Wall clock time and date at job start Tue Mar 31 2020 14:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47307 * 2 1 4 4 C 1.34766 * 119.99903 * 84.05097 * 3 2 1 5 5 O 1.21502 * 119.99922 * 185.63653 * 4 3 2 6 6 C 1.48334 * 120.00315 * 5.63490 * 4 3 2 7 7 C 1.42276 * 126.93844 * 174.50007 * 6 4 3 8 8 C 1.35312 * 103.91610 * 179.97438 * 7 6 4 9 9 C 1.50705 * 126.66116 * 179.97438 * 8 7 6 10 10 O 1.42910 * 109.46922 * 90.02830 * 9 8 7 11 11 C 1.42899 * 113.99696 * 180.02562 * 10 9 8 12 12 O 1.34017 * 106.67570 * 0.02562 * 8 7 6 13 13 N 1.20907 * 111.83955 * 359.97438 * 12 8 7 14 14 C 1.46505 * 119.99786 * 264.05501 * 3 2 1 15 15 H 1.09004 * 110.88559 * 10.04788 * 14 3 2 16 16 C 1.55161 * 111.00086 * 246.17304 * 14 3 2 17 17 C 1.54320 * 102.93909 * 277.42733 * 16 14 3 18 18 N 1.47026 * 107.27495 * 337.80661 * 17 16 14 19 19 C 1.36931 * 125.64929 * 178.98554 * 18 17 16 20 20 H 1.08007 * 119.99962 * 179.97438 * 19 18 17 21 21 C 1.38807 * 120.00314 * 359.97438 * 19 18 17 22 22 N 1.31620 * 119.99991 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00262 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47461 * 89.99952 * 23 21 19 25 25 H 1.48502 * 109.47136 * 210.00124 * 23 21 19 26 26 H 1.48498 * 109.46939 * 329.99746 * 23 21 19 27 27 C 1.47428 * 108.69993 * 358.94405 * 18 17 16 28 28 H 1.09004 * 109.47128 * 59.99941 * 1 2 3 29 29 H 1.09000 * 109.47568 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47290 * 299.99990 * 1 2 3 31 31 H 1.08999 * 109.46862 * 240.00181 * 2 1 3 32 32 H 1.08996 * 109.47302 * 120.00283 * 2 1 3 33 33 H 1.07998 * 128.03852 * 359.97438 * 7 6 4 34 34 H 1.08997 * 109.47425 * 210.02196 * 9 8 7 35 35 H 1.08997 * 109.47189 * 330.02760 * 9 8 7 36 36 H 1.08999 * 109.46700 * 179.97438 * 11 10 9 37 37 H 1.08993 * 109.46945 * 299.99485 * 11 10 9 38 38 H 1.08995 * 109.47416 * 60.00228 * 11 10 9 39 39 H 1.09001 * 110.72068 * 35.78707 * 16 14 3 40 40 H 1.08991 * 110.71865 * 159.06711 * 16 14 3 41 41 H 1.09006 * 109.88626 * 97.22680 * 17 16 14 42 42 H 1.09002 * 109.88479 * 218.39136 * 17 16 14 43 43 H 0.97003 * 120.00385 * 180.02562 * 22 21 19 44 44 H 1.09003 * 110.36196 * 265.28485 * 27 18 17 45 45 H 1.09002 * 110.36567 * 142.96666 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1289 2.0568 1.1608 5 8 2.4353 3.2325 1.1527 6 6 1.8765 1.3652 2.4485 7 6 2.0549 1.8991 3.7552 8 6 1.6917 0.8846 4.5736 9 6 1.6872 0.9018 6.0806 10 8 0.4148 1.3542 6.5480 11 6 0.3043 1.4084 7.9717 12 8 1.3380 -0.1388 3.7840 13 7 1.4444 0.1396 2.6122 14 6 2.3864 2.0280 -1.2620 15 1 2.0769 1.4224 -2.1138 16 6 3.9091 2.3220 -1.3127 17 6 4.0314 3.6470 -0.5311 18 7 2.7133 4.2974 -0.5653 19 6 2.3953 5.4884 0.0309 20 1 1.3938 5.8840 -0.0532 21 6 3.3600 6.1873 0.7435 22 7 4.5805 5.7055 0.8456 23 14 2.9260 7.8116 1.5574 24 1 2.4440 7.5598 2.9393 25 1 4.1301 8.6795 1.6036 26 1 1.8588 8.4871 0.7764 27 6 1.7909 3.4554 -1.3487 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.3998 2.8849 4.0299 34 1 1.8754 -0.1041 6.4560 35 1 2.4662 1.5749 6.4386 36 1 -0.6898 1.7615 8.2457 37 1 0.4640 0.4133 8.3866 38 1 1.0545 2.0923 8.3686 39 1 4.4716 1.5296 -0.8189 40 1 4.2431 2.4495 -2.3423 41 1 4.3177 3.4436 0.5009 42 1 4.7741 4.2894 -1.0042 43 1 5.2546 6.1937 1.3438 44 1 1.7590 3.7908 -2.3854 45 1 0.7929 3.4773 -0.9111 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033981333.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:47 Heat of formation + Delta-G solvation = 80.596995 kcal Electronic energy + Delta-G solvation = -29318.900464 eV Core-core repulsion = 25344.167818 eV Total energy + Delta-G solvation = -3974.732646 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.83731 -39.73423 -38.17327 -36.21438 -35.31750 -33.58475 -32.59663 -31.95497 -29.91072 -28.75392 -27.91041 -27.17207 -25.79174 -24.85280 -23.91590 -22.94184 -22.15979 -20.59310 -19.80763 -18.30397 -17.73073 -17.21068 -16.78153 -16.45731 -16.29388 -16.07928 -15.71700 -14.84174 -14.61213 -14.39795 -13.97316 -13.68581 -13.56685 -13.48112 -13.09717 -13.02113 -12.39949 -12.15054 -11.97600 -11.83926 -11.77224 -11.65292 -11.48082 -11.45149 -10.83324 -10.69230 -10.66606 -10.61463 -10.10689 -10.05215 -9.93868 -9.85493 -9.64277 -9.44666 -9.38814 -8.86481 -8.37229 -7.81497 -6.23901 -5.38697 -2.63375 1.30044 1.94529 2.90205 3.35266 3.55337 3.60148 3.61126 3.80827 3.92669 4.29153 4.52056 4.75040 4.79984 4.98882 5.05120 5.11123 5.17590 5.27502 5.35364 5.40193 5.41436 5.55117 5.61518 5.65583 5.69322 5.74435 5.90651 5.93813 6.05590 6.12435 6.16702 6.30867 6.43803 6.56889 6.65620 6.68024 6.74048 6.80104 7.33273 7.79926 7.90760 7.96496 8.12655 8.23668 8.57298 9.05291 9.53592 10.15601 10.82045 11.74737 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010282 B = 0.005350 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.606869 B = 5232.027837 C = 7308.026812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.102 3.898 3 N -0.601 5.601 4 C 0.535 3.465 5 O -0.381 6.381 6 C -0.005 4.005 7 C -0.149 4.149 8 C -0.053 4.053 9 C 0.148 3.852 10 O -0.385 6.385 11 C 0.032 3.968 12 O 0.109 5.891 13 N -0.332 5.332 14 C 0.134 3.866 15 H 0.084 0.916 16 C -0.161 4.161 17 C 0.190 3.810 18 N -0.567 5.567 19 C -0.187 4.187 20 H 0.067 0.933 21 C -0.008 4.008 22 N -0.923 5.923 23 Si 0.899 3.101 24 H -0.294 1.294 25 H -0.295 1.295 26 H -0.286 1.286 27 C 0.130 3.870 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.181 0.819 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.045 0.955 38 H 0.046 0.954 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.032 0.968 43 H 0.244 0.756 44 H 0.024 0.976 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.512 -15.498 7.701 18.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.022 4.022 3 N -0.338 5.338 4 C 0.316 3.684 5 O -0.242 6.242 6 C -0.164 4.164 7 C -0.171 4.171 8 C -0.116 4.116 9 C 0.071 3.929 10 O -0.304 6.304 11 C -0.065 4.065 12 O 0.037 5.963 13 N -0.037 5.037 14 C 0.030 3.970 15 H 0.102 0.898 16 C -0.201 4.201 17 C 0.065 3.935 18 N -0.292 5.292 19 C -0.316 4.316 20 H 0.085 0.915 21 C -0.203 4.203 22 N -0.573 5.573 23 Si 0.731 3.269 24 H -0.222 1.222 25 H -0.222 1.222 26 H -0.212 1.212 27 C 0.002 3.998 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.198 0.802 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.042 0.958 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.690 -15.478 6.830 17.850 hybrid contribution 0.107 1.296 1.132 1.724 sum -5.582 -14.183 7.963 17.196 Atomic orbital electron populations 1.22095 0.96412 1.01343 1.01881 1.21729 0.94298 0.83096 1.03065 1.47617 1.66885 1.13519 1.05817 1.17486 0.81956 0.87593 0.81362 1.91702 1.38122 1.10677 1.83700 1.24237 1.03102 0.91061 0.98013 1.22571 1.03201 1.01300 0.90072 1.23767 1.04501 0.88551 0.94810 1.20600 0.87158 1.00750 0.84374 1.87998 1.32712 1.87681 1.21986 1.22798 1.02895 1.00533 0.80237 1.84743 1.62707 1.37106 1.11757 1.74270 1.16980 1.16687 0.95812 1.22330 0.95910 0.94779 0.83984 0.89760 1.23409 0.94651 1.01127 1.00877 1.21104 0.87636 0.87201 0.97524 1.44140 1.05916 1.20876 1.58309 1.18799 0.95213 0.93356 1.24259 0.91533 1.24545 0.96045 0.98455 1.01232 1.69950 1.02048 1.38539 1.46756 0.86296 0.76667 0.84246 0.79678 1.22226 1.22173 1.21207 1.21775 0.94347 0.88659 0.95002 0.92867 0.92221 0.92875 0.91213 0.89014 0.80179 0.90748 0.89503 0.89194 0.93686 0.93548 0.92443 0.91799 0.92749 0.94986 0.94590 0.95843 0.94675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.84 37.16 0.37 -1.75 16 2 C 0.10 1.45 5.70 -4.04 -0.02 1.42 16 3 N -0.60 -10.77 2.57 -164.59 -0.42 -11.20 16 4 C 0.54 11.20 7.10 -12.11 -0.09 11.11 16 5 O -0.38 -9.69 8.95 5.36 0.05 -9.64 16 6 C 0.00 -0.09 6.77 -82.53 -0.56 -0.64 16 7 C -0.15 -2.49 10.93 -39.07 -0.43 -2.92 16 8 C -0.05 -0.72 7.10 -35.35 -0.25 -0.98 16 9 C 0.15 1.46 6.50 36.01 0.23 1.70 16 10 O -0.38 -4.39 10.69 -35.23 -0.38 -4.77 16 11 C 0.03 0.23 11.01 101.05 1.11 1.34 16 12 O 0.11 1.57 11.18 17.24 0.19 1.76 16 13 N -0.33 -5.30 7.73 33.29 0.26 -5.04 16 14 C 0.13 2.44 3.77 -65.78 -0.25 2.19 16 15 H 0.08 1.25 7.91 -51.93 -0.41 0.84 16 16 C -0.16 -3.16 6.52 -24.90 -0.16 -3.32 16 17 C 0.19 4.85 4.22 -3.06 -0.01 4.83 16 18 N -0.57 -15.03 1.73 -170.07 -0.29 -15.32 16 19 C -0.19 -5.49 8.73 -15.06 -0.13 -5.62 16 20 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 21 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 22 N -0.92 -28.36 10.31 55.49 0.57 -27.78 16 23 Si 0.90 23.45 29.55 -169.99 -5.02 18.43 16 24 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 25 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 C 0.13 2.83 6.17 -2.53 -0.02 2.82 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.82 7.37 -51.93 -0.38 0.44 16 31 H 0.07 0.84 7.93 -51.93 -0.41 0.43 16 32 H 0.09 1.35 5.22 -51.93 -0.27 1.08 16 33 H 0.18 3.07 8.06 -52.49 -0.42 2.64 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.05 1.57 5.87 -51.93 -0.30 1.26 16 42 H 0.03 0.91 7.50 -51.93 -0.39 0.52 16 43 H 0.24 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 359.42 15.07 5.42 5.42 Total: -1.00 -34.79 359.42 -6.72 -41.51 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -6.79 Total: -3.22 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -0.30 Total: 9.85 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: 0.11 Total: -59.34 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -0.14 Total: -12.65 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -5.02 Total: 18.43 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.79 -6.72 -41.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033981333.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.106 kcal (2) G-P(sol) polarization free energy of solvation -34.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds