Wall clock time and date at job start Tue Mar 31 2020 14:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42900 * 109.46902 * 2 1 4 4 C 1.35349 * 117.00127 * 180.02562 * 3 2 1 5 5 N 1.30548 * 125.44814 * 179.97438 * 4 3 2 6 6 C 1.36326 * 108.38511 * 179.97438 * 5 4 3 7 7 C 1.47372 * 126.41347 * 179.97438 * 6 5 4 8 8 O 1.21623 * 119.99802 * 181.92820 * 7 6 5 9 9 N 1.34776 * 119.99983 * 1.92145 * 7 6 5 10 10 C 1.46501 * 119.99826 * 3.18658 * 9 7 6 11 11 C 1.52995 * 109.47134 * 273.97280 * 10 9 7 12 12 C 1.46497 * 119.99986 * 183.18362 * 9 7 6 13 13 H 1.09001 * 110.63944 * 181.69445 * 12 9 7 14 14 C 1.55157 * 110.71991 * 305.02613 * 12 9 7 15 15 C 1.54916 * 101.58180 * 153.86472 * 14 12 9 16 16 N 1.47422 * 104.83028 * 322.99401 * 15 14 12 17 17 C 1.36946 * 125.64765 * 204.16461 * 16 15 14 18 18 H 1.07994 * 119.99743 * 150.14604 * 17 16 15 19 19 C 1.38810 * 119.99539 * 330.14808 * 17 16 15 20 20 N 1.31621 * 119.99729 * 165.75630 * 19 17 16 21 21 Si 1.86796 * 120.00270 * 345.75266 * 19 17 16 22 22 H 1.48498 * 109.47082 * 87.14653 * 21 19 17 23 23 H 1.48501 * 109.47184 * 207.14520 * 21 19 17 24 24 H 1.48496 * 109.47277 * 327.14609 * 21 19 17 25 25 C 1.47021 * 108.70623 * 24.12448 * 16 15 14 26 26 C 1.35915 * 107.17557 * 0.22662 * 6 5 4 27 27 O 1.34206 * 125.44714 * 359.97438 * 4 3 2 28 28 H 1.08996 * 109.47206 * 60.00544 * 1 2 3 29 29 H 1.09005 * 109.46693 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47206 * 299.99852 * 1 2 3 31 31 H 1.08997 * 109.47206 * 240.00148 * 2 1 3 32 32 H 1.08996 * 109.47206 * 119.99455 * 2 1 3 33 33 H 1.08998 * 109.47354 * 33.97928 * 10 9 7 34 34 H 1.09004 * 109.46794 * 153.97515 * 10 9 7 35 35 H 1.08994 * 109.47229 * 300.00138 * 11 10 9 36 36 H 1.08997 * 109.46851 * 60.00701 * 11 10 9 37 37 H 1.08999 * 109.46998 * 179.97438 * 11 10 9 38 38 H 1.08996 * 111.00815 * 271.93656 * 14 12 9 39 39 H 1.09000 * 111.00462 * 35.79242 * 14 12 9 40 40 H 1.09000 * 110.36879 * 204.15592 * 15 14 12 41 41 H 1.08999 * 110.36864 * 81.82908 * 15 14 12 42 42 H 0.97001 * 120.00148 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.88464 * 239.52729 * 25 16 15 44 44 H 1.09002 * 109.88156 * 118.35655 * 25 16 15 45 45 H 1.07995 * 126.45929 * 179.76797 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3481 1.5247 -0.0005 5 7 3.9593 2.6783 -0.0011 6 6 5.3038 2.4526 -0.0009 7 6 6.3629 3.4773 -0.0020 8 8 7.5319 3.1436 -0.0371 9 7 6.0360 4.7843 0.0360 10 6 4.6314 5.1851 0.1486 11 6 4.0040 5.2423 -1.2456 12 6 7.0853 5.8041 -0.0354 13 1 6.6556 6.8032 0.0377 14 6 8.1479 5.5769 1.0721 15 6 9.4013 6.2316 0.4395 16 7 9.3115 5.9092 -0.9962 17 6 10.3652 5.8543 -1.8693 18 1 10.3297 5.1861 -2.7169 19 6 11.4787 6.6574 -1.6645 20 7 12.5940 6.4156 -2.3203 21 14 11.3942 8.0814 -0.4585 22 1 11.7271 7.5959 0.9048 23 1 12.3658 9.1297 -0.8616 24 1 10.0227 8.6507 -0.4601 25 6 7.9037 5.6555 -1.3353 26 6 5.4846 1.1055 -0.0054 27 8 4.2631 0.5429 -0.0006 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 4.0943 4.4593 0.7593 34 1 4.5705 6.1683 0.6151 35 1 4.5410 5.9680 -1.8562 36 1 4.0649 4.2590 -1.7120 37 1 2.9588 5.5400 -1.1617 38 1 7.8655 6.0844 1.9945 39 1 8.3089 4.5131 1.2468 40 1 10.3087 5.8060 0.8679 41 1 9.3811 7.3113 0.5878 42 1 13.3720 6.9771 -2.1775 43 1 7.7935 4.6451 -1.7292 44 1 7.5632 6.3823 -2.0728 45 1 6.4308 0.5850 -0.0100 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033884322.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:03 Heat of formation + Delta-G solvation = 10.358656 kcal Electronic energy + Delta-G solvation = -28310.452997 eV Core-core repulsion = 24332.674588 eV Total energy + Delta-G solvation = -3977.778409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.66959 -40.06093 -39.26810 -37.03811 -35.78069 -34.80337 -32.47753 -32.22683 -30.46054 -29.81664 -29.04559 -27.75950 -25.06085 -24.14282 -23.67388 -22.95259 -22.50360 -21.15066 -20.48899 -19.66533 -18.31819 -17.84861 -17.13981 -16.71849 -16.60272 -15.98174 -15.85073 -15.26028 -15.11698 -14.70481 -14.45128 -13.89107 -13.67160 -13.50312 -13.40480 -13.34384 -13.25424 -12.73110 -12.52152 -12.29205 -12.19554 -12.01754 -11.81211 -11.59069 -11.38215 -11.14052 -10.96465 -10.87548 -10.84499 -10.79302 -10.41013 -10.02684 -9.90549 -9.55878 -9.24844 -8.90714 -8.55912 -8.30723 -6.72663 -5.82612 -3.21484 0.97848 1.61798 1.88958 2.44944 3.05558 3.36815 3.44427 3.53864 3.57929 4.16613 4.26571 4.27350 4.59431 4.64879 4.69247 4.78946 5.11981 5.15441 5.16210 5.17558 5.26463 5.28430 5.42853 5.45653 5.51231 5.55751 5.60834 5.64825 5.69384 5.89818 6.06175 6.13865 6.22218 6.33154 6.44217 6.51567 6.52537 6.68982 6.78471 6.97874 7.13758 7.27560 7.60198 7.99082 8.32761 8.47089 8.98814 9.81372 10.36205 11.34352 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.030030 B = 0.002908 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.169285 B = 9627.511173 C = 9997.522579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.247 6.247 4 C 0.374 3.626 5 N -0.446 5.446 6 C -0.040 4.040 7 C 0.593 3.407 8 O -0.505 6.505 9 N -0.588 5.588 10 C 0.104 3.896 11 C -0.155 4.155 12 C 0.134 3.866 13 H 0.095 0.905 14 C -0.146 4.146 15 C 0.114 3.886 16 N -0.602 5.602 17 C -0.233 4.233 18 H 0.085 0.915 19 C 0.023 3.977 20 N -0.916 5.916 21 Si 0.893 3.107 22 H -0.286 1.286 23 H -0.304 1.304 24 H -0.272 1.272 25 C 0.133 3.867 26 C 0.001 3.999 27 O -0.228 6.228 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.094 0.906 40 H 0.056 0.944 41 H 0.025 0.975 42 H 0.262 0.738 43 H 0.042 0.958 44 H 0.028 0.972 45 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.563 -12.137 7.731 30.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.155 6.155 4 C 0.129 3.871 5 N -0.193 5.193 6 C -0.159 4.159 7 C 0.379 3.621 8 O -0.380 6.380 9 N -0.319 5.319 10 C -0.019 4.019 11 C -0.213 4.213 12 C 0.031 3.969 13 H 0.113 0.887 14 C -0.185 4.185 15 C -0.011 4.011 16 N -0.329 5.329 17 C -0.361 4.361 18 H 0.103 0.897 19 C -0.176 4.176 20 N -0.560 5.560 21 Si 0.724 3.276 22 H -0.213 1.213 23 H -0.232 1.232 24 H -0.198 1.198 25 C 0.007 3.993 26 C -0.071 4.071 27 O -0.119 6.119 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.121 0.879 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.074 0.926 41 H 0.042 0.958 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.046 0.954 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -26.259 -11.615 7.605 29.703 hybrid contribution 0.262 0.012 0.557 0.615 sum -25.997 -11.602 8.162 29.615 Atomic orbital electron populations 1.21808 0.91276 1.03627 1.04181 1.23040 0.96796 0.79484 1.03045 1.86367 1.09167 1.30694 1.89269 1.23607 0.83388 0.81917 0.98213 1.71474 1.03985 1.20179 1.23658 1.21863 0.90166 0.94116 1.09737 1.16731 0.86148 0.81517 0.77694 1.90933 1.17354 1.80815 1.48857 1.47798 1.07831 1.04824 1.71473 1.21874 0.80279 1.01188 0.98549 1.22033 1.00038 1.02101 0.97129 1.22239 0.87220 0.89782 0.97697 0.88723 1.23206 0.95627 1.03452 0.96222 1.21957 0.96452 0.96533 0.86159 1.44494 1.01826 1.83113 1.03463 1.18603 0.93098 1.17780 1.06594 0.89723 1.25268 0.96113 0.98135 0.98061 1.69779 1.01491 1.40172 1.44565 0.86781 0.76657 0.83475 0.80706 1.21319 1.23201 1.19782 1.21588 0.85307 0.99127 0.93282 1.24989 0.85710 0.92964 1.03470 1.84379 1.16309 1.39272 1.71958 0.90955 0.89495 0.90987 0.90816 0.90858 0.87860 0.91200 0.93110 0.92281 0.92128 0.92147 0.88782 0.92563 0.95797 0.92817 0.94029 0.95363 0.74764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 10.28 37.16 0.38 -0.12 16 2 C 0.05 0.27 6.38 37.16 0.24 0.51 16 3 O -0.25 -2.23 10.19 -40.97 -0.42 -2.64 16 4 C 0.37 4.09 8.98 52.22 0.47 4.56 16 5 N -0.45 -5.64 6.42 -11.71 -0.08 -5.71 16 6 C -0.04 -0.55 6.45 -82.99 -0.54 -1.08 16 7 C 0.59 9.86 6.74 -12.54 -0.08 9.78 16 8 O -0.50 -10.12 13.25 5.26 0.07 -10.05 16 9 N -0.59 -9.17 2.55 -165.30 -0.42 -9.59 16 10 C 0.10 1.29 5.68 -4.04 -0.02 1.26 16 11 C -0.15 -1.86 9.68 37.15 0.36 -1.50 16 12 C 0.13 2.39 3.45 -66.10 -0.23 2.16 16 13 H 0.09 1.50 7.81 -51.93 -0.41 1.09 16 14 C -0.15 -2.78 6.39 -24.58 -0.16 -2.94 16 15 C 0.11 2.68 4.81 -2.53 -0.01 2.66 16 16 N -0.60 -15.80 3.08 -170.07 -0.52 -16.33 16 17 C -0.23 -7.07 10.58 -15.06 -0.16 -7.22 16 18 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 19 C 0.02 0.69 5.48 -17.43 -0.10 0.60 16 20 N -0.92 -29.48 13.97 55.49 0.78 -28.70 16 21 Si 0.89 23.69 24.42 -169.99 -4.15 19.54 16 22 H -0.29 -7.38 6.99 56.52 0.39 -6.98 16 23 H -0.30 -8.09 7.11 56.52 0.40 -7.69 16 24 H -0.27 -7.00 6.37 56.52 0.36 -6.64 16 25 C 0.13 2.95 6.51 -3.07 -0.02 2.93 16 26 C 0.00 0.01 11.93 29.90 0.36 0.36 16 27 O -0.23 -2.32 10.20 -17.76 -0.18 -2.50 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.10 1.28 5.49 -51.93 -0.29 0.99 16 34 H 0.07 0.76 7.86 -51.93 -0.41 0.35 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.79 6.75 -51.93 -0.35 0.44 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.09 1.92 5.70 -51.93 -0.30 1.63 16 40 H 0.06 1.40 7.47 -51.93 -0.39 1.01 16 41 H 0.02 0.57 5.04 -51.93 -0.26 0.31 16 42 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 43 H 0.04 0.98 6.38 -51.93 -0.33 0.65 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.24 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 358.05 15.07 5.40 5.40 Total: -1.00 -35.95 358.05 -5.60 -41.55 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -6.56 Total: -2.92 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: 0.49 Total: 11.96 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -0.24 Total: -60.33 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.53 Total: -15.20 kcal Atomic # 14 Polarization: 23.69 SS G_CDS: -4.15 Total: 19.54 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.95 -5.60 -41.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033884322.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.908 kcal (2) G-P(sol) polarization free energy of solvation -35.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds