.18412 1.21310 0.99394 0.95006 0.87703 1.18763 0.85847 1.44590 0.89757 0.90413 1.25424 0.95581 0.98005 0.97378 1.69895 0.98019 1.47815 1.38631 0.86940 0.77544 0.79490 0.85347 1.22048 1.23249 1.18439 1.23858 0.80484 1.04508 0.99211 1.24811 0.85839 0.92715 1.04560 1.84377 1.16192 1.39351 1.72068 0.89564 0.90917 0.90557 0.90810 0.91007 0.89402 0.91631 0.91131 0.91648 0.92572 0.91525 0.96696 0.93401 0.95502 0.92915 0.92764 0.82896 0.74973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 10.28 37.16 0.38 -1.05 16 2 C 0.05 0.53 6.38 37.16 0.24 0.77 16 3 O -0.24 -3.76 10.19 -40.98 -0.42 -4.18 16 4 C 0.39 6.28 8.98 52.22 0.47 6.75 16 5 N -0.44 -8.14 7.76 -11.72 -0.09 -8.23 16 6 C -0.04 -0.66 6.72 -82.99 -0.56 -1.22 16 7 C 0.60 10.36 7.68 -12.55 -0.10 10.26 16 8 O -0.55 -9.86 16.33 5.26 0.09 -9.77 16 9 N -0.58 -9.97 2.98 -174.03 -0.52 -10.49 16 10 C 0.11 1.61 6.41 -3.71 -0.02 1.58 16 11 C -0.13 -1.82 6.08 -26.61 -0.16 -1.99 16 12 C -0.13 -2.28 5.15 -26.69 -0.14 -2.42 16 13 C 0.17 3.54 2.75 -67.81 -0.19 3.36 16 14 H 0.07 1.62 7.89 -51.93 -0.41 1.21 16 15 N -0.60 -14.43 2.39 -173.34 -0.41 -14.85 16 16 C 0.11 2.47 8.49 59.85 0.51 2.97 16 17 C -0.26 -7.41 9.83 -15.06 -0.15 -7.56 16 18 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 19 C 0.04 1.06 5.26 -17.43 -0.09 0.97 16 20 N -0.90 -27.82 13.97 55.49 0.78 -27.04 16 21 Si 0.88 22.74 25.09 -169.99 -4.26 18.47 16 22 H -0.29 -7.39 6.65 56.52 0.38 -7.02 16 23 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 24 H -0.26 -6.69 7.11 56.52 0.40 -6.29 16 25 C 0.04 0.82 5.67 -3.69 -0.02 0.80 16 26 C -0.01 -0.09 11.94 29.90 0.36 0.27 16 27 O -0.23 -2.98 10.20 -17.74 -0.18 -3.16 16 28 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 1.23 7.04 -51.93 -0.37 0.86 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.93 7.72 -51.93 -0.40 0.53 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.05 1.16 3.44 -51.93 -0.18 0.98 16 41 H 0.03 0.53 6.35 -51.93 -0.33 0.20 16 42 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 43 H 0.05 1.04 6.49 -51.93 -0.34 0.70 16 44 H 0.15 3.28 3.65 -77.78 -0.28 2.99 16 45 H 0.23 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 359.82 15.07 5.42 5.42 Total: -1.00 -34.03 359.82 -5.62 -39.65 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.54 Total: 0.67 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: 0.53 Total: 13.51 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -0.25 Total: -60.61 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.51 Total: -17.11 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.26 Total: 18.47 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.03 -5.62 -39.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027479529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.866 kcal (2) G-P(sol) polarization free energy of solvation -34.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds