Wall clock time and date at job start Tue Mar 31 2020 14:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42893 * 109.47099 * 2 1 4 4 C 1.35353 * 117.00194 * 180.02562 * 3 2 1 5 5 N 1.30554 * 125.44771 * 180.29788 * 4 3 2 6 6 C 1.36326 * 108.38436 * 180.16104 * 5 4 3 7 7 C 1.47363 * 126.41644 * 179.82298 * 6 5 4 8 8 O 1.21625 * 120.00163 * 185.99325 * 7 6 5 9 9 N 1.34782 * 120.00022 * 6.00008 * 7 6 5 10 10 C 1.46917 * 120.63292 * 185.91884 * 9 7 6 11 11 C 1.53194 * 108.89506 * 126.45892 * 10 9 7 12 12 C 1.53042 * 109.31117 * 54.56159 * 11 10 9 13 13 C 1.53031 * 109.53748 * 298.63438 * 12 11 10 14 14 H 1.08994 * 109.50575 * 301.38286 * 13 12 11 15 15 N 1.46508 * 109.49779 * 181.31353 * 13 12 11 16 16 C 1.46502 * 119.99968 * 300.00721 * 15 13 12 17 17 C 1.36938 * 119.99797 * 119.99946 * 15 13 12 18 18 H 1.08001 * 119.99748 * 323.76358 * 17 15 13 19 19 C 1.38810 * 119.99854 * 143.76016 * 17 15 13 20 20 N 1.31624 * 119.99823 * 156.33484 * 19 17 15 21 21 Si 1.86803 * 120.00043 * 336.33892 * 19 17 15 22 22 H 1.48493 * 109.47074 * 95.30777 * 21 19 17 23 23 H 1.48503 * 109.46770 * 215.30510 * 21 19 17 24 24 H 1.48499 * 109.47013 * 335.30546 * 21 19 17 25 25 C 1.46960 * 120.64797 * 5.73175 * 9 7 6 26 26 C 1.35921 * 107.17296 * 359.56456 * 6 5 4 27 27 O 1.34193 * 125.44674 * 359.97438 * 4 3 2 28 28 H 1.09008 * 109.46884 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47313 * 300.00067 * 1 2 3 30 30 H 1.09002 * 109.47086 * 60.00634 * 1 2 3 31 31 H 1.08999 * 109.47004 * 240.00268 * 2 1 3 32 32 H 1.08997 * 109.47057 * 120.00289 * 2 1 3 33 33 H 1.09002 * 109.58988 * 6.60023 * 10 9 7 34 34 H 1.08997 * 109.58791 * 246.31706 * 10 9 7 35 35 H 1.09001 * 109.49787 * 174.51362 * 11 10 9 36 36 H 1.08994 * 109.49628 * 294.57945 * 11 10 9 37 37 H 1.09004 * 109.45711 * 58.65864 * 12 11 10 38 38 H 1.09003 * 109.45754 * 178.61303 * 12 11 10 39 39 H 1.08998 * 109.46952 * 85.09379 * 16 15 13 40 40 H 1.09002 * 109.46596 * 205.09234 * 16 15 13 41 41 H 1.08998 * 109.46799 * 325.08905 * 16 15 13 42 42 H 0.96997 * 119.99657 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.46888 * 113.75745 * 25 9 7 44 44 H 1.09000 * 109.59933 * 353.39973 * 25 9 7 45 45 H 1.08001 * 126.45708 * 180.29609 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3482 1.5246 -0.0005 5 7 3.9594 2.6782 0.0049 6 6 5.3039 2.4525 -0.0014 7 6 6.3630 3.4771 -0.0021 8 8 7.5280 3.1475 -0.1180 9 7 6.0407 4.7795 0.1259 10 6 7.0688 5.8212 -0.0022 11 6 6.6143 6.8404 -1.0517 12 6 5.2277 7.3687 -0.6771 13 6 4.2262 6.2117 -0.6619 14 1 4.2026 5.7378 -1.6431 15 7 2.8931 6.7233 -0.3338 16 6 2.6640 7.4060 0.9420 17 6 1.8612 6.5633 -1.2197 18 1 2.0463 6.6287 -2.2817 19 6 0.5774 6.3169 -0.7528 20 7 -0.4636 6.6163 -1.5005 21 14 0.3272 5.5607 0.9369 22 1 0.0935 6.6381 1.9317 23 1 -0.8482 4.6537 0.9041 24 1 1.5374 4.7891 1.3180 25 6 4.6536 5.1854 0.3922 26 6 5.4846 1.1053 -0.0011 27 8 4.2630 0.5428 -0.0006 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 8.0100 5.3692 -0.3153 34 1 7.2046 6.3205 0.9571 35 1 7.3223 7.6685 -1.0852 36 1 6.5693 6.3604 -2.0293 37 1 5.2685 7.8268 0.3112 38 1 4.9125 8.1123 -1.4090 39 1 2.9277 8.4590 0.8430 40 1 1.6129 7.3190 1.2170 41 1 3.2810 6.9480 1.7151 42 1 -1.3606 6.4438 -1.1744 43 1 4.5899 5.6324 1.3843 44 1 4.0010 4.3139 0.3393 45 1 6.4309 0.5848 -0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027479529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:09 Heat of formation + Delta-G solvation = -21.048703 kcal Electronic energy + Delta-G solvation = -29146.891950 eV Core-core repulsion = 25167.751616 eV Total energy + Delta-G solvation = -3979.140334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.60613 -41.16625 -40.02249 -38.99820 -36.70914 -36.24337 -33.97627 -33.32792 -32.84963 -30.89444 -30.58089 -28.02754 -26.97056 -25.51885 -25.00257 -24.38249 -23.71839 -22.44979 -21.44290 -20.56943 -19.47709 -18.86238 -18.69144 -18.34044 -17.51879 -17.27258 -17.00217 -16.66742 -16.30538 -16.01835 -15.66539 -15.45658 -15.14314 -14.95149 -14.59399 -14.32178 -14.17895 -14.08191 -13.99446 -13.83876 -13.60817 -13.57874 -13.14206 -12.72661 -12.58204 -12.50556 -12.28787 -12.20501 -12.02493 -11.84320 -11.72736 -11.63459 -11.60641 -11.46911 -10.68696 -10.48046 -9.90524 -9.64128 -8.69924 -8.18153 -5.52582 0.00313 0.79496 0.84798 1.30300 1.43735 1.59610 1.66254 1.93743 2.13508 2.45577 3.04407 3.11151 3.47054 3.69923 3.87312 3.89747 3.91571 4.02541 4.06160 4.14799 4.19163 4.27087 4.32092 4.36893 4.54405 4.56945 4.65015 4.71972 4.78428 4.80189 4.84434 4.90864 4.99942 5.03048 5.08368 5.11281 5.21593 5.41501 5.47681 5.56407 5.87952 5.95434 6.17033 6.24202 6.48120 6.97195 7.01903 7.65762 8.07023 9.02044 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.008088 B = 0.007654 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3461.064198 B = 3657.152862 C = 6643.628605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.042 3.958 3 O -0.268 6.268 4 C 0.383 3.617 5 N -0.481 5.481 6 C -0.083 4.083 7 C 0.602 3.398 8 O -0.561 6.561 9 N -0.589 5.589 10 C 0.109 3.891 11 C -0.120 4.120 12 C -0.125 4.125 13 C 0.172 3.828 14 H 0.040 0.960 15 N -0.610 5.610 16 C 0.110 3.890 17 C -0.251 4.251 18 H 0.038 0.962 19 C -0.016 4.016 20 N -0.948 5.948 21 Si 0.942 3.058 22 H -0.278 1.278 23 H -0.310 1.310 24 H -0.258 1.258 25 C 0.054 3.946 26 C 0.035 3.965 27 O -0.211 6.211 28 H 0.122 0.878 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.030 0.970 40 H 0.028 0.972 41 H 0.054 0.946 42 H 0.262 0.738 43 H 0.059 0.941 44 H 0.139 0.861 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.837 -13.704 6.601 19.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.032 4.032 3 O -0.177 6.177 4 C 0.138 3.862 5 N -0.228 5.228 6 C -0.200 4.200 7 C 0.390 3.610 8 O -0.441 6.441 9 N -0.319 5.319 10 C -0.012 4.012 11 C -0.158 4.158 12 C -0.164 4.164 13 C 0.065 3.935 14 H 0.059 0.941 15 N -0.334 5.334 16 C -0.034 4.034 17 C -0.381 4.381 18 H 0.056 0.944 19 C -0.212 4.212 20 N -0.593 5.593 21 Si 0.771 3.229 22 H -0.205 1.205 23 H -0.239 1.239 24 H -0.182 1.182 25 C -0.070 4.070 26 C -0.037 4.037 27 O -0.102 6.102 28 H 0.140 0.860 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.123 0.877 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.049 0.951 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.156 0.844 45 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 11.709 -13.215 6.540 18.829 hybrid contribution -0.781 -0.740 0.347 1.131 sum 10.928 -13.956 6.887 19.016 Atomic orbital electron populations 1.21905 0.90688 1.05231 1.03284 1.23458 0.97485 0.77646 1.04585 1.86516 1.08746 1.33663 1.88804 1.23638 0.83947 0.81739 0.96878 1.70925 1.05079 1.21353 1.25413 1.21762 0.89632 0.95240 1.13408 1.16861 0.86035 0.81810 0.76316 1.90754 1.18603 1.81358 1.53423 1.48065 1.10403 1.05287 1.68118 1.21845 0.90887 0.88110 1.00323 1.21846 0.96674 0.99086 0.98220 1.21945 0.94631 0.97945 1.01887 1.20725 0.84331 0.92538 0.95945 0.94136 1.44091 1.06251 1.64567 1.18470 1.21360 0.98743 0.96017 0.87301 1.18607 0.87247 1.43277 0.88986 0.94410 1.25974 0.95285 0.98780 1.01166 1.70007 0.98472 1.49880 1.40907 0.85891 0.77030 0.78567 0.81406 1.20495 1.23896 1.18166 1.23463 0.81802 1.03401 0.98381 1.25645 0.86604 0.91642 0.99813 1.84421 1.16010 1.38285 1.71490 0.85974 0.92065 0.92334 0.89166 0.88806 0.88661 0.89626 0.87652 0.92742 0.91222 0.92828 0.95131 0.95337 0.92728 0.92927 0.92327 0.84425 0.70710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 10.28 71.98 0.74 -1.97 16 2 C 0.04 0.81 6.38 71.98 0.46 1.27 16 3 O -0.27 -8.50 10.19 -64.22 -0.65 -9.15 16 4 C 0.38 12.20 8.98 130.43 1.17 13.37 16 5 N -0.48 -17.90 7.76 -419.40 -3.26 -21.16 16 6 C -0.08 -2.62 6.72 40.31 0.27 -2.35 16 7 C 0.60 19.86 7.68 86.64 0.67 20.52 16 8 O -0.56 -18.84 16.33 -4.11 -0.07 -18.90 16 9 N -0.59 -19.26 2.98 -822.74 -2.45 -21.71 16 10 C 0.11 2.86 6.41 86.36 0.55 3.41 16 11 C -0.12 -3.09 6.08 30.67 0.19 -2.91 16 12 C -0.12 -4.09 5.15 30.62 0.16 -3.93 16 13 C 0.17 7.11 2.75 45.07 0.12 7.23 16 14 H 0.04 1.90 7.89 -2.39 -0.02 1.88 16 15 N -0.61 -29.69 2.39 -702.33 -1.68 -31.37 16 16 C 0.11 4.75 8.49 127.77 1.08 5.84 16 17 C -0.25 -14.81 9.83 84.03 0.83 -13.99 16 18 H 0.04 2.48 8.06 -2.91 -0.02 2.46 16 19 C -0.02 -0.94 5.26 84.86 0.45 -0.50 16 20 N -0.95 -60.63 13.97 21.65 0.30 -60.33 16 21 Si 0.94 48.26 25.09 68.60 1.72 49.98 16 22 H -0.28 -13.44 6.65 99.48 0.66 -12.78 16 23 H -0.31 -16.02 7.11 99.48 0.71 -15.31 16 24 H -0.26 -12.97 7.11 99.48 0.71 -12.26 16 25 C 0.05 2.04 5.67 86.36 0.49 2.53 16 26 C 0.04 0.79 11.94 67.28 0.80 1.60 16 27 O -0.21 -5.04 10.20 18.96 0.19 -4.85 16 28 H 0.12 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.10 2.40 7.04 -2.39 -0.02 2.38 16 34 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.05 1.53 8.14 -2.39 -0.02 1.52 16 37 H 0.07 2.11 7.72 -2.38 -0.02 2.09 16 38 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.03 1.34 3.44 -2.39 -0.01 1.33 16 41 H 0.05 2.05 6.35 -2.39 -0.02 2.03 16 42 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 43 H 0.06 2.14 6.49 -2.39 -0.02 2.12 16 44 H 0.14 5.93 3.65 -53.43 -0.20 5.73 16 45 H 0.28 3.49 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -77.16 359.82 2.86 -74.29 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.78 Total: 13.09 kcal Atomic # 6 Polarization: 22.13 SS G_CDS: 7.98 Total: 30.11 kcal Atomic # 7 Polarization: -127.49 SS G_CDS: -7.09 Total: -134.57 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.53 Total: -32.90 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 1.72 Total: 49.98 kcal Total: -77.16 2.86 -74.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027479529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.246 kcal (2) G-P(sol) polarization free energy of solvation -77.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds