Wall clock time and date at job start Tue Mar 31 2020 14:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47285 * 2 1 4 4 C 1.34773 * 120.00232 * 276.47602 * 3 2 1 5 5 O 1.21610 * 120.00266 * 175.42117 * 4 3 2 6 6 C 1.47417 * 120.00128 * 355.42831 * 4 3 2 7 7 C 1.36085 * 126.45460 * 185.89047 * 6 4 3 8 8 O 1.34256 * 106.95433 * 179.83950 * 7 6 4 9 9 C 1.34052 * 108.22162 * 0.42418 * 8 7 6 10 10 C 1.50701 * 125.37236 * 179.69689 * 9 8 7 11 11 O 1.42901 * 109.47342 * 270.03872 * 10 9 8 12 12 C 1.42898 * 113.99997 * 180.02562 * 11 10 9 13 13 N 1.29922 * 109.24648 * 359.73049 * 9 8 7 14 14 C 1.46506 * 119.99829 * 96.46879 * 3 2 1 15 15 H 1.09001 * 110.88518 * 3.88970 * 14 3 2 16 16 C 1.55154 * 111.00447 * 240.00202 * 14 3 2 17 17 C 1.54324 * 102.94145 * 206.38693 * 16 14 3 18 18 N 1.47028 * 107.27002 * 22.19798 * 17 16 14 19 19 C 1.36934 * 125.64583 * 181.02574 * 18 17 16 20 20 H 1.07999 * 119.99746 * 180.02562 * 19 18 17 21 21 C 1.38815 * 120.00424 * 359.74277 * 19 18 17 22 22 N 1.31621 * 119.99792 * 0.27993 * 21 19 18 23 23 Si 1.86799 * 120.00278 * 180.28198 * 21 19 18 24 24 H 1.48493 * 109.47171 * 89.99777 * 23 21 19 25 25 H 1.48500 * 109.46950 * 210.00157 * 23 21 19 26 26 H 1.48506 * 109.46787 * 329.99682 * 23 21 19 27 27 C 1.47419 * 108.70045 * 1.28284 * 18 17 16 28 28 H 1.09003 * 109.47128 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47112 * 299.99993 * 1 2 3 30 30 H 1.09002 * 109.47345 * 59.99948 * 1 2 3 31 31 H 1.09000 * 109.47485 * 240.00167 * 2 1 3 32 32 H 1.09002 * 109.47345 * 120.00052 * 2 1 3 33 33 H 1.08006 * 126.52001 * 359.97438 * 7 6 4 34 34 H 1.09001 * 109.47770 * 30.04187 * 10 9 8 35 35 H 1.09001 * 109.46988 * 150.04049 * 10 9 8 36 36 H 1.09008 * 109.46706 * 180.02562 * 12 11 10 37 37 H 1.08997 * 109.47721 * 300.00217 * 12 11 10 38 38 H 1.09002 * 109.47024 * 60.00404 * 12 11 10 39 39 H 1.09001 * 110.71890 * 88.03074 * 16 14 3 40 40 H 1.08991 * 110.72265 * 324.75283 * 16 14 3 41 41 H 1.08996 * 109.88515 * 262.77925 * 17 16 14 42 42 H 1.08997 * 109.88336 * 141.61487 * 17 16 14 43 43 H 0.96997 * 120.00404 * 180.02562 * 22 21 19 44 44 H 1.09004 * 110.36204 * 94.48848 * 27 18 17 45 45 H 1.09007 * 110.36233 * 216.80400 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1189 2.0605 -1.1597 5 8 2.4443 3.2322 -1.1519 6 6 1.8341 1.3832 -2.4377 7 6 2.0011 1.9042 -3.6837 8 8 1.6277 0.9560 -4.5578 9 6 1.2310 -0.1205 -3.8645 10 6 0.7267 -1.4075 -4.4646 11 8 -0.6909 -1.3333 -4.6288 12 6 -1.2731 -2.5099 -5.1934 13 7 1.3493 0.1213 -2.5934 14 6 2.3973 2.0242 1.2607 15 1 2.3231 1.3231 2.0921 16 6 1.5366 3.2886 1.5209 17 6 2.4546 4.1549 2.4088 18 7 3.8358 3.7086 2.1748 19 6 4.9519 4.2121 2.7880 20 1 5.9266 3.8149 2.5460 21 6 4.8311 5.2371 3.7163 22 7 3.6432 5.7212 4.0113 23 14 6.3543 5.9293 4.5470 24 1 6.8882 7.0568 3.7415 25 1 6.0001 6.4149 5.9049 26 1 7.3856 4.8661 4.6549 27 6 3.8207 2.6335 1.1662 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.3667 2.8917 -3.9238 34 1 1.1970 -1.5648 -5.4353 35 1 0.9728 -2.2380 -3.8029 36 1 -2.3507 -2.3736 -5.2858 37 1 -0.8442 -2.6904 -6.1791 38 1 -1.0685 -3.3629 -4.5464 39 1 0.6204 3.0291 2.0512 40 1 1.3103 3.8002 0.5855 41 1 2.1932 4.0171 3.4579 42 1 2.3528 5.2048 2.1341 43 1 3.5588 6.4377 4.6596 44 1 3.9950 3.0440 0.1716 45 1 4.5720 1.8802 1.4036 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034002519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:53 Heat of formation + Delta-G solvation = -25.334865 kcal Electronic energy + Delta-G solvation = -28156.690545 eV Core-core repulsion = 24177.364349 eV Total energy + Delta-G solvation = -3979.326196 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.55599 -41.30125 -38.87972 -38.53578 -36.98228 -35.83921 -34.23970 -32.49162 -31.62113 -30.75722 -29.07219 -28.54347 -26.73853 -26.55458 -25.33781 -23.89177 -23.03469 -22.10378 -21.91090 -20.51609 -18.97255 -18.50186 -18.25001 -17.74950 -17.21036 -16.97174 -16.74759 -16.64515 -16.51123 -15.99597 -15.94948 -15.38462 -15.00244 -14.58594 -14.56607 -14.28007 -14.12817 -13.84288 -13.65269 -13.35719 -13.25523 -12.95500 -12.79561 -12.75790 -12.74819 -12.36534 -12.24511 -12.13984 -12.02278 -11.99397 -11.89081 -11.75491 -11.18364 -10.81288 -10.73496 -10.71784 -10.24977 -9.63677 -8.87071 -7.84404 -5.20914 -0.00168 0.76732 1.44183 1.45220 1.48210 1.56643 1.84127 2.14946 2.49978 2.57838 3.19695 3.32923 3.49261 3.69898 3.73165 3.91935 4.00312 4.13650 4.15988 4.26947 4.27574 4.43741 4.51620 4.55580 4.57133 4.59731 4.66378 4.68517 4.71029 4.80042 4.86526 4.95701 4.98478 5.01271 5.15391 5.22374 5.42215 5.47812 5.63886 5.68768 5.76362 6.06568 6.18074 6.27162 6.46548 7.06852 7.09687 7.75451 8.41874 9.26325 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.030364 B = 0.002731 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.909416 B =10251.517581 C =10656.060633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.097 3.903 3 N -0.584 5.584 4 C 0.590 3.410 5 O -0.558 6.558 6 C -0.091 4.091 7 C 0.034 3.966 8 O -0.188 6.188 9 C 0.189 3.811 10 C 0.160 3.840 11 O -0.415 6.415 12 C 0.028 3.972 13 N -0.439 5.439 14 C 0.150 3.850 15 H 0.115 0.885 16 C -0.138 4.138 17 C 0.197 3.803 18 N -0.622 5.622 19 C -0.243 4.243 20 H 0.082 0.918 21 C -0.069 4.069 22 N -0.953 5.953 23 Si 0.985 3.015 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.265 1.265 27 C 0.124 3.876 28 H 0.085 0.915 29 H 0.043 0.957 30 H 0.038 0.962 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.251 0.749 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.020 0.980 42 H -0.003 1.003 43 H 0.247 0.753 44 H 0.028 0.972 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.383 -21.884 -20.253 31.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.024 4.024 3 N -0.314 5.314 4 C 0.378 3.622 5 O -0.438 6.438 6 C -0.211 4.211 7 C -0.040 4.040 8 O -0.074 6.074 9 C -0.020 4.020 10 C 0.083 3.917 11 O -0.335 6.335 12 C -0.068 4.068 13 N -0.171 5.171 14 C 0.045 3.955 15 H 0.133 0.867 16 C -0.177 4.177 17 C 0.071 3.929 18 N -0.349 5.349 19 C -0.372 4.372 20 H 0.100 0.900 21 C -0.262 4.262 22 N -0.602 5.602 23 Si 0.812 3.188 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.190 1.190 27 C -0.002 4.002 28 H 0.104 0.896 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.131 0.869 32 H 0.107 0.893 33 H 0.267 0.733 34 H 0.128 0.872 35 H 0.136 0.864 36 H 0.113 0.887 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.038 0.962 42 H 0.016 0.984 43 H 0.057 0.943 44 H 0.046 0.954 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.439 -21.466 -19.589 30.555 hybrid contribution 0.895 1.468 0.172 1.727 sum -8.544 -19.998 -19.418 29.154 Atomic orbital electron populations 1.21940 0.95125 1.02771 1.00473 1.22190 0.95295 0.79868 1.05088 1.47821 1.63173 1.15437 1.04972 1.17172 0.77136 0.85101 0.82795 1.90860 1.49168 1.16663 1.87070 1.21641 1.11084 0.93299 0.95029 1.25722 0.97258 0.94717 0.86306 1.84415 1.61994 1.22053 1.38905 1.26624 0.99009 0.90991 0.85367 1.20847 0.82435 0.86308 1.02062 1.87917 1.19523 1.41275 1.84747 1.23019 0.99425 0.86184 0.98140 1.70887 1.15665 1.13589 1.16960 1.22200 0.93954 0.94052 0.85257 0.86702 1.23031 0.98215 0.96532 0.99957 1.20757 0.82826 0.94074 0.95211 1.44634 1.03267 1.40770 1.46202 1.19469 0.86618 1.14256 1.16812 0.90035 1.25738 1.00129 0.99474 1.00866 1.70209 1.22769 1.29917 1.37332 0.84992 0.78433 0.78261 0.77108 1.21535 1.21702 1.19003 1.21978 0.95329 0.90240 0.92617 0.89587 0.93824 0.94286 0.86862 0.89347 0.73296 0.87227 0.86408 0.88737 0.91889 0.91966 0.90158 0.92002 0.96214 0.98449 0.94342 0.95406 0.94024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 9.73 71.98 0.70 -2.50 16 2 C 0.10 2.30 5.72 86.38 0.49 2.79 16 3 N -0.58 -18.81 2.58 -793.56 -2.05 -20.86 16 4 C 0.59 20.56 6.89 86.66 0.60 21.16 16 5 O -0.56 -24.00 12.93 -4.06 -0.05 -24.05 16 6 C -0.09 -2.51 6.49 40.40 0.26 -2.24 16 7 C 0.03 0.77 11.95 67.32 0.80 1.57 16 8 O -0.19 -3.72 10.73 0.37 0.00 -3.71 16 9 C 0.19 3.52 7.93 88.39 0.70 4.22 16 10 C 0.16 1.63 6.56 71.24 0.47 2.10 16 11 O -0.42 -5.78 10.69 -148.98 -1.59 -7.37 16 12 C 0.03 0.16 11.01 113.37 1.25 1.41 16 13 N -0.44 -10.07 6.67 -293.05 -1.96 -12.03 16 14 C 0.15 5.73 3.57 46.46 0.17 5.89 16 15 H 0.12 3.94 7.78 -2.39 -0.02 3.92 16 16 C -0.14 -5.99 6.32 31.78 0.20 -5.79 16 17 C 0.20 10.85 5.37 86.73 0.47 11.31 16 18 N -0.62 -35.31 3.39 -691.54 -2.35 -37.66 16 19 C -0.24 -14.62 10.28 84.03 0.86 -13.75 16 20 H 0.08 4.68 7.83 -2.91 -0.02 4.66 16 21 C -0.07 -4.19 5.49 84.86 0.47 -3.72 16 22 N -0.95 -60.69 10.31 21.65 0.22 -60.47 16 23 Si 0.98 48.02 29.55 68.60 2.03 50.05 16 24 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 25 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 26 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 27 C 0.12 5.83 6.58 86.93 0.57 6.41 16 28 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.04 1.00 7.11 -2.39 -0.02 0.98 16 31 H 0.11 2.57 5.26 -2.39 -0.01 2.56 16 32 H 0.09 1.80 7.81 -2.39 -0.02 1.79 16 33 H 0.25 4.40 8.06 -2.91 -0.02 4.37 16 34 H 0.11 0.49 8.14 -2.39 -0.02 0.48 16 35 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.09 0.48 8.14 -2.38 -0.02 0.47 16 37 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 38 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.08 3.04 8.14 -2.39 -0.02 3.03 16 40 H 0.06 2.87 6.09 -2.39 -0.01 2.85 16 41 H 0.02 1.16 7.39 -2.39 -0.02 1.15 16 42 H 0.00 -0.17 7.50 -2.39 -0.02 -0.19 16 43 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 44 H 0.03 1.42 5.69 -2.39 -0.01 1.41 16 45 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -81.37 364.18 3.27 -78.10 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 1.00 Total: 9.16 kcal Atomic # 6 Polarization: 20.83 SS G_CDS: 8.01 Total: 28.84 kcal Atomic # 7 Polarization: -124.89 SS G_CDS: -6.12 Total: -131.01 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -1.64 Total: -35.14 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.03 Total: 50.05 kcal Total: -81.37 3.27 -78.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034002519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.765 kcal (2) G-P(sol) polarization free energy of solvation -81.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds