Wall clock time and date at job start Tue Mar 31 2020 14:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47279 * 2 1 4 4 C 1.34787 * 119.99821 * 273.14206 * 3 2 1 5 5 O 1.21484 * 120.00160 * 184.99934 * 4 3 2 6 6 C 1.48333 * 119.99579 * 4.99871 * 4 3 2 7 7 C 1.42275 * 126.93737 * 185.61830 * 6 4 3 8 8 C 1.35310 * 103.92343 * 179.97438 * 7 6 4 9 9 C 1.50694 * 126.66552 * 179.97438 * 8 7 6 10 10 O 1.42902 * 109.47285 * 90.00328 * 9 8 7 11 11 C 1.42897 * 114.00285 * 179.97438 * 10 9 8 12 12 O 1.34018 * 106.66686 * 0.02562 * 8 7 6 13 13 N 1.20902 * 111.84500 * 359.70693 * 12 8 7 14 14 C 1.46490 * 120.00712 * 93.14186 * 3 2 1 15 15 H 1.09009 * 110.63992 * 1.68575 * 14 3 2 16 16 C 1.55153 * 110.72459 * 125.01971 * 14 3 2 17 17 C 1.54906 * 101.58384 * 153.86687 * 16 14 3 18 18 N 1.47425 * 104.83433 * 322.99568 * 17 16 14 19 19 C 1.36936 * 125.64940 * 204.16258 * 18 17 16 20 20 H 1.08006 * 119.99868 * 179.97438 * 19 18 17 21 21 C 1.38813 * 119.99933 * 359.95557 * 19 18 17 22 22 N 1.31613 * 120.00069 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99836 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47034 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47452 * 120.00154 * 23 21 19 26 26 H 1.48500 * 109.47335 * 240.00280 * 23 21 19 27 27 C 1.47017 * 108.70182 * 24.12627 * 18 17 16 28 28 H 1.08997 * 109.47107 * 60.00357 * 1 2 3 29 29 H 1.08997 * 109.47418 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47060 * 300.00249 * 1 2 3 31 31 H 1.08998 * 109.46740 * 239.99424 * 2 1 3 32 32 H 1.09001 * 109.46619 * 119.99662 * 2 1 3 33 33 H 1.08001 * 128.03447 * 359.97438 * 7 6 4 34 34 H 1.09008 * 109.47304 * 210.00370 * 9 8 7 35 35 H 1.09001 * 109.47576 * 330.00566 * 9 8 7 36 36 H 1.08999 * 109.47571 * 300.00370 * 11 10 9 37 37 H 1.09002 * 109.46880 * 60.00327 * 11 10 9 38 38 H 1.08999 * 109.47073 * 180.02562 * 11 10 9 39 39 H 1.09001 * 111.01025 * 271.94903 * 16 14 3 40 40 H 1.09001 * 111.00014 * 35.79995 * 16 14 3 41 41 H 1.08997 * 110.37197 * 204.15563 * 17 16 14 42 42 H 1.09009 * 110.36672 * 81.83341 * 17 16 14 43 43 H 0.97004 * 120.00057 * 180.02562 * 22 21 19 44 44 H 1.09007 * 109.88481 * 239.52464 * 27 18 17 45 45 H 1.09002 * 109.88520 * 118.35885 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1827 2.0378 -1.1656 5 8 2.6727 3.1494 -1.1726 6 6 1.7652 1.4031 -2.4396 7 6 1.9691 1.9087 -3.7537 8 6 1.4123 0.9702 -4.5537 9 6 1.3433 0.9967 -6.0588 10 8 2.5025 0.3601 -6.6001 11 6 2.5360 0.3306 -8.0284 12 8 0.9330 0.0130 -3.7473 13 7 1.1391 0.2615 -2.5822 14 6 2.3281 2.0487 1.2666 15 1 2.1696 1.3720 2.1064 16 6 3.7819 2.5908 1.2604 17 6 3.6811 3.7627 2.2684 18 7 2.3512 4.3524 2.0299 19 6 1.9858 5.6402 2.3184 20 1 0.9824 5.9777 2.1043 21 6 2.9049 6.5117 2.8865 22 7 4.1276 6.1005 3.1473 23 14 2.4062 8.2683 3.2807 24 1 0.9881 8.4789 2.8936 25 1 2.5639 8.5127 4.7369 26 1 3.2703 9.2098 2.5243 27 6 1.4824 3.3291 1.4303 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 2.4553 2.8280 -4.0450 34 1 0.4499 0.4678 -6.3910 35 1 1.3025 2.0303 -6.4026 36 1 1.6674 -0.2123 -8.4011 37 1 2.5198 1.3503 -8.4133 38 1 3.4461 -0.1690 -8.3603 39 1 4.4829 1.8332 1.6107 40 1 4.0604 2.9504 0.2699 41 1 4.4623 4.4978 2.0749 42 1 3.7536 3.3911 3.2907 43 1 4.7697 6.7094 3.5446 44 1 1.1294 3.6672 0.4559 45 1 0.6344 3.1320 2.0862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033981334.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:50 Heat of formation + Delta-G solvation = 18.053640 kcal Electronic energy + Delta-G solvation = -28148.976009 eV Core-core repulsion = 24171.531280 eV Total energy + Delta-G solvation = -3977.444729 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.22877 -41.46809 -38.90436 -38.60388 -37.02345 -35.21966 -34.32776 -33.58494 -31.73918 -30.72043 -29.05838 -28.70822 -26.90935 -26.48750 -25.60766 -24.30544 -23.44953 -22.36022 -22.11516 -19.91835 -19.06753 -18.94871 -18.68396 -17.99591 -17.25260 -17.20094 -16.76968 -16.65671 -16.31527 -16.17283 -15.72165 -15.50086 -14.97464 -14.87474 -14.79709 -14.23078 -13.84897 -13.78768 -13.71682 -13.37607 -13.16609 -13.02470 -12.94640 -12.77255 -12.60732 -12.40579 -12.35273 -12.28431 -12.12125 -12.00256 -11.87989 -11.57943 -11.41782 -10.91393 -10.74959 -10.69909 -10.65276 -9.79086 -8.89763 -7.78342 -5.22772 -0.05055 0.47614 1.42923 1.45749 1.55429 1.60299 1.84214 1.98716 2.48219 2.72040 2.97678 3.30383 3.40690 3.69604 3.78753 3.81654 3.84014 4.02919 4.04818 4.09094 4.19823 4.36061 4.40816 4.48804 4.52144 4.58901 4.60219 4.67011 4.69671 4.75145 4.78769 4.91436 4.96162 4.97297 4.98164 5.04961 5.32406 5.41007 5.55636 5.68698 5.77540 6.10775 6.21230 6.29167 6.81677 7.00448 7.08885 7.75558 8.39884 9.23851 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017422 B = 0.003034 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.802779 B = 9227.553120 C =10100.021046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.100 3.900 3 N -0.587 5.587 4 C 0.582 3.418 5 O -0.541 6.541 6 C -0.044 4.044 7 C -0.171 4.171 8 C -0.022 4.022 9 C 0.144 3.856 10 O -0.415 6.415 11 C 0.026 3.974 12 O 0.135 5.865 13 N -0.315 5.315 14 C 0.151 3.849 15 H 0.126 0.874 16 C -0.146 4.146 17 C 0.163 3.837 18 N -0.618 5.618 19 C -0.238 4.238 20 H 0.074 0.926 21 C -0.068 4.068 22 N -0.949 5.949 23 Si 0.984 3.016 24 H -0.269 1.269 25 H -0.286 1.286 26 H -0.291 1.291 27 C 0.135 3.865 28 H 0.041 0.959 29 H 0.091 0.909 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.185 0.815 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.068 0.932 42 H -0.001 1.001 43 H 0.248 0.752 44 H 0.010 0.990 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.286 -18.300 -20.672 28.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.021 4.021 3 N -0.319 5.319 4 C 0.369 3.631 5 O -0.417 6.417 6 C -0.201 4.201 7 C -0.194 4.194 8 C -0.085 4.085 9 C 0.068 3.932 10 O -0.335 6.335 11 C -0.069 4.069 12 O 0.056 5.944 13 N -0.014 5.014 14 C 0.048 3.952 15 H 0.144 0.856 16 C -0.185 4.185 17 C 0.037 3.963 18 N -0.344 5.344 19 C -0.367 4.367 20 H 0.092 0.908 21 C -0.261 4.261 22 N -0.598 5.598 23 Si 0.812 3.188 24 H -0.193 1.193 25 H -0.213 1.213 26 H -0.218 1.218 27 C 0.008 3.992 28 H 0.060 0.940 29 H 0.110 0.890 30 H 0.069 0.931 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.202 0.798 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.017 0.983 43 H 0.057 0.943 44 H 0.028 0.972 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -7.248 -18.508 -19.530 27.866 hybrid contribution 0.184 1.997 0.028 2.006 sum -7.065 -16.511 -19.502 26.511 Atomic orbital electron populations 1.22064 0.94722 1.03381 1.01142 1.22030 0.95676 0.79764 1.04655 1.47939 1.64127 1.15281 1.04515 1.17365 0.78684 0.84558 0.82526 1.90872 1.44050 1.20303 1.86477 1.23401 1.05398 0.94850 0.96495 1.22662 1.03670 1.03636 0.89437 1.24384 0.99562 0.88431 0.96171 1.20945 0.90571 1.00958 0.80761 1.87925 1.42509 1.79919 1.23160 1.23006 1.03713 1.02270 0.77957 1.84764 1.57763 1.40687 1.11171 1.74369 1.14659 1.14901 0.97472 1.22079 0.94797 0.93335 0.85020 0.85636 1.23291 0.95912 0.98451 1.00884 1.21606 0.88822 0.92733 0.93114 1.44602 1.09539 1.08105 1.72184 1.19435 0.96778 0.86956 1.33516 0.90787 1.25669 0.96058 1.02610 1.01718 1.70067 1.04756 1.35174 1.49843 0.84933 0.77580 0.79128 0.77199 1.19333 1.21252 1.21810 1.21557 0.93248 0.89218 0.95168 0.93958 0.88982 0.93116 0.89198 0.87742 0.79794 0.87603 0.87139 0.91870 0.92347 0.88777 0.89615 0.91694 0.91367 0.98266 0.94257 0.97199 0.95463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.70 71.98 0.70 -2.64 16 2 C 0.10 2.34 5.67 86.38 0.49 2.83 16 3 N -0.59 -19.17 2.54 -794.11 -2.02 -21.18 16 4 C 0.58 21.57 6.76 86.93 0.59 22.16 16 5 O -0.54 -25.14 13.34 -3.66 -0.05 -25.19 16 6 C -0.04 -1.32 6.68 42.96 0.29 -1.03 16 7 C -0.17 -4.23 10.93 22.60 0.25 -3.98 16 8 C -0.02 -0.42 7.10 25.01 0.18 -0.24 16 9 C 0.14 1.53 6.49 71.23 0.46 1.99 16 10 O -0.42 -6.01 10.69 -148.98 -1.59 -7.61 16 11 C 0.03 0.18 11.01 113.37 1.25 1.43 16 12 O 0.14 2.82 11.18 71.87 0.80 3.62 16 13 N -0.31 -7.83 7.17 -49.52 -0.35 -8.19 16 14 C 0.15 5.68 3.45 46.18 0.16 5.84 16 15 H 0.13 3.92 7.82 -2.38 -0.02 3.90 16 16 C -0.15 -6.30 6.39 31.98 0.20 -6.10 16 17 C 0.16 8.77 5.89 86.85 0.51 9.28 16 18 N -0.62 -35.21 3.39 -691.98 -2.35 -37.56 16 19 C -0.24 -14.53 10.27 84.03 0.86 -13.67 16 20 H 0.07 4.40 7.83 -2.91 -0.02 4.37 16 21 C -0.07 -4.13 5.49 84.86 0.47 -3.67 16 22 N -0.95 -59.78 10.09 21.65 0.22 -59.56 16 23 Si 0.98 48.43 29.55 68.60 2.03 50.46 16 24 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 26 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 27 C 0.13 6.33 6.52 86.73 0.57 6.90 16 28 H 0.04 1.05 6.60 -2.39 -0.02 1.03 16 29 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 2.08 5.75 -2.39 -0.01 2.06 16 32 H 0.10 1.94 7.87 -2.39 -0.02 1.93 16 33 H 0.18 4.32 8.06 -2.91 -0.02 4.29 16 34 H 0.11 0.54 8.14 -2.38 -0.02 0.53 16 35 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 40 H 0.06 3.13 5.64 -2.39 -0.01 3.12 16 41 H 0.07 4.22 5.87 -2.39 -0.01 4.21 16 42 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 43 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 44 H 0.01 0.51 6.43 -2.38 -0.02 0.50 16 45 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -80.50 363.21 4.65 -75.85 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 1.00 Total: 10.27 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: 6.97 Total: 19.09 kcal Atomic # 7 Polarization: -121.99 SS G_CDS: -4.50 Total: -126.49 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.84 Total: -29.18 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.03 Total: 50.46 kcal Total: -80.50 4.65 -75.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033981334.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.901 kcal (2) G-P(sol) polarization free energy of solvation -80.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds