Wall clock time and date at job start Tue Mar 31 2020 14:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46495 * 109.47689 * 2 1 4 4 C 1.34786 * 119.99674 * 84.16550 * 3 2 1 5 5 O 1.21612 * 119.99578 * 185.20291 * 4 3 2 6 6 C 1.47420 * 120.00226 * 5.20369 * 4 3 2 7 7 C 1.36082 * 126.45047 * 175.80216 * 6 4 3 8 8 O 1.34258 * 106.95002 * 179.97438 * 7 6 4 9 9 C 1.34053 * 108.22683 * 0.02562 * 8 7 6 10 10 C 1.50699 * 125.37617 * 180.02562 * 9 8 7 11 11 O 1.42900 * 109.47165 * 269.94397 * 10 9 8 12 12 C 1.42895 * 113.99751 * 180.02562 * 11 10 9 13 13 N 1.29935 * 109.23951 * 359.97438 * 9 8 7 14 14 C 1.46495 * 120.00324 * 264.16818 * 3 2 1 15 15 H 1.09000 * 110.63754 * 1.68696 * 14 3 2 16 16 C 1.55159 * 110.71827 * 125.02024 * 14 3 2 17 17 C 1.54916 * 101.57791 * 153.86634 * 16 14 3 18 18 N 1.47418 * 104.83426 * 322.98972 * 17 16 14 19 19 C 1.36936 * 125.65184 * 204.16478 * 18 17 16 20 20 H 1.07998 * 120.00366 * 149.61547 * 19 18 17 21 21 C 1.38809 * 119.99821 * 329.61707 * 19 18 17 22 22 N 1.31618 * 120.00173 * 161.39473 * 21 19 18 23 23 Si 1.86807 * 120.00133 * 341.38944 * 21 19 18 24 24 H 1.48497 * 109.46818 * 85.78558 * 23 21 19 25 25 H 1.48498 * 109.47114 * 205.78991 * 23 21 19 26 26 H 1.48500 * 109.46847 * 325.79066 * 23 21 19 27 27 C 1.47027 * 108.70277 * 24.12700 * 18 17 16 28 28 H 1.08995 * 109.47680 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47122 * 300.00066 * 1 2 3 30 30 H 1.09003 * 109.47103 * 59.99773 * 1 2 3 31 31 H 1.09006 * 109.47122 * 239.99934 * 2 1 3 32 32 H 1.09005 * 109.46584 * 120.00250 * 2 1 3 33 33 H 1.08003 * 126.52870 * 0.02562 * 7 6 4 34 34 H 1.09001 * 109.46906 * 29.94513 * 10 9 8 35 35 H 1.09005 * 109.46680 * 149.94316 * 10 9 8 36 36 H 1.09004 * 109.47580 * 299.99823 * 12 11 10 37 37 H 1.09004 * 109.47415 * 59.99655 * 12 11 10 38 38 H 1.09001 * 109.46955 * 179.97438 * 12 11 10 39 39 H 1.08996 * 111.00655 * 271.93863 * 16 14 3 40 40 H 1.09000 * 111.00469 * 35.79800 * 16 14 3 41 41 H 1.09002 * 110.36385 * 204.15088 * 17 16 14 42 42 H 1.08995 * 110.36621 * 81.83195 * 17 16 14 43 43 H 0.97002 * 119.99847 * 180.02562 * 22 21 19 44 44 H 1.08998 * 109.88508 * 239.52107 * 27 18 17 45 45 H 1.09005 * 109.88142 * 118.35839 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1312 2.0560 1.1613 5 8 2.4457 3.2307 1.1537 6 6 1.8734 1.3701 2.4405 7 6 2.0251 1.8977 3.6857 8 8 1.6833 0.9391 4.5613 9 6 1.3300 -0.1537 3.8698 10 6 0.8768 -1.4586 4.4722 11 8 2.0098 -2.3019 4.6894 12 6 1.6882 -3.5717 5.2605 13 7 1.4389 0.0904 2.5983 14 6 2.3842 2.0288 -1.2621 15 1 2.2064 1.3588 -2.1033 16 6 1.6071 3.3597 -1.4414 17 6 2.5648 4.1574 -2.3615 18 7 3.9180 3.7983 -1.8996 19 6 5.0452 4.5583 -2.0639 20 1 5.8406 4.5092 -1.3349 21 6 5.1656 5.3917 -3.1674 22 7 6.0404 6.3751 -3.1570 23 14 4.0862 5.1176 -4.6671 24 1 2.7903 5.8179 -4.4789 25 1 4.7681 5.6538 -5.8724 26 1 3.8421 3.6633 -4.8422 27 6 3.8567 2.4895 -1.2326 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 2.3564 2.8976 3.9242 34 1 0.3793 -1.2665 5.4229 35 1 0.1823 -1.9511 3.7916 36 1 1.2072 -3.4239 6.2274 37 1 1.0107 -4.1079 4.5959 38 1 2.6012 -4.1521 5.3933 39 1 0.6478 3.1893 -1.9300 40 1 1.4725 3.8655 -0.4853 41 1 2.3966 5.2282 -2.2469 42 1 2.4274 3.8600 -3.4010 43 1 6.1242 6.9577 -3.9281 44 1 4.1954 2.5830 -0.2008 45 1 4.4803 1.7720 -1.7660 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034002520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:56 Heat of formation + Delta-G solvation = -26.107582 kcal Electronic energy + Delta-G solvation = -28284.033396 eV Core-core repulsion = 24304.673693 eV Total energy + Delta-G solvation = -3979.359703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.56918 -41.36664 -38.90116 -38.71247 -37.00040 -35.85994 -34.42810 -32.56041 -31.97082 -30.84481 -29.40629 -28.67881 -26.71218 -26.51439 -25.24048 -23.89092 -23.04829 -22.60249 -21.93569 -20.48483 -19.06851 -18.53245 -18.20348 -17.83733 -17.32799 -17.09599 -16.98348 -16.71458 -16.54270 -16.12714 -15.85303 -15.46462 -15.06657 -14.88770 -14.66741 -14.43295 -14.29958 -13.90153 -13.84714 -13.37187 -13.26613 -13.10225 -12.91177 -12.75981 -12.72094 -12.57182 -12.41052 -12.31318 -12.16565 -12.06999 -11.92988 -11.62809 -11.18494 -10.80121 -10.79243 -10.73066 -10.26106 -9.62720 -8.90828 -8.22156 -5.58219 -0.01601 0.75342 1.31292 1.37532 1.43665 1.49780 1.80946 2.17014 2.41083 2.54683 3.01538 3.18280 3.38158 3.49297 3.71682 3.75672 3.86579 4.06765 4.14260 4.25152 4.25805 4.36527 4.42214 4.48652 4.53340 4.56040 4.57275 4.65235 4.68686 4.72704 4.79185 4.89269 4.95145 4.95267 4.98947 5.09120 5.22755 5.27786 5.49684 5.72087 5.75734 6.05799 6.08753 6.24345 6.44303 6.75761 7.07467 7.49199 8.11593 8.98820 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.025029 B = 0.003002 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.444743 B = 9326.093968 C = 9703.192625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.090 3.910 3 N -0.585 5.585 4 C 0.589 3.411 5 O -0.555 6.555 6 C -0.090 4.090 7 C 0.032 3.968 8 O -0.189 6.189 9 C 0.189 3.811 10 C 0.160 3.840 11 O -0.416 6.416 12 C 0.028 3.972 13 N -0.438 5.438 14 C 0.148 3.852 15 H 0.129 0.871 16 C -0.133 4.133 17 C 0.115 3.885 18 N -0.618 5.618 19 C -0.242 4.242 20 H 0.038 0.962 21 C -0.031 4.031 22 N -0.958 5.958 23 Si 0.958 3.042 24 H -0.270 1.270 25 H -0.301 1.301 26 H -0.259 1.259 27 C 0.129 3.871 28 H 0.086 0.914 29 H 0.040 0.960 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.249 0.751 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.032 0.968 42 H 0.032 0.968 43 H 0.265 0.735 44 H 0.015 0.985 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.787 -23.786 16.495 34.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.031 4.031 3 N -0.315 5.315 4 C 0.377 3.623 5 O -0.433 6.433 6 C -0.210 4.210 7 C -0.043 4.043 8 O -0.074 6.074 9 C -0.020 4.020 10 C 0.083 3.917 11 O -0.336 6.336 12 C -0.068 4.068 13 N -0.170 5.170 14 C 0.044 3.956 15 H 0.147 0.853 16 C -0.172 4.172 17 C -0.010 4.010 18 N -0.346 5.346 19 C -0.371 4.371 20 H 0.055 0.945 21 C -0.226 4.226 22 N -0.603 5.603 23 Si 0.785 3.215 24 H -0.195 1.195 25 H -0.229 1.229 26 H -0.183 1.183 27 C 0.003 3.997 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.129 0.871 33 H 0.265 0.735 34 H 0.127 0.873 35 H 0.137 0.863 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.095 0.905 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.074 0.926 44 H 0.034 0.966 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -18.439 -23.457 15.914 33.815 hybrid contribution 0.409 1.154 -0.167 1.236 sum -18.030 -22.302 15.748 32.718 Atomic orbital electron populations 1.21944 0.94511 1.02916 1.00907 1.22278 0.95776 0.79792 1.05238 1.47829 1.63528 1.15486 1.04706 1.17175 0.77076 0.85213 0.82854 1.90889 1.48910 1.16472 1.87053 1.21674 1.11525 0.92682 0.95093 1.25703 0.97139 0.95023 0.86413 1.84415 1.63082 1.20992 1.38925 1.26670 0.99374 0.90500 0.85438 1.20861 0.88005 0.80873 1.01919 1.87921 1.32059 1.29256 1.84330 1.23019 1.03148 0.82544 0.98052 1.70857 1.16360 1.12892 1.16861 1.22082 0.92888 0.94654 0.85977 0.85338 1.23109 0.97873 0.95573 1.00660 1.21964 0.84965 0.97893 0.96152 1.44566 1.03411 1.18224 1.68354 1.18411 0.95971 1.18771 1.03898 0.94464 1.26005 0.99195 0.96847 1.00573 1.69961 1.40592 1.18159 1.31611 0.85670 0.78135 0.78969 0.78717 1.19541 1.22914 1.18318 1.21693 0.95822 0.86676 0.95508 0.89550 0.94055 0.93156 0.89302 0.87139 0.73546 0.87257 0.86271 0.91880 0.91874 0.88804 0.88236 0.90538 0.94920 0.95007 0.92595 0.96647 0.94959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.80 71.98 0.71 -1.86 16 2 C 0.09 1.95 5.70 86.38 0.49 2.44 16 3 N -0.58 -17.48 2.55 -795.10 -2.03 -19.51 16 4 C 0.59 19.90 6.70 86.66 0.58 20.48 16 5 O -0.55 -23.44 13.28 -4.07 -0.05 -23.50 16 6 C -0.09 -2.45 6.55 40.41 0.26 -2.19 16 7 C 0.03 0.71 11.95 67.32 0.80 1.52 16 8 O -0.19 -3.77 10.73 0.34 0.00 -3.77 16 9 C 0.19 3.48 7.93 88.39 0.70 4.18 16 10 C 0.16 1.59 6.56 71.24 0.47 2.06 16 11 O -0.42 -5.82 10.69 -148.98 -1.59 -7.42 16 12 C 0.03 0.16 11.01 113.37 1.25 1.41 16 13 N -0.44 -9.80 6.84 -293.04 -2.01 -11.81 16 14 C 0.15 5.02 3.44 46.18 0.16 5.18 16 15 H 0.13 3.54 7.81 -2.39 -0.02 3.52 16 16 C -0.13 -4.89 6.40 31.99 0.20 -4.69 16 17 C 0.11 5.31 4.85 86.86 0.42 5.73 16 18 N -0.62 -33.18 3.04 -691.99 -2.10 -35.29 16 19 C -0.24 -15.35 10.53 84.03 0.88 -14.47 16 20 H 0.04 2.63 8.06 -2.91 -0.02 2.61 16 21 C -0.03 -1.96 5.45 84.86 0.46 -1.49 16 22 N -0.96 -63.83 13.97 21.65 0.30 -63.53 16 23 Si 0.96 49.02 24.48 68.60 1.68 50.70 16 24 H -0.27 -13.04 6.99 99.48 0.70 -12.35 16 25 H -0.30 -15.25 7.11 99.48 0.71 -14.54 16 26 H -0.26 -12.45 6.84 99.48 0.68 -11.77 16 27 C 0.13 5.80 6.52 86.73 0.57 6.36 16 28 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.04 0.85 7.34 -2.38 -0.02 0.83 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 1.61 7.85 -2.38 -0.02 1.59 16 32 H 0.11 2.50 5.11 -2.38 -0.01 2.49 16 33 H 0.25 4.58 8.06 -2.91 -0.02 4.56 16 34 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 36 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 37 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 40 H 0.08 3.17 5.63 -2.39 -0.01 3.16 16 41 H 0.03 1.64 7.76 -2.39 -0.02 1.62 16 42 H 0.03 1.42 5.36 -2.39 -0.01 1.41 16 43 H 0.27 16.56 8.31 -92.71 -0.77 15.79 16 44 H 0.02 0.77 6.44 -2.39 -0.02 0.75 16 45 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 Total: -1.00 -84.85 360.89 3.13 -81.72 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 0.96 Total: 7.73 kcal Atomic # 6 Polarization: 16.70 SS G_CDS: 7.96 Total: 24.66 kcal Atomic # 7 Polarization: -124.30 SS G_CDS: -5.83 Total: -130.13 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -1.64 Total: -34.68 kcal Atomic # 14 Polarization: 49.02 SS G_CDS: 1.68 Total: 50.70 kcal Total: -84.85 3.13 -81.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034002520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.612 kcal (2) G-P(sol) polarization free energy of solvation -84.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds