Wall clock time and date at job start Tue Mar 31 2020 14:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47490 * 2 1 4 4 C 1.34777 * 120.00184 * 271.29352 * 3 2 1 5 5 O 1.21610 * 120.00304 * 185.61815 * 4 3 2 6 6 C 1.47408 * 119.99769 * 5.61520 * 4 3 2 7 7 C 1.37362 * 128.56248 * 7.01308 * 6 4 3 8 8 O 1.33488 * 106.33937 * 179.97438 * 7 6 4 9 9 N 1.20665 * 113.15821 * 0.02562 * 8 7 6 10 10 C 1.30019 * 112.29619 * 359.73144 * 9 8 7 11 11 C 1.50696 * 127.33114 * 180.27480 * 10 9 8 12 12 O 1.42905 * 109.46927 * 270.15092 * 11 10 9 13 13 C 1.42905 * 113.99542 * 179.97438 * 12 11 10 14 14 C 1.46501 * 120.00262 * 91.29111 * 3 2 1 15 15 H 1.09007 * 110.88307 * 3.87933 * 14 3 2 16 16 C 1.55159 * 111.00297 * 240.00596 * 14 3 2 17 17 C 1.54328 * 102.93847 * 206.38041 * 16 14 3 18 18 N 1.47026 * 107.27079 * 22.19504 * 17 16 14 19 19 C 1.36938 * 125.64907 * 181.02461 * 18 17 16 20 20 H 1.08000 * 120.00040 * 185.17169 * 19 18 17 21 21 C 1.38805 * 119.99808 * 4.88494 * 19 18 17 22 22 N 1.31618 * 120.00371 * 353.18475 * 21 19 18 23 23 Si 1.86806 * 119.99974 * 173.17673 * 21 19 18 24 24 H 1.48499 * 109.46716 * 94.99095 * 23 21 19 25 25 H 1.48497 * 109.47050 * 214.98778 * 23 21 19 26 26 H 1.48496 * 109.47105 * 334.99192 * 23 21 19 27 27 C 1.47424 * 108.70406 * 1.28134 * 18 17 16 28 28 H 1.09003 * 109.47255 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47471 * 300.00408 * 1 2 3 30 30 H 1.09006 * 109.47197 * 59.99994 * 1 2 3 31 31 H 1.09001 * 109.47471 * 239.99592 * 2 1 3 32 32 H 1.09006 * 109.47197 * 120.00006 * 2 1 3 33 33 H 1.08002 * 126.82771 * 359.96502 * 7 6 4 34 34 H 1.09001 * 109.47727 * 30.14721 * 11 10 9 35 35 H 1.08996 * 109.47353 * 150.15074 * 11 10 9 36 36 H 1.09003 * 109.46787 * 179.97438 * 13 12 11 37 37 H 1.08997 * 109.47747 * 299.99967 * 13 12 11 38 38 H 1.09002 * 109.47116 * 60.00051 * 13 12 11 39 39 H 1.08995 * 110.72313 * 88.02170 * 16 14 3 40 40 H 1.08997 * 110.87130 * 324.81044 * 16 14 3 41 41 H 1.08993 * 109.88774 * 262.77232 * 17 16 14 42 42 H 1.09003 * 109.88058 * 141.60540 * 17 16 14 43 43 H 0.97001 * 120.00469 * 179.97438 * 22 21 19 44 44 H 1.09004 * 110.36856 * 94.48364 * 27 18 17 45 45 H 1.08995 * 110.36917 * 216.80939 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2182 2.0253 -1.1669 5 8 2.7193 3.1334 -1.1718 6 6 1.8294 1.3867 -2.4373 7 6 1.1396 0.2147 -2.6305 8 8 1.0312 0.0561 -3.9515 9 7 1.5474 0.9472 -4.5803 10 6 2.0798 1.8498 -3.8107 11 6 2.8018 3.1025 -4.2355 12 8 4.1948 2.8215 -4.3863 13 6 4.9748 3.9489 -4.7898 14 6 2.2896 2.0623 1.2684 15 1 2.1438 1.3865 2.1112 16 6 1.4114 3.3329 1.4161 17 6 2.2517 4.2267 2.3525 18 7 3.6472 3.7752 2.2506 19 6 4.7077 4.2984 2.9411 20 1 5.7099 3.9527 2.7347 21 6 4.4953 5.2772 3.9021 22 7 3.2967 5.7986 4.0567 23 14 5.9105 5.8544 4.9762 24 1 6.5191 7.0712 4.3811 25 1 5.4035 6.1689 6.3360 26 1 6.9337 4.7819 5.0651 27 6 3.7167 2.6702 1.2772 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 0.7604 -0.4470 -1.8657 34 1 2.3967 3.4511 -5.1854 35 1 2.6669 3.8744 -3.4778 36 1 6.0200 3.6534 -4.8815 37 1 4.6146 4.3146 -5.7513 38 1 4.8849 4.7386 -4.0439 39 1 0.4531 3.0883 1.8741 40 1 1.2637 3.8172 0.4509 41 1 1.9017 4.1203 3.3792 42 1 2.1750 5.2677 2.0386 43 1 3.1482 6.4824 4.7285 44 1 3.9755 3.0507 0.2891 45 1 4.4439 1.9253 1.6002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034012953.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:05 Heat of formation + Delta-G solvation = 22.551411 kcal Electronic energy + Delta-G solvation = -28773.531900 eV Core-core repulsion = 24796.282209 eV Total energy + Delta-G solvation = -3977.249691 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.11654 -41.41777 -39.05419 -38.47208 -37.15862 -35.18161 -34.46789 -33.05722 -31.61270 -30.83614 -29.52732 -28.83112 -26.93061 -26.56165 -25.53035 -24.07210 -22.94544 -22.23796 -21.98023 -20.53074 -18.96338 -18.92165 -18.65281 -18.24360 -17.38782 -16.99609 -16.87911 -16.65706 -16.43548 -16.02325 -15.80355 -15.69740 -15.24941 -14.62468 -14.36187 -14.18339 -13.95002 -13.66850 -13.57271 -13.41450 -13.18258 -12.97051 -12.75984 -12.74119 -12.60727 -12.53297 -12.33915 -12.17603 -12.06241 -12.01494 -11.83282 -11.59072 -11.29759 -10.92095 -10.75656 -10.70553 -10.58768 -9.71434 -8.82992 -7.85440 -5.19664 0.01061 0.47343 1.44674 1.46767 1.56484 1.63513 2.06172 2.16619 2.50362 2.59636 3.00975 3.29366 3.32960 3.53034 3.72450 3.73170 3.90878 3.95658 4.04725 4.10080 4.18772 4.24176 4.30990 4.40963 4.43884 4.48102 4.56635 4.62941 4.63905 4.72653 4.75544 4.89810 4.94732 4.97491 5.02891 5.19033 5.43133 5.45251 5.64731 5.68736 5.74982 5.96682 6.19410 6.37179 7.05221 7.09644 7.13852 7.77385 8.43243 9.25501 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014559 B = 0.003826 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.741412 B = 7317.111877 C = 8736.501982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.072 3.928 3 N -0.589 5.589 4 C 0.584 3.416 5 O -0.553 6.553 6 C -0.257 4.257 7 C 0.008 3.992 8 O 0.116 5.884 9 N -0.352 5.352 10 C 0.042 3.958 11 C 0.140 3.860 12 O -0.408 6.408 13 C 0.029 3.971 14 C 0.157 3.843 15 H 0.123 0.877 16 C -0.133 4.133 17 C 0.193 3.807 18 N -0.622 5.622 19 C -0.244 4.244 20 H 0.077 0.923 21 C -0.064 4.064 22 N -0.951 5.951 23 Si 0.979 3.021 24 H -0.290 1.290 25 H -0.289 1.289 26 H -0.267 1.267 27 C 0.114 3.886 28 H 0.115 0.885 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.288 0.712 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.064 0.936 38 H 0.039 0.961 39 H 0.088 0.912 40 H 0.054 0.946 41 H 0.023 0.977 42 H -0.008 1.008 43 H 0.247 0.753 44 H 0.035 0.965 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.410 -16.734 -14.446 23.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.049 4.049 3 N -0.321 5.321 4 C 0.373 3.627 5 O -0.432 6.432 6 C -0.265 4.265 7 C -0.073 4.073 8 O 0.052 5.948 9 N -0.057 5.057 10 C -0.120 4.120 11 C 0.063 3.937 12 O -0.327 6.327 13 C -0.067 4.067 14 C 0.052 3.948 15 H 0.140 0.860 16 C -0.172 4.172 17 C 0.068 3.932 18 N -0.349 5.349 19 C -0.373 4.373 20 H 0.095 0.905 21 C -0.257 4.257 22 N -0.599 5.599 23 Si 0.807 3.193 24 H -0.218 1.218 25 H -0.215 1.215 26 H -0.191 1.191 27 C -0.012 4.012 28 H 0.133 0.867 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.128 0.872 33 H 0.303 0.697 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.120 0.880 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.107 0.893 40 H 0.072 0.928 41 H 0.041 0.959 42 H 0.010 0.990 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.108 -16.350 -15.589 24.001 hybrid contribution 0.962 1.756 1.441 2.467 sum -7.146 -14.594 -14.148 21.545 Atomic orbital electron populations 1.22522 0.93750 1.05239 1.03278 1.22523 0.96107 0.80198 1.06057 1.47769 1.65051 1.15310 1.03952 1.17217 0.78087 0.84697 0.82722 1.90816 1.43837 1.21585 1.86949 1.22239 1.10391 0.99955 0.93940 1.28405 0.95809 0.96767 0.86296 1.84585 1.56074 1.36888 1.17287 1.73642 1.12361 0.98890 1.20774 1.24514 1.00562 0.98098 0.88833 1.20577 0.81247 0.90616 1.01268 1.87843 1.18106 1.36750 1.90020 1.22948 0.96277 0.88193 0.99258 1.22147 0.94102 0.93459 0.85050 0.85967 1.22978 0.98608 0.96194 0.99468 1.20801 0.83189 0.93797 0.95443 1.44627 1.04564 1.37879 1.47787 1.19429 0.87505 1.17220 1.13131 0.90521 1.25654 0.99565 0.99452 1.01000 1.70204 1.22118 1.30719 1.36905 0.85055 0.78359 0.77985 0.77886 1.21776 1.21475 1.19144 1.22176 0.95896 0.89830 0.93285 0.86697 0.91876 0.92068 0.87826 0.87157 0.69745 0.89653 0.90961 0.88036 0.91708 0.94233 0.89321 0.92753 0.95916 0.99005 0.94344 0.94685 0.94581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.55 8.82 71.98 0.63 -0.92 16 2 C 0.07 0.91 5.59 86.38 0.48 1.39 16 3 N -0.59 -15.21 2.56 -793.56 -2.03 -17.24 16 4 C 0.58 18.46 6.93 86.66 0.60 19.06 16 5 O -0.55 -23.31 11.74 -4.06 -0.05 -23.35 16 6 C -0.26 -6.48 6.25 -18.74 -0.12 -6.60 16 7 C 0.01 0.11 8.97 67.61 0.61 0.72 16 8 O 0.12 2.14 11.06 77.02 0.85 2.99 16 9 N -0.35 -8.77 12.01 -44.78 -0.54 -9.31 16 10 C 0.04 1.17 7.21 45.15 0.33 1.49 16 11 C 0.14 3.98 6.25 71.23 0.44 4.42 16 12 O -0.41 -12.46 10.69 -148.98 -1.59 -14.06 16 13 C 0.03 0.67 11.01 113.37 1.25 1.91 16 14 C 0.16 5.27 3.57 46.46 0.17 5.44 16 15 H 0.12 3.51 7.85 -2.38 -0.02 3.50 16 16 C -0.13 -5.22 6.33 31.79 0.20 -5.02 16 17 C 0.19 10.17 5.38 86.73 0.47 10.64 16 18 N -0.62 -34.32 3.39 -691.55 -2.35 -36.67 16 19 C -0.24 -14.52 10.27 84.03 0.86 -13.66 16 20 H 0.08 4.42 7.84 -2.91 -0.02 4.39 16 21 C -0.06 -3.78 5.48 84.86 0.46 -3.32 16 22 N -0.95 -59.24 10.36 21.65 0.22 -59.02 16 23 Si 0.98 47.30 29.56 68.60 2.03 49.33 16 24 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 26 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 27 C 0.11 5.15 6.58 86.93 0.57 5.72 16 28 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.56 6.26 -2.38 -0.01 0.54 16 31 H 0.10 0.88 4.90 -2.39 -0.01 0.87 16 32 H 0.11 1.08 7.90 -2.38 -0.02 1.06 16 33 H 0.29 1.46 3.55 -2.91 -0.01 1.45 16 34 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.07 2.31 7.02 -2.39 -0.02 2.29 16 36 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 40 H 0.05 2.29 6.46 -2.39 -0.02 2.28 16 41 H 0.02 1.28 7.31 -2.39 -0.02 1.26 16 42 H -0.01 -0.51 7.60 -2.39 -0.02 -0.53 16 43 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 44 H 0.04 1.78 5.33 -2.39 -0.01 1.77 16 45 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -84.07 356.77 4.52 -79.54 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: 1.02 Total: 6.50 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: 6.96 Total: 21.29 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -4.69 Total: -122.25 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -0.79 Total: -34.42 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -84.07 4.52 -79.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034012953.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.095 kcal (2) G-P(sol) polarization free energy of solvation -84.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds