Wall clock time and date at job start Tue Mar 31 2020 14:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42900 * 109.46902 * 2 1 4 4 C 1.35349 * 117.00127 * 180.02562 * 3 2 1 5 5 N 1.30548 * 125.44814 * 179.97438 * 4 3 2 6 6 C 1.36326 * 108.38511 * 179.97438 * 5 4 3 7 7 C 1.47372 * 126.41347 * 179.97438 * 6 5 4 8 8 O 1.21623 * 119.99802 * 181.92820 * 7 6 5 9 9 N 1.34776 * 119.99983 * 1.92145 * 7 6 5 10 10 C 1.46501 * 119.99826 * 3.18658 * 9 7 6 11 11 C 1.52995 * 109.47134 * 273.97280 * 10 9 7 12 12 C 1.46497 * 119.99986 * 183.18362 * 9 7 6 13 13 H 1.09001 * 110.63944 * 181.69445 * 12 9 7 14 14 C 1.55157 * 110.71991 * 305.02613 * 12 9 7 15 15 C 1.54916 * 101.58180 * 153.86472 * 14 12 9 16 16 N 1.47422 * 104.83028 * 322.99401 * 15 14 12 17 17 C 1.36946 * 125.64765 * 204.16461 * 16 15 14 18 18 H 1.07994 * 119.99743 * 150.14604 * 17 16 15 19 19 C 1.38810 * 119.99539 * 330.14808 * 17 16 15 20 20 N 1.31621 * 119.99729 * 165.75630 * 19 17 16 21 21 Si 1.86796 * 120.00270 * 345.75266 * 19 17 16 22 22 H 1.48498 * 109.47082 * 87.14653 * 21 19 17 23 23 H 1.48501 * 109.47184 * 207.14520 * 21 19 17 24 24 H 1.48496 * 109.47277 * 327.14609 * 21 19 17 25 25 C 1.47021 * 108.70623 * 24.12448 * 16 15 14 26 26 C 1.35915 * 107.17557 * 0.22662 * 6 5 4 27 27 O 1.34206 * 125.44714 * 359.97438 * 4 3 2 28 28 H 1.08996 * 109.47206 * 60.00544 * 1 2 3 29 29 H 1.09005 * 109.46693 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47206 * 299.99852 * 1 2 3 31 31 H 1.08997 * 109.47206 * 240.00148 * 2 1 3 32 32 H 1.08996 * 109.47206 * 119.99455 * 2 1 3 33 33 H 1.08998 * 109.47354 * 33.97928 * 10 9 7 34 34 H 1.09004 * 109.46794 * 153.97515 * 10 9 7 35 35 H 1.08994 * 109.47229 * 300.00138 * 11 10 9 36 36 H 1.08997 * 109.46851 * 60.00701 * 11 10 9 37 37 H 1.08999 * 109.46998 * 179.97438 * 11 10 9 38 38 H 1.08996 * 111.00815 * 271.93656 * 14 12 9 39 39 H 1.09000 * 111.00462 * 35.79242 * 14 12 9 40 40 H 1.09000 * 110.36879 * 204.15592 * 15 14 12 41 41 H 1.08999 * 110.36864 * 81.82908 * 15 14 12 42 42 H 0.97001 * 120.00148 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.88464 * 239.52729 * 25 16 15 44 44 H 1.09002 * 109.88156 * 118.35655 * 25 16 15 45 45 H 1.07995 * 126.45929 * 179.76797 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3481 1.5247 -0.0005 5 7 3.9593 2.6783 -0.0011 6 6 5.3038 2.4526 -0.0009 7 6 6.3629 3.4773 -0.0020 8 8 7.5319 3.1436 -0.0371 9 7 6.0360 4.7843 0.0360 10 6 4.6314 5.1851 0.1486 11 6 4.0040 5.2423 -1.2456 12 6 7.0853 5.8041 -0.0354 13 1 6.6556 6.8032 0.0377 14 6 8.1479 5.5769 1.0721 15 6 9.4013 6.2316 0.4395 16 7 9.3115 5.9092 -0.9962 17 6 10.3652 5.8543 -1.8693 18 1 10.3297 5.1861 -2.7169 19 6 11.4787 6.6574 -1.6645 20 7 12.5940 6.4156 -2.3203 21 14 11.3942 8.0814 -0.4585 22 1 11.7271 7.5959 0.9048 23 1 12.3658 9.1297 -0.8616 24 1 10.0227 8.6507 -0.4601 25 6 7.9037 5.6555 -1.3353 26 6 5.4846 1.1055 -0.0054 27 8 4.2631 0.5429 -0.0006 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 4.0943 4.4593 0.7593 34 1 4.5705 6.1683 0.6151 35 1 4.5410 5.9680 -1.8562 36 1 4.0649 4.2590 -1.7120 37 1 2.9588 5.5400 -1.1617 38 1 7.8655 6.0844 1.9945 39 1 8.3089 4.5131 1.2468 40 1 10.3087 5.8060 0.8679 41 1 9.3811 7.3113 0.5878 42 1 13.3720 6.9771 -2.1775 43 1 7.7935 4.6451 -1.7292 44 1 7.5632 6.3823 -2.0728 45 1 6.4308 0.5850 -0.0100 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033884322.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:02 Heat of formation + Delta-G solvation = -16.300239 kcal Electronic energy + Delta-G solvation = -28311.609013 eV Core-core repulsion = 24332.674588 eV Total energy + Delta-G solvation = -3978.934425 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.54976 -41.37443 -39.94369 -38.70068 -36.99529 -35.88917 -34.40021 -32.85890 -32.02688 -30.86008 -30.47617 -29.35146 -26.62784 -25.30113 -24.58747 -23.90177 -23.45651 -22.69849 -22.05512 -20.78036 -19.36021 -18.98753 -18.62350 -18.01263 -17.52899 -17.28849 -17.10003 -16.60323 -16.19782 -16.00804 -15.80453 -15.42420 -14.97617 -14.85292 -14.66425 -14.32163 -14.04725 -13.90036 -13.79663 -13.61201 -13.55435 -13.09496 -12.89012 -12.71502 -12.66567 -12.60625 -12.56383 -12.34268 -12.05981 -12.01211 -11.88735 -11.72589 -11.53084 -11.23371 -10.82773 -10.77168 -9.86142 -9.55566 -8.87909 -8.18818 -5.56650 0.03244 0.86115 0.94369 1.32694 1.39154 1.50413 1.62453 1.92183 2.19919 2.42438 3.07032 3.16846 3.42011 3.73631 3.77244 3.84193 3.93991 3.97765 4.01972 4.12652 4.27866 4.28200 4.39443 4.39761 4.52180 4.56212 4.58978 4.71086 4.80249 4.81870 4.88824 4.89437 4.97342 5.01603 5.10907 5.17853 5.22297 5.29369 5.46569 5.71228 5.73418 5.77376 6.10947 6.29298 6.50384 6.77791 7.09195 7.51522 8.13231 9.02113 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.030030 B = 0.002908 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.169285 B = 9627.511173 C = 9997.522579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.041 3.959 3 O -0.253 6.253 4 C 0.380 3.620 5 N -0.459 5.459 6 C -0.067 4.067 7 C 0.591 3.409 8 O -0.551 6.551 9 N -0.585 5.585 10 C 0.104 3.896 11 C -0.148 4.148 12 C 0.148 3.852 13 H 0.129 0.871 14 C -0.133 4.133 15 C 0.108 3.892 16 N -0.620 5.620 17 C -0.238 4.238 18 H 0.038 0.962 19 C -0.036 4.036 20 N -0.963 5.963 21 Si 0.963 3.037 22 H -0.272 1.272 23 H -0.304 1.304 24 H -0.252 1.252 25 C 0.131 3.869 26 C 0.021 3.979 27 O -0.218 6.218 28 H 0.068 0.932 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.042 0.958 36 H 0.039 0.961 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.034 0.966 41 H 0.037 0.963 42 H 0.264 0.736 43 H 0.017 0.983 44 H 0.030 0.970 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.691 -11.498 9.995 33.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.033 4.033 3 O -0.161 6.161 4 C 0.134 3.866 5 N -0.206 5.206 6 C -0.185 4.185 7 C 0.379 3.621 8 O -0.429 6.429 9 N -0.315 5.315 10 C -0.017 4.017 11 C -0.207 4.207 12 C 0.044 3.956 13 H 0.147 0.853 14 C -0.172 4.172 15 C -0.017 4.017 16 N -0.347 5.347 17 C -0.367 4.367 18 H 0.056 0.944 19 C -0.231 4.231 20 N -0.609 5.609 21 Si 0.790 3.210 22 H -0.198 1.198 23 H -0.232 1.232 24 H -0.177 1.177 25 C 0.005 3.995 26 C -0.052 4.052 27 O -0.109 6.109 28 H 0.087 0.913 29 H 0.127 0.873 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.125 0.875 34 H 0.114 0.886 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.121 0.879 39 H 0.095 0.905 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.035 0.965 44 H 0.048 0.952 45 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -29.477 -10.982 9.887 32.974 hybrid contribution 1.127 -0.392 -0.234 1.216 sum -28.350 -11.374 9.653 32.035 Atomic orbital electron populations 1.21851 0.89696 1.04992 1.03942 1.23412 0.97982 0.77946 1.03942 1.86409 1.07813 1.33010 1.88899 1.23692 0.84127 0.81653 0.97130 1.71360 1.03447 1.21084 1.24678 1.21486 0.90208 0.94214 1.12572 1.17096 0.86174 0.82295 0.76583 1.90910 1.19360 1.81632 1.51004 1.47852 1.08679 1.04161 1.70853 1.22085 0.78137 1.02608 0.98915 1.21970 1.01250 1.00796 0.96638 1.22090 0.87330 0.91969 0.94230 0.85290 1.23109 0.93731 1.02478 0.97898 1.22082 0.97835 0.97297 0.84491 1.44573 1.02513 1.83125 1.04520 1.18439 0.94911 1.16998 1.06306 0.94372 1.26019 0.95342 1.00862 1.00842 1.69932 1.02352 1.41465 1.47133 0.85668 0.77493 0.79257 0.78550 1.19772 1.23198 1.17702 1.21661 0.84121 0.97597 0.96077 1.25375 0.86520 0.92382 1.00923 1.84414 1.15929 1.38877 1.71664 0.91310 0.87282 0.91090 0.90110 0.89799 0.87501 0.88563 0.93922 0.94144 0.89962 0.87931 0.90522 0.94773 0.94564 0.92693 0.96495 0.95216 0.72866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 10.28 71.98 0.74 0.10 16 2 C 0.04 0.34 6.38 71.98 0.46 0.80 16 3 O -0.25 -4.09 10.19 -64.17 -0.65 -4.74 16 4 C 0.38 7.67 8.98 130.43 1.17 8.84 16 5 N -0.46 -10.93 6.42 -419.39 -2.69 -13.63 16 6 C -0.07 -1.78 6.45 40.31 0.26 -1.52 16 7 C 0.59 19.46 6.74 86.65 0.58 20.04 16 8 O -0.55 -22.61 13.25 -4.10 -0.05 -22.66 16 9 N -0.58 -17.25 2.55 -795.15 -2.02 -19.28 16 10 C 0.10 2.28 5.68 86.38 0.49 2.77 16 11 C -0.15 -3.26 9.68 71.98 0.70 -2.56 16 12 C 0.15 4.94 3.45 46.18 0.16 5.10 16 13 H 0.13 3.49 7.81 -2.39 -0.02 3.47 16 14 C -0.13 -4.77 6.39 31.99 0.20 -4.57 16 15 C 0.11 4.89 4.81 86.86 0.42 5.30 16 16 N -0.62 -32.97 3.08 -691.98 -2.13 -35.10 16 17 C -0.24 -15.02 10.58 84.03 0.89 -14.13 16 18 H 0.04 2.69 8.06 -2.91 -0.02 2.67 16 19 C -0.04 -2.28 5.48 84.86 0.46 -1.81 16 20 N -0.96 -64.14 13.97 21.65 0.30 -63.84 16 21 Si 0.96 48.99 24.42 68.60 1.68 50.66 16 22 H -0.27 -13.12 6.99 99.48 0.70 -12.43 16 23 H -0.30 -15.35 7.11 99.48 0.71 -14.64 16 24 H -0.25 -11.95 6.37 99.48 0.63 -11.31 16 25 C 0.13 5.85 6.51 86.73 0.56 6.42 16 26 C 0.02 0.43 11.93 67.28 0.80 1.24 16 27 O -0.22 -4.05 10.20 18.86 0.19 -3.86 16 28 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.11 0.01 8.14 -2.38 -0.02 0.00 16 30 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.11 2.37 5.49 -2.39 -0.01 2.35 16 34 H 0.10 1.64 7.86 -2.38 -0.02 1.62 16 35 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.04 1.04 6.75 -2.39 -0.02 1.02 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 39 H 0.08 3.07 5.70 -2.39 -0.01 3.06 16 40 H 0.03 1.68 7.47 -2.39 -0.02 1.66 16 41 H 0.04 1.59 5.04 -2.39 -0.01 1.58 16 42 H 0.26 16.52 8.31 -92.71 -0.77 15.75 16 43 H 0.02 0.84 6.38 -2.39 -0.02 0.82 16 44 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.26 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -81.90 358.05 3.44 -78.46 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 0.92 Total: 7.97 kcal Atomic # 6 Polarization: 18.11 SS G_CDS: 7.90 Total: 26.01 kcal Atomic # 7 Polarization: -125.30 SS G_CDS: -6.54 Total: -131.84 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.52 Total: -31.27 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 1.68 Total: 50.66 kcal Total: -81.90 3.44 -78.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033884322.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.158 kcal (2) G-P(sol) polarization free energy of solvation -81.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds