Wall clock time and date at job start Tue Mar 31 2020 14:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47285 * 2 1 4 4 C 1.34773 * 120.00232 * 276.47602 * 3 2 1 5 5 O 1.21610 * 120.00266 * 175.42117 * 4 3 2 6 6 C 1.47417 * 120.00128 * 355.42831 * 4 3 2 7 7 C 1.36085 * 126.45460 * 185.89047 * 6 4 3 8 8 O 1.34256 * 106.95433 * 179.83950 * 7 6 4 9 9 C 1.34052 * 108.22162 * 0.42418 * 8 7 6 10 10 C 1.50701 * 125.37236 * 179.69689 * 9 8 7 11 11 O 1.42901 * 109.47342 * 270.03872 * 10 9 8 12 12 C 1.42898 * 113.99997 * 180.02562 * 11 10 9 13 13 N 1.29922 * 109.24648 * 359.73049 * 9 8 7 14 14 C 1.46506 * 119.99829 * 96.46879 * 3 2 1 15 15 H 1.09001 * 110.88518 * 3.88970 * 14 3 2 16 16 C 1.55154 * 111.00447 * 240.00202 * 14 3 2 17 17 C 1.54324 * 102.94145 * 206.38693 * 16 14 3 18 18 N 1.47028 * 107.27002 * 22.19798 * 17 16 14 19 19 C 1.36934 * 125.64583 * 181.02574 * 18 17 16 20 20 H 1.07999 * 119.99746 * 180.02562 * 19 18 17 21 21 C 1.38815 * 120.00424 * 359.74277 * 19 18 17 22 22 N 1.31621 * 119.99792 * 0.27993 * 21 19 18 23 23 Si 1.86799 * 120.00278 * 180.28198 * 21 19 18 24 24 H 1.48493 * 109.47171 * 89.99777 * 23 21 19 25 25 H 1.48500 * 109.46950 * 210.00157 * 23 21 19 26 26 H 1.48506 * 109.46787 * 329.99682 * 23 21 19 27 27 C 1.47419 * 108.70045 * 1.28284 * 18 17 16 28 28 H 1.09003 * 109.47128 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47112 * 299.99993 * 1 2 3 30 30 H 1.09002 * 109.47345 * 59.99948 * 1 2 3 31 31 H 1.09000 * 109.47485 * 240.00167 * 2 1 3 32 32 H 1.09002 * 109.47345 * 120.00052 * 2 1 3 33 33 H 1.08006 * 126.52001 * 359.97438 * 7 6 4 34 34 H 1.09001 * 109.47770 * 30.04187 * 10 9 8 35 35 H 1.09001 * 109.46988 * 150.04049 * 10 9 8 36 36 H 1.09008 * 109.46706 * 180.02562 * 12 11 10 37 37 H 1.08997 * 109.47721 * 300.00217 * 12 11 10 38 38 H 1.09002 * 109.47024 * 60.00404 * 12 11 10 39 39 H 1.09001 * 110.71890 * 88.03074 * 16 14 3 40 40 H 1.08991 * 110.72265 * 324.75283 * 16 14 3 41 41 H 1.08996 * 109.88515 * 262.77925 * 17 16 14 42 42 H 1.08997 * 109.88336 * 141.61487 * 17 16 14 43 43 H 0.96997 * 120.00404 * 180.02562 * 22 21 19 44 44 H 1.09004 * 110.36204 * 94.48848 * 27 18 17 45 45 H 1.09007 * 110.36233 * 216.80400 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1189 2.0605 -1.1597 5 8 2.4443 3.2322 -1.1519 6 6 1.8341 1.3832 -2.4377 7 6 2.0011 1.9042 -3.6837 8 8 1.6277 0.9560 -4.5578 9 6 1.2310 -0.1205 -3.8645 10 6 0.7267 -1.4075 -4.4646 11 8 -0.6909 -1.3333 -4.6288 12 6 -1.2731 -2.5099 -5.1934 13 7 1.3493 0.1213 -2.5934 14 6 2.3973 2.0242 1.2607 15 1 2.3231 1.3231 2.0921 16 6 1.5366 3.2886 1.5209 17 6 2.4546 4.1549 2.4088 18 7 3.8358 3.7086 2.1748 19 6 4.9519 4.2121 2.7880 20 1 5.9266 3.8149 2.5460 21 6 4.8311 5.2371 3.7163 22 7 3.6432 5.7212 4.0113 23 14 6.3543 5.9293 4.5470 24 1 6.8882 7.0568 3.7415 25 1 6.0001 6.4149 5.9049 26 1 7.3856 4.8661 4.6549 27 6 3.8207 2.6335 1.1662 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.3667 2.8917 -3.9238 34 1 1.1970 -1.5648 -5.4353 35 1 0.9728 -2.2380 -3.8029 36 1 -2.3507 -2.3736 -5.2858 37 1 -0.8442 -2.6904 -6.1791 38 1 -1.0685 -3.3629 -4.5464 39 1 0.6204 3.0291 2.0512 40 1 1.3103 3.8002 0.5855 41 1 2.1932 4.0171 3.4579 42 1 2.3528 5.2048 2.1341 43 1 3.5588 6.4377 4.6596 44 1 3.9950 3.0440 0.1716 45 1 4.5720 1.8802 1.4036 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034002519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:54 Heat of formation + Delta-G solvation = 0.875410 kcal Electronic energy + Delta-G solvation = -28155.553982 eV Core-core repulsion = 24177.364349 eV Total energy + Delta-G solvation = -3978.189633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.66446 -39.87785 -38.40462 -36.75179 -35.70141 -34.70999 -32.28905 -31.64346 -30.14385 -28.93417 -28.17676 -27.08647 -26.14789 -24.84093 -23.90442 -22.80795 -22.02101 -20.68301 -19.93840 -19.30640 -17.54714 -17.45995 -16.85445 -16.69442 -16.33122 -16.15023 -16.00935 -15.56703 -14.75028 -14.50169 -14.33606 -13.89563 -13.68704 -13.58766 -13.32562 -13.05018 -12.89043 -12.66301 -12.13718 -12.08337 -11.92699 -11.72982 -11.69496 -11.62974 -11.10641 -10.83615 -10.80541 -10.59356 -10.43561 -10.36044 -10.24465 -10.01065 -9.78606 -9.55107 -9.28964 -9.22896 -8.49959 -8.21126 -6.66077 -5.58726 -2.91200 0.92426 1.70566 2.25163 3.05567 3.27906 3.45777 3.47843 3.52147 3.54199 3.80865 4.43624 4.46852 4.61578 4.68762 4.79383 4.82287 4.89945 5.18809 5.19268 5.28979 5.41396 5.45565 5.51469 5.59664 5.62008 5.65482 5.77184 5.86048 5.94407 6.01575 6.15422 6.39323 6.43575 6.45946 6.60076 6.68475 6.76506 6.83377 7.23761 7.30165 7.66074 7.71421 7.81256 7.96046 8.36902 8.41758 9.34576 9.95024 10.62526 11.53017 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.030364 B = 0.002731 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.909416 B =10251.517581 C =10656.060633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.099 3.901 3 N -0.585 5.585 4 C 0.593 3.407 5 O -0.513 6.513 6 C -0.063 4.063 7 C 0.020 3.980 8 O -0.191 6.191 9 C 0.182 3.818 10 C 0.162 3.838 11 O -0.384 6.384 12 C 0.033 3.967 13 N -0.428 5.428 14 C 0.131 3.869 15 H 0.094 0.906 16 C -0.154 4.154 17 C 0.185 3.815 18 N -0.602 5.602 19 C -0.222 4.222 20 H 0.076 0.924 21 C -0.011 4.011 22 N -0.923 5.923 23 Si 0.912 3.088 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.126 3.874 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.105 0.895 32 H 0.070 0.930 33 H 0.234 0.766 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.046 0.954 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.044 0.956 42 H 0.042 0.958 43 H 0.251 0.749 44 H 0.045 0.955 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.394 -19.079 -19.036 28.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.024 4.024 3 N -0.317 5.317 4 C 0.379 3.621 5 O -0.389 6.389 6 C -0.183 4.183 7 C -0.054 4.054 8 O -0.077 6.077 9 C -0.027 4.027 10 C 0.085 3.915 11 O -0.302 6.302 12 C -0.063 4.063 13 N -0.161 5.161 14 C 0.027 3.973 15 H 0.112 0.888 16 C -0.193 4.193 17 C 0.060 3.940 18 N -0.329 5.329 19 C -0.350 4.350 20 H 0.094 0.906 21 C -0.207 4.207 22 N -0.571 5.571 23 Si 0.743 3.257 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.001 4.001 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.123 0.877 32 H 0.089 0.911 33 H 0.250 0.750 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -9.437 -18.588 -18.350 27.772 hybrid contribution 0.940 0.657 -0.079 1.150 sum -8.496 -17.931 -18.429 27.080 Atomic orbital electron populations 1.22022 0.95969 1.01497 1.01726 1.21939 0.94720 0.81990 1.03767 1.47783 1.63404 1.14223 1.06249 1.16759 0.78230 0.85515 0.81632 1.90887 1.47087 1.14648 1.86239 1.22054 1.08392 0.91958 0.95924 1.25392 0.98953 0.94173 0.86893 1.84367 1.62144 1.21983 1.39176 1.25739 1.00733 0.90415 0.85798 1.20496 0.82705 0.88028 1.00287 1.87976 1.18869 1.39272 1.84106 1.22831 0.99352 0.87010 0.97152 1.70973 1.14909 1.14404 1.15780 1.22530 0.97196 0.94430 0.83119 0.88829 1.23250 0.98074 0.96468 1.01500 1.21054 0.81792 0.95429 0.95702 1.44330 1.03348 1.39585 1.45604 1.19049 0.85627 1.13803 1.16540 0.90572 1.24795 0.96853 0.99068 0.99990 1.69976 1.20560 1.29632 1.36913 0.86114 0.82000 0.78960 0.78674 1.21706 1.21766 1.20786 1.21911 0.92447 0.91081 0.94656 0.92162 0.93103 0.92587 0.87723 0.91129 0.75009 0.90044 0.88486 0.88928 0.93518 0.93302 0.92712 0.90690 0.93786 0.93959 0.93881 0.93780 0.94949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.73 37.15 0.36 -1.51 16 2 C 0.10 1.28 5.72 -4.04 -0.02 1.26 16 3 N -0.59 -9.69 2.58 -164.80 -0.42 -10.12 16 4 C 0.59 10.31 6.89 -12.52 -0.09 10.23 16 5 O -0.51 -10.68 12.93 5.27 0.07 -10.61 16 6 C -0.06 -0.89 6.49 -83.02 -0.54 -1.42 16 7 C 0.02 0.23 11.95 29.96 0.36 0.59 16 8 O -0.19 -2.08 10.73 6.51 0.07 -2.01 16 9 C 0.18 1.89 7.93 -13.09 -0.10 1.79 16 10 C 0.16 1.08 6.56 36.01 0.24 1.32 16 11 O -0.38 -3.16 10.69 -35.23 -0.38 -3.54 16 12 C 0.03 0.14 11.01 101.05 1.11 1.25 16 13 N -0.43 -5.30 6.67 -7.66 -0.05 -5.35 16 14 C 0.13 2.53 3.57 -65.66 -0.23 2.30 16 15 H 0.09 1.70 7.78 -51.93 -0.40 1.29 16 16 C -0.15 -3.28 6.32 -24.90 -0.16 -3.44 16 17 C 0.19 4.89 5.37 -3.06 -0.02 4.88 16 18 N -0.60 -16.60 3.39 -169.93 -0.58 -17.18 16 19 C -0.22 -6.54 10.28 -15.06 -0.15 -6.70 16 20 H 0.08 2.17 7.83 -52.49 -0.41 1.75 16 21 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 22 N -0.92 -28.40 10.31 55.49 0.57 -27.83 16 23 Si 0.91 23.03 29.55 -169.99 -5.02 18.01 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 27 C 0.13 2.92 6.58 -2.41 -0.02 2.90 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.76 7.11 -51.93 -0.37 0.39 16 31 H 0.11 1.31 5.26 -51.93 -0.27 1.04 16 32 H 0.07 0.83 7.81 -51.93 -0.41 0.43 16 33 H 0.23 2.13 8.06 -52.48 -0.42 1.70 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.33 8.14 -51.92 -0.42 -0.09 16 37 H 0.05 0.13 8.14 -51.93 -0.42 -0.29 16 38 H 0.05 0.15 8.14 -51.93 -0.42 -0.27 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.07 1.68 6.09 -51.93 -0.32 1.37 16 41 H 0.04 1.24 7.39 -51.93 -0.38 0.86 16 42 H 0.04 1.25 7.50 -51.93 -0.39 0.86 16 43 H 0.25 7.46 8.31 -40.82 -0.34 7.13 16 44 H 0.04 1.09 5.69 -51.93 -0.30 0.80 16 45 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 364.18 15.07 5.49 5.49 Total: -1.00 -36.01 364.18 -6.22 -42.23 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -6.61 Total: -2.11 kcal Atomic # 6 Polarization: 12.37 SS G_CDS: 0.64 Total: 13.01 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: -0.48 Total: -60.47 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.24 Total: -16.15 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.01 -6.22 -42.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034002519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.109 kcal (2) G-P(sol) polarization free energy of solvation -36.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds