Wall clock time and date at job start Tue Mar 31 2020 14:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42890 * 109.47172 * 2 1 4 4 C 1.35733 * 117.00213 * 179.97438 * 3 2 1 5 5 C 1.41848 * 126.78590 * 179.97438 * 4 3 2 6 6 C 1.36672 * 103.80964 * 180.02562 * 5 4 3 7 7 C 1.47536 * 126.87947 * 180.02562 * 6 5 4 8 8 O 1.21588 * 119.99928 * 354.44031 * 7 6 5 9 9 N 1.34770 * 120.00177 * 174.44687 * 7 6 5 10 10 C 1.46503 * 120.00185 * 5.56444 * 9 7 6 11 11 C 1.52998 * 109.46818 * 83.91484 * 10 9 7 12 12 C 1.46503 * 120.00575 * 185.57327 * 9 7 6 13 13 H 1.08996 * 110.89262 * 190.10475 * 12 9 7 14 14 C 1.55157 * 111.00626 * 66.21565 * 12 9 7 15 15 C 1.54322 * 102.94511 * 277.43383 * 14 12 9 16 16 N 1.47020 * 107.27150 * 337.80755 * 15 14 12 17 17 C 1.36937 * 125.64932 * 178.98748 * 16 15 14 18 18 H 1.08002 * 120.00114 * 179.97438 * 17 16 15 19 19 C 1.38811 * 119.99905 * 359.97198 * 17 16 15 20 20 N 1.31623 * 120.00143 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00228 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46692 * 59.99695 * 21 19 17 23 23 H 1.48495 * 109.47560 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46858 * 300.00268 * 21 19 17 25 25 C 1.47426 * 108.70455 * 358.93743 * 16 15 14 26 26 O 1.34654 * 106.23854 * 0.02562 * 6 5 4 27 27 N 1.20876 * 111.63666 * 359.70508 * 26 6 5 28 28 H 1.09003 * 109.47434 * 60.00026 * 1 2 3 29 29 H 1.09008 * 109.47545 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47444 * 299.99563 * 1 2 3 31 31 H 1.08995 * 109.46940 * 120.00663 * 2 1 3 32 32 H 1.09003 * 109.46654 * 240.00291 * 2 1 3 33 33 H 1.07996 * 128.10018 * 359.97438 * 5 4 3 34 34 H 1.08991 * 109.47485 * 203.91920 * 10 9 7 35 35 H 1.09003 * 109.46805 * 323.92190 * 10 9 7 36 36 H 1.09000 * 109.47369 * 60.00184 * 11 10 9 37 37 H 1.09003 * 109.47629 * 180.02562 * 11 10 9 38 38 H 1.09005 * 109.47662 * 300.00464 * 11 10 9 39 39 H 1.09002 * 110.71613 * 35.79586 * 14 12 9 40 40 H 1.08995 * 110.72215 * 159.06926 * 14 12 9 41 41 H 1.09009 * 109.88121 * 97.22213 * 15 14 12 42 42 H 1.09000 * 109.88610 * 218.38532 * 15 14 12 43 43 H 0.97000 * 119.99892 * 179.97438 * 20 19 17 44 44 H 1.08997 * 110.36944 * 265.29219 * 25 16 15 45 45 H 1.08996 * 110.36606 * 142.96581 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3519 1.5251 0.0005 5 6 4.0452 2.7626 0.0001 6 6 5.3625 2.3986 0.0004 7 6 6.5303 3.3003 0.0007 8 8 6.3709 4.5014 -0.1013 9 7 7.7736 2.7928 0.1139 10 6 7.9752 1.3417 0.1139 11 6 8.0324 0.8348 -1.3286 12 6 8.9236 3.6920 0.2371 13 1 9.8594 3.1416 0.1405 14 6 8.8753 4.4766 1.5748 15 6 7.9212 5.6466 1.2551 16 7 7.9208 5.8231 -0.2045 17 6 7.1853 6.7481 -0.8963 18 1 7.2555 6.7983 -1.9729 19 6 6.3494 7.6214 -0.2139 20 7 6.2634 7.5599 1.0981 21 14 5.3455 8.8828 -1.1576 22 1 4.4394 8.1856 -2.1053 23 1 4.5400 9.6878 -0.2047 24 1 6.2589 9.7772 -1.9134 25 6 8.8442 4.8402 -0.7999 26 8 5.3812 1.0522 0.0003 27 7 4.2638 0.5910 0.0058 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 3.6294 3.7593 -0.0010 34 1 8.9112 1.1049 0.6196 35 1 7.1483 0.8600 0.6357 36 1 8.8593 1.3165 -1.8505 37 1 8.1820 -0.2449 -1.3287 38 1 7.0964 1.0716 -1.8344 39 1 8.4689 3.8544 2.3723 40 1 9.8652 4.8477 1.8402 41 1 6.9148 5.4091 1.6000 42 1 8.2758 6.5569 1.7385 43 1 5.6796 8.1704 1.5749 44 1 9.8278 5.2855 -0.9489 45 1 8.4469 4.4707 -1.7452 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033900188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:40 Heat of formation + Delta-G solvation = 58.480751 kcal Electronic energy + Delta-G solvation = -29370.535602 eV Core-core repulsion = 25394.843924 eV Total energy + Delta-G solvation = -3975.691678 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.03739 -41.32564 -40.09550 -37.92578 -36.82016 -34.53039 -34.17277 -32.76564 -32.12986 -31.44209 -30.43324 -28.83293 -26.52356 -25.61387 -24.50034 -24.39323 -23.51568 -22.23812 -21.75047 -20.77777 -19.14066 -18.88026 -18.33941 -18.01352 -17.46883 -17.04223 -16.90249 -16.48828 -16.10768 -15.76018 -15.57597 -15.39114 -14.96932 -14.51528 -14.31315 -14.09579 -13.66002 -13.55790 -13.54972 -13.47152 -13.38218 -12.98515 -12.79429 -12.72536 -12.64547 -12.33336 -12.17638 -12.15791 -12.05372 -11.98176 -11.62297 -11.54189 -11.34693 -10.89881 -10.61752 -10.46240 -10.38188 -9.44154 -8.30599 -7.60348 -4.83336 -0.21494 0.98167 1.45297 1.48358 1.53172 1.54054 1.56419 2.22804 2.29293 2.63062 3.00053 3.58277 3.58880 3.74212 3.88577 3.91166 3.96661 4.03974 4.13443 4.20545 4.24614 4.25677 4.43928 4.51305 4.56155 4.66686 4.77338 4.80030 4.82973 4.86843 4.97633 5.09784 5.11474 5.13047 5.15192 5.20086 5.45540 5.59014 5.85243 5.89669 5.91524 6.05050 6.44329 6.46871 6.93563 7.36108 7.41993 8.06886 8.69854 9.51164 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011359 B = 0.004951 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.370099 B = 5653.879710 C = 7517.462859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 O -0.295 6.295 4 C 0.209 3.791 5 C -0.187 4.187 6 C -0.036 4.036 7 C 0.541 3.459 8 O -0.424 6.424 9 N -0.593 5.593 10 C 0.099 3.901 11 C -0.161 4.161 12 C 0.148 3.852 13 H 0.147 0.853 14 C -0.147 4.147 15 C 0.197 3.803 16 N -0.582 5.582 17 C -0.190 4.190 18 H 0.063 0.937 19 C -0.063 4.063 20 N -0.948 5.948 21 Si 0.953 3.047 22 H -0.291 1.291 23 H -0.300 1.300 24 H -0.281 1.281 25 C 0.122 3.878 26 O 0.124 5.876 27 N -0.403 5.403 28 H 0.066 0.934 29 H 0.109 0.891 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.172 0.828 34 H 0.118 0.882 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.029 0.971 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.014 0.986 42 H -0.012 1.012 43 H 0.234 0.766 44 H 0.041 0.959 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.259 -21.214 -0.971 21.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.025 4.025 3 O -0.202 6.202 4 C 0.012 3.988 5 C -0.210 4.210 6 C -0.103 4.103 7 C 0.321 3.679 8 O -0.291 6.291 9 N -0.329 5.329 10 C -0.023 4.023 11 C -0.219 4.219 12 C 0.045 3.955 13 H 0.164 0.836 14 C -0.186 4.186 15 C 0.072 3.928 16 N -0.307 5.307 17 C -0.320 4.320 18 H 0.081 0.919 19 C -0.255 4.255 20 N -0.600 5.600 21 Si 0.785 3.215 22 H -0.218 1.218 23 H -0.226 1.226 24 H -0.207 1.207 25 C -0.005 4.005 26 O 0.061 5.939 27 N -0.130 5.130 28 H 0.085 0.915 29 H 0.127 0.873 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.190 0.810 34 H 0.136 0.864 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.048 0.952 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.032 0.968 42 H 0.006 0.994 43 H 0.043 0.957 44 H 0.059 0.941 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -0.270 -21.485 -1.000 21.510 hybrid contribution -1.407 1.812 -0.402 2.329 sum -1.677 -19.673 -1.402 19.794 Atomic orbital electron populations 1.21838 0.90131 1.04785 1.03579 1.23132 0.97502 0.79202 1.02666 1.86237 1.12470 1.32355 1.89146 1.21759 0.86260 0.90069 1.00686 1.22190 0.91251 0.99298 1.08277 1.24681 0.97017 0.83976 1.04580 1.17527 0.82455 0.86783 0.81088 1.91775 1.83294 1.11292 1.42758 1.47789 1.04289 1.07897 1.72878 1.21989 1.04446 0.77418 0.98406 1.22146 1.01234 1.02525 0.95982 1.22401 0.88568 0.90047 0.94530 0.83586 1.23270 1.00713 0.97319 0.97309 1.20807 0.95235 0.92643 0.84070 1.44301 1.47233 1.36831 1.02360 1.18993 1.16510 1.06453 0.90034 0.91940 1.25182 1.01935 1.02110 0.96278 1.70169 1.42927 1.40508 1.06365 0.85507 0.79060 0.79679 0.77273 1.21791 1.22649 1.20721 1.22025 0.93349 0.89808 0.95278 1.85101 1.21936 1.18382 1.68464 1.73841 0.90940 1.22334 1.25912 0.91512 0.87286 0.91494 0.91227 0.91263 0.81048 0.86374 0.90295 0.91860 0.89205 0.95216 0.90948 0.89162 0.96822 0.99387 0.95694 0.94106 0.95365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 10.28 71.98 0.74 -1.34 16 2 C 0.05 1.00 6.38 71.98 0.46 1.46 16 3 O -0.29 -8.55 10.21 -90.57 -0.92 -9.48 16 4 C 0.21 6.73 8.00 85.78 0.69 7.41 16 5 C -0.19 -6.78 10.97 22.80 0.25 -6.53 16 6 C -0.04 -1.25 6.75 24.36 0.16 -1.09 16 7 C 0.54 20.81 7.07 86.70 0.61 21.43 16 8 O -0.42 -21.18 8.91 -3.99 -0.04 -21.22 16 9 N -0.59 -17.42 2.57 -793.85 -2.04 -19.46 16 10 C 0.10 1.95 5.70 86.38 0.49 2.44 16 11 C -0.16 -2.93 9.84 71.98 0.71 -2.23 16 12 C 0.15 4.34 3.77 46.39 0.17 4.52 16 13 H 0.15 2.77 7.91 -2.39 -0.02 2.75 16 14 C -0.15 -5.03 6.52 31.78 0.21 -4.82 16 15 C 0.20 9.92 4.22 86.73 0.37 10.29 16 16 N -0.58 -30.08 1.73 -691.97 -1.20 -31.27 16 17 C -0.19 -11.12 8.73 84.03 0.73 -10.39 16 18 H 0.06 3.61 7.83 -2.91 -0.02 3.59 16 19 C -0.06 -3.82 5.49 84.86 0.47 -3.35 16 20 N -0.95 -60.31 10.31 21.65 0.22 -60.09 16 21 Si 0.95 49.42 29.55 68.60 2.03 51.45 16 22 H -0.29 -14.90 7.11 99.48 0.71 -14.20 16 23 H -0.30 -15.69 7.11 99.48 0.71 -14.99 16 24 H -0.28 -13.93 7.11 99.48 0.71 -13.23 16 25 C 0.12 4.76 6.17 86.86 0.54 5.30 16 26 O 0.12 3.63 7.05 65.72 0.46 4.09 16 27 N -0.40 -12.07 11.50 -172.03 -1.98 -14.05 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.17 6.67 8.06 -2.91 -0.02 6.65 16 34 H 0.12 1.51 7.92 -2.39 -0.02 1.49 16 35 H 0.08 1.65 5.27 -2.39 -0.01 1.64 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.03 0.69 7.38 -2.38 -0.02 0.67 16 39 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.01 0.80 5.87 -2.38 -0.01 0.79 16 42 H -0.01 -0.70 7.51 -2.39 -0.02 -0.71 16 43 H 0.23 14.76 8.31 -92.71 -0.77 13.99 16 44 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -77.33 358.65 4.12 -73.21 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: 0.99 Total: 3.72 kcal Atomic # 6 Polarization: 16.50 SS G_CDS: 6.60 Total: 23.10 kcal Atomic # 7 Polarization: -119.88 SS G_CDS: -4.99 Total: -124.87 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.50 Total: -26.60 kcal Atomic # 14 Polarization: 49.42 SS G_CDS: 2.03 Total: 51.45 kcal Total: -77.33 4.12 -73.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033900188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.691 kcal (2) G-P(sol) polarization free energy of solvation -77.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds