Wall clock time and date at job start Tue Mar 31 2020 14:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47307 * 2 1 4 4 C 1.34766 * 119.99903 * 84.05097 * 3 2 1 5 5 O 1.21502 * 119.99922 * 185.63653 * 4 3 2 6 6 C 1.48334 * 120.00315 * 5.63490 * 4 3 2 7 7 C 1.42276 * 126.93844 * 174.50007 * 6 4 3 8 8 C 1.35312 * 103.91610 * 179.97438 * 7 6 4 9 9 C 1.50705 * 126.66116 * 179.97438 * 8 7 6 10 10 O 1.42910 * 109.46922 * 90.02830 * 9 8 7 11 11 C 1.42899 * 113.99696 * 180.02562 * 10 9 8 12 12 O 1.34017 * 106.67570 * 0.02562 * 8 7 6 13 13 N 1.20907 * 111.83955 * 359.97438 * 12 8 7 14 14 C 1.46505 * 119.99786 * 264.05501 * 3 2 1 15 15 H 1.09004 * 110.88559 * 10.04788 * 14 3 2 16 16 C 1.55161 * 111.00086 * 246.17304 * 14 3 2 17 17 C 1.54320 * 102.93909 * 277.42733 * 16 14 3 18 18 N 1.47026 * 107.27495 * 337.80661 * 17 16 14 19 19 C 1.36931 * 125.64929 * 178.98554 * 18 17 16 20 20 H 1.08007 * 119.99962 * 179.97438 * 19 18 17 21 21 C 1.38807 * 120.00314 * 359.97438 * 19 18 17 22 22 N 1.31620 * 119.99991 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00262 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47461 * 89.99952 * 23 21 19 25 25 H 1.48502 * 109.47136 * 210.00124 * 23 21 19 26 26 H 1.48498 * 109.46939 * 329.99746 * 23 21 19 27 27 C 1.47428 * 108.69993 * 358.94405 * 18 17 16 28 28 H 1.09004 * 109.47128 * 59.99941 * 1 2 3 29 29 H 1.09000 * 109.47568 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47290 * 299.99990 * 1 2 3 31 31 H 1.08999 * 109.46862 * 240.00181 * 2 1 3 32 32 H 1.08996 * 109.47302 * 120.00283 * 2 1 3 33 33 H 1.07998 * 128.03852 * 359.97438 * 7 6 4 34 34 H 1.08997 * 109.47425 * 210.02196 * 9 8 7 35 35 H 1.08997 * 109.47189 * 330.02760 * 9 8 7 36 36 H 1.08999 * 109.46700 * 179.97438 * 11 10 9 37 37 H 1.08993 * 109.46945 * 299.99485 * 11 10 9 38 38 H 1.08995 * 109.47416 * 60.00228 * 11 10 9 39 39 H 1.09001 * 110.72068 * 35.78707 * 16 14 3 40 40 H 1.08991 * 110.71865 * 159.06711 * 16 14 3 41 41 H 1.09006 * 109.88626 * 97.22680 * 17 16 14 42 42 H 1.09002 * 109.88479 * 218.39136 * 17 16 14 43 43 H 0.97003 * 120.00385 * 180.02562 * 22 21 19 44 44 H 1.09003 * 110.36196 * 265.28485 * 27 18 17 45 45 H 1.09002 * 110.36567 * 142.96666 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1289 2.0568 1.1608 5 8 2.4353 3.2325 1.1527 6 6 1.8765 1.3652 2.4485 7 6 2.0549 1.8991 3.7552 8 6 1.6917 0.8846 4.5736 9 6 1.6872 0.9018 6.0806 10 8 0.4148 1.3542 6.5480 11 6 0.3043 1.4084 7.9717 12 8 1.3380 -0.1388 3.7840 13 7 1.4444 0.1396 2.6122 14 6 2.3864 2.0280 -1.2620 15 1 2.0769 1.4224 -2.1138 16 6 3.9091 2.3220 -1.3127 17 6 4.0314 3.6470 -0.5311 18 7 2.7133 4.2974 -0.5653 19 6 2.3953 5.4884 0.0309 20 1 1.3938 5.8840 -0.0532 21 6 3.3600 6.1873 0.7435 22 7 4.5805 5.7055 0.8456 23 14 2.9260 7.8116 1.5574 24 1 2.4440 7.5598 2.9393 25 1 4.1301 8.6795 1.6036 26 1 1.8588 8.4871 0.7764 27 6 1.7909 3.4554 -1.3487 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.3998 2.8849 4.0299 34 1 1.8754 -0.1041 6.4560 35 1 2.4662 1.5749 6.4386 36 1 -0.6898 1.7615 8.2457 37 1 0.4640 0.4133 8.3866 38 1 1.0545 2.0923 8.3686 39 1 4.4716 1.5296 -0.8189 40 1 4.2431 2.4495 -2.3423 41 1 4.3177 3.4436 0.5009 42 1 4.7741 4.2894 -1.0042 43 1 5.2546 6.1937 1.3438 44 1 1.7590 3.7908 -2.3854 45 1 0.7929 3.4773 -0.9111 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033981333.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:47 Heat of formation + Delta-G solvation = 57.712687 kcal Electronic energy + Delta-G solvation = -29319.892802 eV Core-core repulsion = 25344.167818 eV Total energy + Delta-G solvation = -3975.724984 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.11198 -41.31535 -38.93524 -37.96230 -36.81667 -34.95947 -34.17238 -33.47445 -31.49951 -30.48840 -28.93699 -28.69366 -26.65882 -26.50479 -25.65565 -24.17363 -23.41957 -22.08346 -21.76889 -19.64527 -18.93729 -18.77929 -18.39835 -17.89720 -17.24157 -17.17332 -16.73135 -16.50711 -16.29164 -15.94530 -15.62087 -15.42920 -14.79873 -14.77728 -14.48563 -13.87333 -13.69249 -13.62130 -13.54719 -13.43117 -13.17993 -12.86066 -12.75200 -12.71381 -12.64489 -12.40891 -12.24120 -12.12276 -11.98318 -11.68478 -11.52995 -11.43334 -11.29142 -10.73711 -10.65138 -10.58194 -10.47855 -9.43110 -8.33162 -7.63200 -4.86700 0.08486 0.61048 1.42346 1.45068 1.51989 1.78958 2.00083 2.39072 2.60196 2.93442 2.99927 3.49580 3.54819 3.79606 3.88646 3.92302 4.01314 4.07905 4.16959 4.22427 4.35237 4.41120 4.46237 4.50657 4.55261 4.59803 4.63941 4.72496 4.78408 4.80664 4.90571 4.91230 5.00793 5.05321 5.07982 5.12513 5.35695 5.53568 5.80850 5.90289 6.00373 6.08113 6.40784 6.52328 6.97009 7.32464 7.51654 8.02400 8.66699 9.48903 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010282 B = 0.005350 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.606869 B = 5232.027837 C = 7308.026812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.099 3.901 3 N -0.597 5.597 4 C 0.530 3.470 5 O -0.442 6.442 6 C -0.032 4.032 7 C -0.182 4.182 8 C -0.024 4.024 9 C 0.147 3.853 10 O -0.417 6.417 11 C 0.026 3.974 12 O 0.125 5.875 13 N -0.321 5.321 14 C 0.146 3.854 15 H 0.138 0.862 16 C -0.146 4.146 17 C 0.202 3.798 18 N -0.581 5.581 19 C -0.190 4.190 20 H 0.060 0.940 21 C -0.064 4.064 22 N -0.949 5.949 23 Si 0.957 3.043 24 H -0.297 1.297 25 H -0.296 1.296 26 H -0.275 1.275 27 C 0.124 3.876 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.024 0.976 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.165 0.835 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.013 0.987 42 H -0.011 1.011 43 H 0.235 0.765 44 H 0.040 0.960 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.728 -18.315 7.712 20.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 N -0.333 5.333 4 C 0.312 3.688 5 O -0.308 6.308 6 C -0.190 4.190 7 C -0.205 4.205 8 C -0.087 4.087 9 C 0.070 3.930 10 O -0.337 6.337 11 C -0.070 4.070 12 O 0.050 5.950 13 N -0.024 5.024 14 C 0.042 3.958 15 H 0.156 0.844 16 C -0.185 4.185 17 C 0.077 3.923 18 N -0.305 5.305 19 C -0.320 4.320 20 H 0.078 0.922 21 C -0.256 4.256 22 N -0.601 5.601 23 Si 0.788 3.212 24 H -0.225 1.225 25 H -0.223 1.223 26 H -0.200 1.200 27 C -0.002 4.002 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.044 0.956 31 H 0.123 0.877 32 H 0.105 0.895 33 H 0.183 0.817 34 H 0.128 0.872 35 H 0.122 0.878 36 H 0.113 0.887 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.108 0.892 41 H 0.031 0.969 42 H 0.007 0.993 43 H 0.044 0.956 44 H 0.058 0.942 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -6.950 -18.352 6.793 20.766 hybrid contribution 0.384 2.056 1.214 2.419 sum -6.565 -16.296 8.007 19.307 Atomic orbital electron populations 1.22030 0.95559 1.02733 1.00662 1.21985 0.94878 0.80874 1.04583 1.47762 1.65826 1.14795 1.04903 1.17885 0.80830 0.87295 0.82770 1.91669 1.41069 1.13145 1.84879 1.23982 1.05281 0.92187 0.97542 1.22545 1.05553 1.01846 0.90532 1.24303 1.01382 0.86753 0.96283 1.20909 0.87339 1.03314 0.81429 1.87935 1.33214 1.88134 1.24452 1.23016 1.03612 1.02202 0.78142 1.84723 1.61728 1.37104 1.11457 1.74249 1.16247 1.15366 0.96541 1.22361 0.94201 0.93531 0.85737 0.84426 1.23253 0.96216 0.97732 1.01319 1.20755 0.86432 0.89340 0.95764 1.44278 1.07247 1.20725 1.58274 1.19022 0.94717 0.94494 1.23812 0.92240 1.25216 0.96177 1.01658 1.02510 1.70189 1.02707 1.39508 1.47671 0.85368 0.76459 0.80857 0.78518 1.22518 1.22269 1.20008 1.21971 0.93048 0.90530 0.94656 0.92514 0.89475 0.95648 0.87684 0.89457 0.81739 0.87192 0.87807 0.88722 0.91497 0.92601 0.91356 0.89174 0.96904 0.99253 0.95587 0.94197 0.96049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.84 71.98 0.71 -2.90 16 2 C 0.10 2.50 5.70 86.38 0.49 2.99 16 3 N -0.60 -20.55 2.57 -792.95 -2.04 -22.59 16 4 C 0.53 22.70 7.10 86.93 0.62 23.32 16 5 O -0.44 -23.65 8.95 -3.72 -0.03 -23.68 16 6 C -0.03 -1.18 6.77 42.96 0.29 -0.89 16 7 C -0.18 -6.29 10.93 22.60 0.25 -6.04 16 8 C -0.02 -0.63 7.10 25.01 0.18 -0.45 16 9 C 0.15 2.57 6.50 71.24 0.46 3.03 16 10 O -0.42 -8.79 10.69 -148.98 -1.59 -10.39 16 11 C 0.03 0.31 11.01 113.37 1.25 1.56 16 12 O 0.12 3.39 11.18 71.87 0.80 4.20 16 13 N -0.32 -9.94 7.73 -49.51 -0.38 -10.33 16 14 C 0.15 4.93 3.77 46.38 0.17 5.11 16 15 H 0.14 3.32 7.91 -2.39 -0.02 3.30 16 16 C -0.15 -5.52 6.52 31.78 0.21 -5.31 16 17 C 0.20 10.72 4.22 86.73 0.37 11.09 16 18 N -0.58 -31.75 1.73 -691.97 -1.20 -32.95 16 19 C -0.19 -11.61 8.73 84.03 0.73 -10.87 16 20 H 0.06 3.60 7.83 -2.91 -0.02 3.58 16 21 C -0.06 -3.95 5.49 84.86 0.47 -3.48 16 22 N -0.95 -61.53 10.31 21.65 0.22 -61.30 16 23 Si 0.96 50.17 29.55 68.60 2.03 52.20 16 24 H -0.30 -15.55 7.11 99.48 0.71 -14.84 16 25 H -0.30 -15.41 7.11 99.48 0.71 -14.70 16 26 H -0.27 -13.72 7.11 99.48 0.71 -13.02 16 27 C 0.12 5.37 6.17 86.85 0.54 5.90 16 28 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.02 0.73 7.37 -2.38 -0.02 0.72 16 31 H 0.10 1.98 7.93 -2.39 -0.02 1.96 16 32 H 0.09 2.35 5.22 -2.39 -0.01 2.34 16 33 H 0.17 6.11 8.06 -2.91 -0.02 6.09 16 34 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 41 H 0.01 0.79 5.87 -2.38 -0.01 0.78 16 42 H -0.01 -0.64 7.50 -2.39 -0.02 -0.66 16 43 H 0.23 14.94 8.31 -92.71 -0.77 14.17 16 44 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -82.14 359.42 5.53 -76.62 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: 0.99 Total: 5.17 kcal Atomic # 6 Polarization: 16.33 SS G_CDS: 6.73 Total: 23.05 kcal Atomic # 7 Polarization: -123.78 SS G_CDS: -3.40 Total: -127.17 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.82 Total: -29.87 kcal Atomic # 14 Polarization: 50.17 SS G_CDS: 2.03 Total: 52.20 kcal Total: -82.14 5.53 -76.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033981333.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.330 kcal (2) G-P(sol) polarization free energy of solvation -82.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds