Wall clock time and date at job start Tue Mar 31 2020 14:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42894 * 109.47206 * 2 1 4 4 C 1.35357 * 117.00111 * 180.02562 * 3 2 1 5 5 N 1.30545 * 125.44359 * 179.71286 * 4 3 2 6 6 C 1.36334 * 108.37965 * 179.89870 * 5 4 3 7 7 C 1.47375 * 126.41143 * 180.12323 * 6 5 4 8 8 O 1.21619 * 119.99568 * 174.42752 * 7 6 5 9 9 N 1.34768 * 119.99876 * 354.42658 * 7 6 5 10 10 C 1.46504 * 120.00506 * 5.26746 * 9 7 6 11 11 C 1.52990 * 109.46924 * 83.54403 * 10 9 7 12 12 C 1.46505 * 120.00023 * 185.26833 * 9 7 6 13 13 H 1.09000 * 110.88904 * 190.07410 * 12 9 7 14 14 C 1.55156 * 111.00328 * 66.18764 * 12 9 7 15 15 C 1.54329 * 102.94321 * 277.42903 * 14 12 9 16 16 N 1.47022 * 107.27168 * 337.81082 * 15 14 12 17 17 C 1.36932 * 125.64514 * 178.98426 * 16 15 14 18 18 H 1.08007 * 119.99619 * 179.97438 * 17 16 15 19 19 C 1.38810 * 120.00415 * 359.97438 * 17 16 15 20 20 N 1.31615 * 119.99576 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00073 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47391 * 59.99627 * 21 19 17 23 23 H 1.48503 * 109.46943 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46975 * 299.99613 * 21 19 17 25 25 C 1.47428 * 108.70416 * 358.93872 * 16 15 14 26 26 C 1.35915 * 107.17444 * 0.36467 * 6 5 4 27 27 O 1.34197 * 125.44398 * 0.02562 * 4 3 2 28 28 H 1.09000 * 109.47167 * 299.99798 * 1 2 3 29 29 H 1.08998 * 109.47275 * 60.00223 * 1 2 3 30 30 H 1.09003 * 109.46839 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46697 * 239.99629 * 2 1 3 32 32 H 1.09003 * 109.47322 * 120.00257 * 2 1 3 33 33 H 1.09000 * 109.47207 * 203.54639 * 10 9 7 34 34 H 1.09008 * 109.46618 * 323.54537 * 10 9 7 35 35 H 1.09000 * 109.47371 * 300.00135 * 11 10 9 36 36 H 1.08996 * 109.47645 * 60.00373 * 11 10 9 37 37 H 1.09002 * 109.46964 * 180.02562 * 11 10 9 38 38 H 1.08992 * 110.72120 * 35.79545 * 14 12 9 39 39 H 1.09007 * 110.71542 * 159.06903 * 14 12 9 40 40 H 1.09004 * 109.87822 * 97.22501 * 15 14 12 41 41 H 1.08998 * 109.88380 * 218.39178 * 15 14 12 42 42 H 0.97005 * 119.99940 * 180.02562 * 20 19 17 43 43 H 1.08999 * 110.36587 * 265.29425 * 25 16 15 44 44 H 1.08992 * 110.36836 * 142.97085 * 25 16 15 45 45 H 1.07997 * 126.45342 * 179.80437 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3482 1.5246 -0.0005 5 7 3.9594 2.6781 -0.0060 6 6 5.3039 2.4523 -0.0023 7 6 6.3631 3.4770 -0.0036 8 8 7.5287 3.1468 0.1024 9 7 6.0398 4.7800 -0.1222 10 6 4.6327 5.1877 -0.1338 11 6 4.1259 5.3114 1.3044 12 6 7.0956 5.7889 -0.2397 13 1 6.6844 6.7942 -0.1491 14 6 7.8758 5.6250 -1.5708 15 6 8.8944 4.5138 -1.2399 16 7 9.0574 4.4920 0.2211 17 6 9.8618 3.6334 0.9216 18 1 9.9128 3.6986 1.9985 19 6 10.6116 2.6791 0.2478 20 7 10.5489 2.5993 -1.0644 21 14 11.7094 1.5083 1.2034 22 1 10.8829 0.7141 2.1476 23 1 12.3980 0.5929 0.2583 24 1 12.7197 2.2868 1.9641 25 6 8.2122 5.5484 0.8069 26 6 5.4846 1.1052 -0.0026 27 8 4.2630 0.5427 -0.0016 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 4.5373 6.1500 -0.6367 34 1 4.0423 4.4404 -0.6641 35 1 4.2213 4.3491 1.8074 36 1 4.7162 6.0586 1.8348 37 1 3.0788 5.6143 1.2959 38 1 7.2083 5.3099 -2.3728 39 1 8.3872 6.5508 -1.8346 40 1 8.5178 3.5509 -1.5853 41 1 9.8500 4.7330 -1.7163 42 1 11.0726 1.9322 -1.5353 43 1 8.7927 6.4585 0.9580 44 1 7.7821 5.2109 1.7497 45 1 6.4309 0.5847 -0.0032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033884321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:00 Heat of formation + Delta-G solvation = 49.324434 kcal Electronic energy + Delta-G solvation = -29359.721806 eV Core-core repulsion = 25383.633080 eV Total energy + Delta-G solvation = -3976.088726 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.24718 -39.63220 -38.98317 -36.14444 -35.29880 -34.30980 -32.21968 -31.97944 -29.78189 -29.23237 -28.64924 -27.06278 -24.67757 -24.02448 -23.57966 -22.51428 -22.32309 -20.71316 -19.75872 -19.16975 -17.69625 -17.50735 -16.84117 -16.29823 -16.18257 -15.68796 -15.60797 -14.91487 -14.49705 -14.35493 -13.85468 -13.58795 -13.51247 -13.22088 -13.18235 -13.02435 -12.89820 -12.09524 -12.01236 -11.95879 -11.73255 -11.58455 -11.52167 -11.34461 -11.09436 -10.69233 -10.67788 -10.63100 -10.54629 -10.16233 -9.93237 -9.67694 -9.59908 -9.34846 -8.79394 -8.44382 -8.28630 -7.68601 -6.18614 -5.35326 -2.59478 1.46087 1.94398 2.35357 2.83288 3.56554 3.58495 3.60762 3.61613 4.07667 4.46474 4.47096 4.62936 4.77300 4.79430 5.07506 5.23761 5.32801 5.38456 5.47689 5.54152 5.60310 5.61289 5.73822 5.78459 5.85029 5.88528 5.96066 5.99018 6.08155 6.19804 6.36361 6.44141 6.57622 6.65743 6.73401 6.75893 6.83524 6.88652 7.46241 7.68278 7.83545 7.96327 8.14654 8.20733 8.61313 9.18565 9.57162 10.19269 10.86600 11.77865 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014481 B = 0.004395 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.104452 B = 6368.959380 C = 7709.162565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.250 6.250 4 C 0.362 3.638 5 N -0.449 5.449 6 C -0.030 4.030 7 C 0.542 3.458 8 O -0.395 6.395 9 N -0.598 5.598 10 C 0.103 3.897 11 C -0.152 4.152 12 C 0.134 3.866 13 H 0.083 0.917 14 C -0.161 4.161 15 C 0.191 3.809 16 N -0.566 5.566 17 C -0.185 4.185 18 H 0.066 0.934 19 C -0.009 4.009 20 N -0.923 5.923 21 Si 0.898 3.102 22 H -0.292 1.292 23 H -0.295 1.295 24 H -0.291 1.291 25 C 0.130 3.870 26 C -0.010 4.010 27 O -0.232 6.232 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.106 0.894 35 H 0.054 0.946 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.030 0.970 42 H 0.243 0.757 43 H 0.022 0.978 44 H 0.035 0.965 45 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.331 -1.150 0.307 20.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.158 6.158 4 C 0.117 3.883 5 N -0.196 5.196 6 C -0.149 4.149 7 C 0.325 3.675 8 O -0.260 6.260 9 N -0.335 5.335 10 C -0.020 4.020 11 C -0.210 4.210 12 C 0.030 3.970 13 H 0.101 0.899 14 C -0.201 4.201 15 C 0.067 3.933 16 N -0.291 5.291 17 C -0.314 4.314 18 H 0.083 0.917 19 C -0.204 4.204 20 N -0.573 5.573 21 Si 0.731 3.269 22 H -0.219 1.219 23 H -0.221 1.221 24 H -0.218 1.218 25 C 0.003 3.997 26 C -0.081 4.081 27 O -0.123 6.123 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.124 0.876 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.048 0.952 42 H 0.054 0.946 43 H 0.040 0.960 44 H 0.053 0.947 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -20.025 -0.912 0.317 20.048 hybrid contribution 0.622 -1.598 0.538 1.797 sum -19.403 -2.510 0.855 19.583 Atomic orbital electron populations 1.21794 0.91512 1.03442 1.04034 1.22979 0.96559 0.79862 1.02939 1.86329 1.09596 1.30335 1.89578 1.23662 0.83184 0.82313 0.99111 1.71439 1.04591 1.20032 1.23569 1.22433 0.89807 0.94716 1.07896 1.17270 0.87106 0.82086 0.81069 1.91731 1.13520 1.79625 1.41091 1.47554 1.06032 1.05349 1.74525 1.21803 0.82020 1.00861 0.97319 1.22018 0.99869 1.01532 0.97617 1.22296 0.87796 0.89665 0.97281 0.89944 1.23404 0.99343 1.01214 0.96105 1.21089 0.93711 0.93949 0.84578 1.44115 1.48528 1.34741 1.01724 1.18749 1.14398 1.08440 0.89825 0.91652 1.24539 1.00943 0.99417 0.95513 1.69944 1.44845 1.37182 1.05328 0.86393 0.80628 0.81366 0.78535 1.21890 1.22076 1.21840 1.21768 0.90634 0.92661 0.94685 1.25019 0.85283 0.93327 1.04485 1.84342 1.16482 1.39245 1.72233 0.91081 0.91065 0.89668 0.90994 0.91009 0.92110 0.87637 0.92717 0.93614 0.92674 0.92439 0.91996 0.92697 0.95170 0.94612 0.96046 0.94692 0.74923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 10.28 37.16 0.38 -0.42 16 2 C 0.05 0.41 6.38 37.16 0.24 0.64 16 3 O -0.25 -2.95 10.19 -40.99 -0.42 -3.37 16 4 C 0.36 5.20 8.98 52.22 0.47 5.67 16 5 N -0.45 -7.22 6.79 -11.71 -0.08 -7.30 16 6 C -0.03 -0.53 6.51 -82.98 -0.54 -1.07 16 7 C 0.54 11.15 7.06 -12.55 -0.09 11.06 16 8 O -0.40 -9.81 8.87 5.26 0.05 -9.76 16 9 N -0.60 -10.79 2.57 -164.94 -0.42 -11.21 16 10 C 0.10 1.52 5.70 -4.04 -0.02 1.50 16 11 C -0.15 -2.10 9.76 37.15 0.36 -1.73 16 12 C 0.13 2.46 3.77 -65.78 -0.25 2.21 16 13 H 0.08 1.25 7.90 -51.93 -0.41 0.84 16 14 C -0.16 -3.18 6.52 -24.89 -0.16 -3.35 16 15 C 0.19 4.87 4.22 -3.06 -0.01 4.85 16 16 N -0.57 -14.90 1.73 -170.07 -0.29 -15.19 16 17 C -0.19 -5.37 8.73 -15.06 -0.13 -5.50 16 18 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 19 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 20 N -0.92 -28.11 10.31 55.49 0.57 -27.54 16 21 Si 0.90 23.21 29.55 -169.99 -5.02 18.18 16 22 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 23 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 24 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 25 C 0.13 2.84 6.18 -2.52 -0.02 2.83 16 26 C -0.01 -0.16 11.94 29.90 0.36 0.19 16 27 O -0.23 -3.30 10.20 -17.75 -0.18 -3.49 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.78 7.92 -51.93 -0.41 0.37 16 34 H 0.11 1.64 5.19 -51.92 -0.27 1.37 16 35 H 0.05 0.86 7.21 -51.93 -0.37 0.49 16 36 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.57 5.85 -51.93 -0.30 1.27 16 41 H 0.03 0.86 7.51 -51.93 -0.39 0.47 16 42 H 0.24 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.23 3.54 8.06 -52.49 -0.42 3.12 16 LS Contribution 358.38 15.07 5.40 5.40 Total: -1.00 -33.93 358.38 -6.69 -40.62 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -6.78 Total: -2.86 kcal Atomic # 6 Polarization: 16.03 SS G_CDS: 0.49 Total: 16.52 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: -0.23 Total: -61.24 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.55 Total: -16.62 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.18 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.93 -6.69 -40.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033884321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.942 kcal (2) G-P(sol) polarization free energy of solvation -33.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds