Wall clock time and date at job start Tue Mar 31 2020 14:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47279 * 2 1 4 4 C 1.34787 * 119.99821 * 273.14206 * 3 2 1 5 5 O 1.21484 * 120.00160 * 184.99934 * 4 3 2 6 6 C 1.48333 * 119.99579 * 4.99871 * 4 3 2 7 7 C 1.42275 * 126.93737 * 185.61830 * 6 4 3 8 8 C 1.35310 * 103.92343 * 179.97438 * 7 6 4 9 9 C 1.50694 * 126.66552 * 179.97438 * 8 7 6 10 10 O 1.42902 * 109.47285 * 90.00328 * 9 8 7 11 11 C 1.42897 * 114.00285 * 179.97438 * 10 9 8 12 12 O 1.34018 * 106.66686 * 0.02562 * 8 7 6 13 13 N 1.20902 * 111.84500 * 359.70693 * 12 8 7 14 14 C 1.46490 * 120.00712 * 93.14186 * 3 2 1 15 15 H 1.09009 * 110.63992 * 1.68575 * 14 3 2 16 16 C 1.55153 * 110.72459 * 125.01971 * 14 3 2 17 17 C 1.54906 * 101.58384 * 153.86687 * 16 14 3 18 18 N 1.47425 * 104.83433 * 322.99568 * 17 16 14 19 19 C 1.36936 * 125.64940 * 204.16258 * 18 17 16 20 20 H 1.08006 * 119.99868 * 179.97438 * 19 18 17 21 21 C 1.38813 * 119.99933 * 359.95557 * 19 18 17 22 22 N 1.31613 * 120.00069 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99836 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47034 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47452 * 120.00154 * 23 21 19 26 26 H 1.48500 * 109.47335 * 240.00280 * 23 21 19 27 27 C 1.47017 * 108.70182 * 24.12627 * 18 17 16 28 28 H 1.08997 * 109.47107 * 60.00357 * 1 2 3 29 29 H 1.08997 * 109.47418 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47060 * 300.00249 * 1 2 3 31 31 H 1.08998 * 109.46740 * 239.99424 * 2 1 3 32 32 H 1.09001 * 109.46619 * 119.99662 * 2 1 3 33 33 H 1.08001 * 128.03447 * 359.97438 * 7 6 4 34 34 H 1.09008 * 109.47304 * 210.00370 * 9 8 7 35 35 H 1.09001 * 109.47576 * 330.00566 * 9 8 7 36 36 H 1.08999 * 109.47571 * 300.00370 * 11 10 9 37 37 H 1.09002 * 109.46880 * 60.00327 * 11 10 9 38 38 H 1.08999 * 109.47073 * 180.02562 * 11 10 9 39 39 H 1.09001 * 111.01025 * 271.94903 * 16 14 3 40 40 H 1.09001 * 111.00014 * 35.79995 * 16 14 3 41 41 H 1.08997 * 110.37197 * 204.15563 * 17 16 14 42 42 H 1.09009 * 110.36672 * 81.83341 * 17 16 14 43 43 H 0.97004 * 120.00057 * 180.02562 * 22 21 19 44 44 H 1.09007 * 109.88481 * 239.52464 * 27 18 17 45 45 H 1.09002 * 109.88520 * 118.35885 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1827 2.0378 -1.1656 5 8 2.6727 3.1494 -1.1726 6 6 1.7652 1.4031 -2.4396 7 6 1.9691 1.9087 -3.7537 8 6 1.4123 0.9702 -4.5537 9 6 1.3433 0.9967 -6.0588 10 8 2.5025 0.3601 -6.6001 11 6 2.5360 0.3306 -8.0284 12 8 0.9330 0.0130 -3.7473 13 7 1.1391 0.2615 -2.5822 14 6 2.3281 2.0487 1.2666 15 1 2.1696 1.3720 2.1064 16 6 3.7819 2.5908 1.2604 17 6 3.6811 3.7627 2.2684 18 7 2.3512 4.3524 2.0299 19 6 1.9858 5.6402 2.3184 20 1 0.9824 5.9777 2.1043 21 6 2.9049 6.5117 2.8865 22 7 4.1276 6.1005 3.1473 23 14 2.4062 8.2683 3.2807 24 1 0.9881 8.4789 2.8936 25 1 2.5639 8.5127 4.7369 26 1 3.2703 9.2098 2.5243 27 6 1.4824 3.3291 1.4303 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 2.4553 2.8280 -4.0450 34 1 0.4499 0.4678 -6.3910 35 1 1.3025 2.0303 -6.4026 36 1 1.6674 -0.2123 -8.4011 37 1 2.5198 1.3503 -8.4133 38 1 3.4461 -0.1690 -8.3603 39 1 4.4829 1.8332 1.6107 40 1 4.0604 2.9504 0.2699 41 1 4.4623 4.4978 2.0749 42 1 3.7536 3.3911 3.2907 43 1 4.7697 6.7094 3.5446 44 1 1.1294 3.6672 0.4559 45 1 0.6344 3.1320 2.0862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033981334.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:51 Heat of formation + Delta-G solvation = 41.771096 kcal Electronic energy + Delta-G solvation = -28147.947543 eV Core-core repulsion = 24171.531280 eV Total energy + Delta-G solvation = -3976.416263 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.22699 -40.01243 -38.39659 -36.82329 -35.59883 -34.08236 -32.92977 -32.13861 -30.25985 -28.91689 -28.15584 -27.29221 -26.02036 -25.16206 -23.99128 -23.24334 -22.40026 -20.84065 -20.07340 -18.71318 -18.09893 -17.63921 -17.00126 -16.69776 -16.62613 -16.29325 -15.83669 -15.07875 -14.83897 -14.61438 -14.31396 -14.00500 -13.81814 -13.69347 -13.33982 -13.24608 -12.65435 -12.54396 -12.23930 -12.01004 -11.97833 -11.73344 -11.63513 -11.44292 -11.09075 -10.93002 -10.83984 -10.76334 -10.53597 -10.42270 -10.26490 -10.00899 -9.82400 -9.71952 -9.51727 -9.26733 -8.54871 -8.33722 -6.70121 -5.53831 -2.94407 0.94318 1.49066 2.58031 2.95377 3.29417 3.46859 3.51763 3.54630 3.56074 3.85392 4.20879 4.56458 4.59261 4.69402 4.84417 4.90362 4.90635 4.96321 5.08404 5.23737 5.24801 5.27185 5.43268 5.50029 5.57229 5.64299 5.69443 5.77353 5.84122 5.89039 5.94854 6.27589 6.35404 6.52131 6.58620 6.61913 6.68727 6.81405 7.20016 7.50237 7.66183 7.74480 7.84688 7.97580 8.32022 8.48687 9.33296 9.94280 10.59440 11.50244 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017422 B = 0.003034 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.802779 B = 9227.553120 C =10100.021046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.103 3.897 3 N -0.590 5.590 4 C 0.587 3.413 5 O -0.489 6.489 6 C -0.018 4.018 7 C -0.152 4.152 8 C -0.045 4.045 9 C 0.146 3.854 10 O -0.385 6.385 11 C 0.031 3.969 12 O 0.121 5.879 13 N -0.318 5.318 14 C 0.135 3.865 15 H 0.092 0.908 16 C -0.160 4.160 17 C 0.158 3.842 18 N -0.596 5.596 19 C -0.214 4.214 20 H 0.076 0.924 21 C -0.014 4.014 22 N -0.923 5.923 23 Si 0.914 3.086 24 H -0.281 1.281 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.135 3.865 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.183 0.817 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.091 0.909 39 H 0.053 0.947 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.010 0.990 43 H 0.250 0.750 44 H 0.031 0.969 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.891 -16.399 -19.299 26.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.020 4.020 3 N -0.323 5.323 4 C 0.371 3.629 5 O -0.361 6.361 6 C -0.177 4.177 7 C -0.174 4.174 8 C -0.108 4.108 9 C 0.069 3.931 10 O -0.304 6.304 11 C -0.065 4.065 12 O 0.046 5.954 13 N -0.020 5.020 14 C 0.032 3.968 15 H 0.111 0.889 16 C -0.199 4.199 17 C 0.033 3.967 18 N -0.322 5.322 19 C -0.342 4.342 20 H 0.094 0.906 21 C -0.209 4.209 22 N -0.572 5.572 23 Si 0.745 3.255 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.218 1.218 27 C 0.008 3.992 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.200 0.800 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.105 0.895 41 H 0.125 0.875 42 H 0.028 0.972 43 H 0.061 0.939 44 H 0.049 0.951 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -5.825 -16.550 -18.162 25.252 hybrid contribution -0.217 1.477 -0.277 1.518 sum -6.043 -15.073 -18.438 24.570 Atomic orbital electron populations 1.22115 0.95619 1.01954 1.02256 1.21744 0.95011 0.82054 1.03154 1.47884 1.64635 1.14022 1.05794 1.16930 0.79674 0.85071 0.81247 1.90902 1.41638 1.18014 1.85500 1.23752 1.03271 0.93554 0.97142 1.22523 1.02419 1.02600 0.89892 1.23835 1.01998 0.90199 0.94810 1.20634 0.89842 0.99142 0.83491 1.87984 1.41786 1.79533 1.21099 1.22819 1.02712 1.01153 0.79797 1.84786 1.58487 1.40676 1.11500 1.74395 1.15263 1.15795 0.96586 1.22303 0.97559 0.94195 0.82718 0.88948 1.23521 0.93428 0.99451 1.03531 1.21853 0.90278 0.92086 0.92468 1.44316 1.08218 1.07683 1.72008 1.19100 0.96560 0.85416 1.33155 0.90644 1.24764 0.96012 0.98433 1.01651 1.69808 1.03921 1.34015 1.49475 0.85998 0.77460 0.84546 0.77516 1.20627 1.21862 1.21805 1.21462 0.92833 0.88295 0.96628 0.92399 0.91742 0.92469 0.89660 0.90315 0.80010 0.90467 0.89331 0.93552 0.93487 0.89060 0.92784 0.89497 0.87460 0.97186 0.93908 0.95074 0.96355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.70 37.16 0.36 -1.57 16 2 C 0.10 1.33 5.67 -4.05 -0.02 1.31 16 3 N -0.59 -9.87 2.54 -164.96 -0.42 -10.29 16 4 C 0.59 10.68 6.76 -12.10 -0.08 10.59 16 5 O -0.49 -10.82 13.34 5.38 0.07 -10.75 16 6 C -0.02 -0.28 6.68 -82.53 -0.55 -0.83 16 7 C -0.15 -1.90 10.93 -39.07 -0.43 -2.33 16 8 C -0.05 -0.46 7.10 -35.35 -0.25 -0.72 16 9 C 0.15 0.99 6.49 36.00 0.23 1.22 16 10 O -0.39 -3.24 10.69 -35.23 -0.38 -3.61 16 11 C 0.03 0.15 11.01 101.05 1.11 1.26 16 12 O 0.12 1.39 11.18 17.24 0.19 1.58 16 13 N -0.32 -4.19 7.17 33.29 0.24 -3.95 16 14 C 0.13 2.58 3.45 -66.10 -0.23 2.35 16 15 H 0.09 1.57 7.82 -51.92 -0.41 1.16 16 16 C -0.16 -3.42 6.39 -24.59 -0.16 -3.58 16 17 C 0.16 4.13 5.89 -2.53 -0.01 4.11 16 18 N -0.60 -16.46 3.39 -170.07 -0.58 -17.04 16 19 C -0.21 -6.34 10.27 -15.06 -0.15 -6.50 16 20 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 21 C -0.01 -0.40 5.49 -17.43 -0.10 -0.50 16 22 N -0.92 -28.16 10.09 55.49 0.56 -27.60 16 23 Si 0.91 23.11 29.55 -169.99 -5.02 18.09 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 27 C 0.13 3.12 6.52 -3.07 -0.02 3.10 16 28 H 0.06 0.76 6.60 -51.93 -0.34 0.42 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.09 5.75 -51.93 -0.30 0.79 16 32 H 0.08 0.88 7.87 -51.93 -0.41 0.47 16 33 H 0.18 2.08 8.06 -52.49 -0.42 1.65 16 34 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 35 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.15 8.14 -51.93 -0.42 -0.27 16 37 H 0.05 0.17 8.14 -51.93 -0.42 -0.26 16 38 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.09 2.03 5.64 -51.93 -0.29 1.73 16 41 H 0.11 3.16 5.87 -51.93 -0.30 2.85 16 42 H 0.01 0.27 8.14 -51.92 -0.42 -0.15 16 43 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.03 0.77 6.43 -51.93 -0.33 0.44 16 45 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 363.21 15.07 5.47 5.47 Total: -1.00 -35.26 363.21 -6.74 -42.00 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -6.58 Total: -1.84 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -0.30 Total: 7.94 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -0.20 Total: -58.88 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.11 Total: -12.78 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.26 -6.74 -42.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033981334.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.771 kcal (2) G-P(sol) polarization free energy of solvation -35.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds