Wall clock time and date at job start Tue Mar 31 2020 14:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46495 * 109.47689 * 2 1 4 4 C 1.34786 * 119.99674 * 84.16550 * 3 2 1 5 5 O 1.21612 * 119.99578 * 185.20291 * 4 3 2 6 6 C 1.47420 * 120.00226 * 5.20369 * 4 3 2 7 7 C 1.36082 * 126.45047 * 175.80216 * 6 4 3 8 8 O 1.34258 * 106.95002 * 179.97438 * 7 6 4 9 9 C 1.34053 * 108.22683 * 0.02562 * 8 7 6 10 10 C 1.50699 * 125.37617 * 180.02562 * 9 8 7 11 11 O 1.42900 * 109.47165 * 269.94397 * 10 9 8 12 12 C 1.42895 * 113.99751 * 180.02562 * 11 10 9 13 13 N 1.29935 * 109.23951 * 359.97438 * 9 8 7 14 14 C 1.46495 * 120.00324 * 264.16818 * 3 2 1 15 15 H 1.09000 * 110.63754 * 1.68696 * 14 3 2 16 16 C 1.55159 * 110.71827 * 125.02024 * 14 3 2 17 17 C 1.54916 * 101.57791 * 153.86634 * 16 14 3 18 18 N 1.47418 * 104.83426 * 322.98972 * 17 16 14 19 19 C 1.36936 * 125.65184 * 204.16478 * 18 17 16 20 20 H 1.07998 * 120.00366 * 149.61547 * 19 18 17 21 21 C 1.38809 * 119.99821 * 329.61707 * 19 18 17 22 22 N 1.31618 * 120.00173 * 161.39473 * 21 19 18 23 23 Si 1.86807 * 120.00133 * 341.38944 * 21 19 18 24 24 H 1.48497 * 109.46818 * 85.78558 * 23 21 19 25 25 H 1.48498 * 109.47114 * 205.78991 * 23 21 19 26 26 H 1.48500 * 109.46847 * 325.79066 * 23 21 19 27 27 C 1.47027 * 108.70277 * 24.12700 * 18 17 16 28 28 H 1.08995 * 109.47680 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47122 * 300.00066 * 1 2 3 30 30 H 1.09003 * 109.47103 * 59.99773 * 1 2 3 31 31 H 1.09006 * 109.47122 * 239.99934 * 2 1 3 32 32 H 1.09005 * 109.46584 * 120.00250 * 2 1 3 33 33 H 1.08003 * 126.52870 * 0.02562 * 7 6 4 34 34 H 1.09001 * 109.46906 * 29.94513 * 10 9 8 35 35 H 1.09005 * 109.46680 * 149.94316 * 10 9 8 36 36 H 1.09004 * 109.47580 * 299.99823 * 12 11 10 37 37 H 1.09004 * 109.47415 * 59.99655 * 12 11 10 38 38 H 1.09001 * 109.46955 * 179.97438 * 12 11 10 39 39 H 1.08996 * 111.00655 * 271.93863 * 16 14 3 40 40 H 1.09000 * 111.00469 * 35.79800 * 16 14 3 41 41 H 1.09002 * 110.36385 * 204.15088 * 17 16 14 42 42 H 1.08995 * 110.36621 * 81.83195 * 17 16 14 43 43 H 0.97002 * 119.99847 * 180.02562 * 22 21 19 44 44 H 1.08998 * 109.88508 * 239.52107 * 27 18 17 45 45 H 1.09005 * 109.88142 * 118.35839 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1312 2.0560 1.1613 5 8 2.4457 3.2307 1.1537 6 6 1.8734 1.3701 2.4405 7 6 2.0251 1.8977 3.6857 8 8 1.6833 0.9391 4.5613 9 6 1.3300 -0.1537 3.8698 10 6 0.8768 -1.4586 4.4722 11 8 2.0098 -2.3019 4.6894 12 6 1.6882 -3.5717 5.2605 13 7 1.4389 0.0904 2.5983 14 6 2.3842 2.0288 -1.2621 15 1 2.2064 1.3588 -2.1033 16 6 1.6071 3.3597 -1.4414 17 6 2.5648 4.1574 -2.3615 18 7 3.9180 3.7983 -1.8996 19 6 5.0452 4.5583 -2.0639 20 1 5.8406 4.5092 -1.3349 21 6 5.1656 5.3917 -3.1674 22 7 6.0404 6.3751 -3.1570 23 14 4.0862 5.1176 -4.6671 24 1 2.7903 5.8179 -4.4789 25 1 4.7681 5.6538 -5.8724 26 1 3.8421 3.6633 -4.8422 27 6 3.8567 2.4895 -1.2326 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 2.3564 2.8976 3.9242 34 1 0.3793 -1.2665 5.4229 35 1 0.1823 -1.9511 3.7916 36 1 1.2072 -3.4239 6.2274 37 1 1.0107 -4.1079 4.5959 38 1 2.6012 -4.1521 5.3933 39 1 0.6478 3.1893 -1.9300 40 1 1.4725 3.8655 -0.4853 41 1 2.3966 5.2282 -2.2469 42 1 2.4274 3.8600 -3.4010 43 1 6.1242 6.9577 -3.9281 44 1 4.1954 2.5830 -0.2008 45 1 4.4803 1.7720 -1.7660 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034002520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:57 Heat of formation + Delta-G solvation = 2.527333 kcal Electronic energy + Delta-G solvation = -28282.791693 eV Core-core repulsion = 24304.673693 eV Total energy + Delta-G solvation = -3978.118000 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.69559 -40.01620 -38.42271 -37.03802 -35.78504 -34.79076 -32.36013 -31.70276 -30.50645 -29.25499 -28.23051 -27.63376 -26.18013 -24.92710 -23.80438 -22.86071 -22.06305 -20.91428 -20.45622 -19.30409 -17.62791 -17.43897 -16.94526 -16.78084 -16.35550 -16.20066 -16.03641 -15.65760 -15.13832 -14.79627 -14.40255 -14.04225 -13.71017 -13.45948 -13.43809 -13.32455 -12.92499 -12.86929 -12.67254 -12.10496 -12.04925 -11.94625 -11.74509 -11.66637 -11.30729 -11.11197 -11.01848 -10.81606 -10.78078 -10.38802 -10.37014 -10.07255 -9.96831 -9.54714 -9.32355 -9.28045 -8.51897 -8.32195 -6.74366 -5.85308 -3.22258 0.89750 1.66435 2.22374 2.96893 3.26178 3.37905 3.44144 3.53795 3.59152 3.78081 4.40462 4.42950 4.64818 4.65612 4.76840 4.80977 4.88101 5.08725 5.13970 5.18763 5.24217 5.25938 5.37771 5.44373 5.48878 5.53550 5.56383 5.59823 5.66265 5.83572 6.01690 6.09910 6.20841 6.35280 6.42787 6.44515 6.50774 6.68134 6.78825 6.97656 7.13098 7.19720 7.59051 7.98130 8.32705 8.45677 8.97929 9.80059 10.35538 11.31532 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.025029 B = 0.003002 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.444743 B = 9326.093968 C = 9703.192625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.093 3.907 3 N -0.588 5.588 4 C 0.593 3.407 5 O -0.506 6.506 6 C -0.064 4.064 7 C 0.022 3.978 8 O -0.191 6.191 9 C 0.183 3.817 10 C 0.162 3.838 11 O -0.384 6.384 12 C 0.033 3.967 13 N -0.429 5.429 14 C 0.134 3.866 15 H 0.094 0.906 16 C -0.146 4.146 17 C 0.121 3.879 18 N -0.600 5.600 19 C -0.235 4.235 20 H 0.084 0.916 21 C 0.026 3.974 22 N -0.911 5.911 23 Si 0.887 3.113 24 H -0.285 1.285 25 H -0.303 1.303 26 H -0.275 1.275 27 C 0.131 3.869 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.234 0.766 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.046 0.954 37 H 0.048 0.952 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.096 0.904 41 H 0.056 0.944 42 H 0.020 0.980 43 H 0.262 0.738 44 H 0.041 0.959 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.600 -20.696 16.715 30.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.029 4.029 3 N -0.319 5.319 4 C 0.379 3.621 5 O -0.381 6.381 6 C -0.184 4.184 7 C -0.052 4.052 8 O -0.076 6.076 9 C -0.025 4.025 10 C 0.084 3.916 11 O -0.302 6.302 12 C -0.063 4.063 13 N -0.162 5.162 14 C 0.031 3.969 15 H 0.112 0.888 16 C -0.185 4.185 17 C -0.004 4.004 18 N -0.327 5.327 19 C -0.363 4.363 20 H 0.102 0.898 21 C -0.173 4.173 22 N -0.554 5.554 23 Si 0.717 3.283 24 H -0.212 1.212 25 H -0.231 1.231 26 H -0.201 1.201 27 C 0.005 3.995 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.130 0.870 33 H 0.251 0.749 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.077 0.923 40 H 0.114 0.886 41 H 0.074 0.926 42 H 0.037 0.963 43 H 0.072 0.928 44 H 0.059 0.941 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -15.209 -20.294 16.124 30.052 hybrid contribution -0.639 0.258 -0.436 0.816 sum -15.848 -20.036 15.688 29.978 Atomic orbital electron populations 1.22027 0.96146 1.01484 1.01577 1.22039 0.94533 0.81965 1.04401 1.47760 1.64025 1.14324 1.05836 1.16776 0.78086 0.85617 0.81626 1.90916 1.46671 1.14343 1.86198 1.22010 1.09092 0.91451 0.95871 1.25413 0.98484 0.94436 0.86832 1.84374 1.63186 1.20880 1.39149 1.25761 1.01278 0.89718 0.85791 1.20506 0.88268 0.82635 1.00150 1.87982 1.30804 1.27723 1.83700 1.22834 1.02508 0.83944 0.97059 1.70916 1.15580 1.13914 1.15804 1.22238 0.96650 0.94303 0.83749 0.88804 1.23224 0.97077 0.95959 1.02286 1.21845 0.85496 0.98432 0.94644 1.44497 1.03356 1.16784 1.68100 1.18576 0.95308 1.17835 1.04578 0.89817 1.25287 0.96959 0.97481 0.97560 1.69818 1.37967 1.17015 1.30648 0.86793 0.79662 0.78184 0.83621 1.21200 1.23065 1.20071 1.21612 0.92137 0.88239 0.97510 0.92067 0.92793 0.93149 0.91103 0.86960 0.74945 0.90026 0.88491 0.93501 0.93323 0.88884 0.92269 0.88607 0.92551 0.96303 0.92778 0.94128 0.95327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.80 37.15 0.36 -1.27 16 2 C 0.09 1.14 5.70 -4.05 -0.02 1.11 16 3 N -0.59 -9.21 2.55 -165.29 -0.42 -9.64 16 4 C 0.59 9.99 6.70 -12.52 -0.08 9.90 16 5 O -0.51 -10.31 13.28 5.27 0.07 -10.24 16 6 C -0.06 -0.88 6.55 -83.03 -0.54 -1.42 16 7 C 0.02 0.25 11.95 29.96 0.36 0.61 16 8 O -0.19 -2.04 10.73 6.50 0.07 -1.97 16 9 C 0.18 1.86 7.93 -13.08 -0.10 1.76 16 10 C 0.16 1.05 6.56 36.01 0.24 1.28 16 11 O -0.38 -3.13 10.69 -35.23 -0.38 -3.50 16 12 C 0.03 0.14 11.01 101.05 1.11 1.25 16 13 N -0.43 -5.15 6.84 -7.66 -0.05 -5.20 16 14 C 0.13 2.40 3.44 -66.10 -0.23 2.18 16 15 H 0.09 1.50 7.81 -51.93 -0.41 1.09 16 16 C -0.15 -2.82 6.40 -24.58 -0.16 -2.98 16 17 C 0.12 2.86 4.85 -2.53 -0.01 2.85 16 18 N -0.60 -15.84 3.04 -170.07 -0.52 -16.36 16 19 C -0.24 -7.15 10.53 -15.06 -0.16 -7.31 16 20 H 0.08 2.73 8.06 -52.49 -0.42 2.31 16 21 C 0.03 0.80 5.45 -17.43 -0.10 0.70 16 22 N -0.91 -29.31 13.97 55.49 0.78 -28.53 16 23 Si 0.89 23.66 24.48 -169.99 -4.16 19.50 16 24 H -0.29 -7.37 6.99 56.52 0.39 -6.97 16 25 H -0.30 -8.08 7.11 56.52 0.40 -7.68 16 26 H -0.27 -7.17 6.84 56.52 0.39 -6.79 16 27 C 0.13 2.93 6.52 -3.06 -0.02 2.91 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.62 7.34 -51.93 -0.38 0.24 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.78 7.85 -51.93 -0.41 0.37 16 32 H 0.11 1.40 5.11 -51.93 -0.27 1.13 16 33 H 0.23 2.14 8.06 -52.48 -0.42 1.71 16 34 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.05 0.13 8.14 -51.93 -0.42 -0.30 16 37 H 0.05 0.14 8.14 -51.93 -0.42 -0.28 16 38 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.10 2.00 5.63 -51.93 -0.29 1.70 16 41 H 0.06 1.41 7.76 -51.93 -0.40 1.01 16 42 H 0.02 0.46 5.36 -51.93 -0.28 0.18 16 43 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 44 H 0.04 0.97 6.44 -51.93 -0.33 0.63 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 360.89 15.07 5.44 5.44 Total: -1.00 -37.02 360.89 -5.11 -42.12 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -6.58 Total: -3.18 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: 0.65 Total: 11.58 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.22 Total: -59.73 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.24 Total: -15.72 kcal Atomic # 14 Polarization: 23.66 SS G_CDS: -4.16 Total: 19.50 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -37.02 -5.11 -42.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034002520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.650 kcal (2) G-P(sol) polarization free energy of solvation -37.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds