Wall clock time and date at job start Tue Mar 31 2020 14:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.46818 * 2 1 4 4 C 1.34778 * 119.99845 * 93.12261 * 3 2 1 5 5 O 1.21612 * 119.99920 * 185.62115 * 4 3 2 6 6 C 1.47398 * 120.00361 * 5.62429 * 4 3 2 7 7 C 1.37357 * 128.56654 * 45.87514 * 6 4 3 8 8 O 1.33486 * 106.34617 * 179.97438 * 7 6 4 9 9 N 1.20653 * 113.15394 * 359.97438 * 8 7 6 10 10 C 1.30015 * 112.30568 * 0.02562 * 9 8 7 11 11 C 1.50698 * 127.33666 * 179.97438 * 10 9 8 12 12 O 1.42898 * 109.47195 * 270.02308 * 11 10 9 13 13 C 1.42901 * 113.99899 * 179.97438 * 12 11 10 14 14 C 1.46496 * 120.00296 * 273.11832 * 3 2 1 15 15 H 1.08998 * 110.64088 * 1.69215 * 14 3 2 16 16 C 1.55157 * 110.72267 * 125.02666 * 14 3 2 17 17 C 1.54909 * 101.58381 * 153.86897 * 16 14 3 18 18 N 1.47418 * 104.82993 * 322.98683 * 17 16 14 19 19 C 1.36937 * 125.64972 * 204.16522 * 18 17 16 20 20 H 1.08004 * 120.00138 * 144.16720 * 19 18 17 21 21 C 1.38815 * 120.00120 * 324.16474 * 19 18 17 22 22 N 1.31612 * 120.00182 * 168.07530 * 21 19 18 23 23 Si 1.86800 * 119.99581 * 348.08010 * 21 19 18 24 24 H 1.48505 * 109.47448 * 84.52062 * 23 21 19 25 25 H 1.48501 * 109.47156 * 204.51600 * 23 21 19 26 26 H 1.48495 * 109.47348 * 324.52096 * 23 21 19 27 27 C 1.47029 * 108.70738 * 24.13349 * 18 17 16 28 28 H 1.08999 * 109.47346 * 299.99352 * 1 2 3 29 29 H 1.08991 * 109.47597 * 59.99831 * 1 2 3 30 30 H 1.09003 * 109.47254 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47216 * 240.00255 * 2 1 3 32 32 H 1.09002 * 109.47154 * 119.99974 * 2 1 3 33 33 H 1.08008 * 126.82293 * 359.71168 * 7 6 4 34 34 H 1.09004 * 109.47168 * 30.02750 * 11 10 9 35 35 H 1.09001 * 109.46644 * 150.02264 * 11 10 9 36 36 H 1.08999 * 109.47190 * 180.02562 * 13 12 11 37 37 H 1.08996 * 109.47851 * 300.00421 * 13 12 11 38 38 H 1.09008 * 109.46877 * 60.00683 * 13 12 11 39 39 H 1.09002 * 111.00133 * 271.94421 * 16 14 3 40 40 H 1.09002 * 111.00441 * 35.79266 * 16 14 3 41 41 H 1.09000 * 110.36236 * 204.15491 * 17 16 14 42 42 H 1.08996 * 110.36886 * 81.82848 * 17 16 14 43 43 H 0.97002 * 119.99937 * 180.02562 * 22 21 19 44 44 H 1.08994 * 109.87929 * 239.52136 * 27 18 17 45 45 H 1.08994 * 109.88298 * 118.35200 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3027 1.9953 1.1655 5 8 2.6096 3.1721 1.1737 6 6 2.2421 1.2408 2.4303 7 6 2.7489 -0.0050 2.7093 8 8 2.4438 -0.2578 3.9840 9 7 1.8348 0.6394 4.5130 10 6 1.6246 1.6365 3.7054 11 6 0.9022 2.9233 4.0107 12 8 -0.4881 2.7699 3.7186 13 6 -1.2684 3.9392 3.9752 14 6 2.1973 2.0949 -1.2668 15 1 1.8955 1.4689 -2.1065 16 6 1.4074 3.4303 -1.2610 17 6 2.2227 4.2783 -2.2690 18 7 3.6276 3.9011 -2.0298 19 6 4.7213 4.6730 -2.3181 20 1 5.5823 4.6545 -1.6662 21 6 4.7236 5.4792 -3.4481 22 7 5.6606 6.3900 -3.6048 23 14 3.3966 5.2713 -4.7463 24 1 2.1945 6.0504 -4.3547 25 1 3.9012 5.7636 -6.0533 26 1 3.0389 3.8348 -4.8630 27 6 3.6600 2.5592 -1.4299 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.2839 -0.6530 2.0308 34 1 1.0270 3.1687 5.0654 35 1 1.3155 3.7257 3.3996 36 1 -2.3116 3.7413 3.7288 37 1 -1.1887 4.2053 5.0292 38 1 -0.9003 4.7631 3.3636 39 1 0.3861 3.2816 -1.6117 40 1 1.4164 3.8853 -0.2705 41 1 2.0771 5.3411 -2.0755 42 1 1.9331 4.0347 -3.2911 43 1 5.6619 6.9536 -4.3943 44 1 4.1467 2.6005 -0.4556 45 1 4.1959 1.8729 -2.0855 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034012955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:09 Heat of formation + Delta-G solvation = 33.109970 kcal Electronic energy + Delta-G solvation = -28908.010827 eV Core-core repulsion = 24931.218989 eV Total energy + Delta-G solvation = -3976.791838 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.17996 -40.21620 -38.17040 -37.09163 -35.75954 -34.18871 -32.66091 -32.01864 -30.68622 -29.36170 -28.60235 -27.77441 -26.03745 -25.12965 -24.06792 -23.14073 -21.68694 -21.20217 -20.61266 -19.29336 -18.03405 -17.70226 -17.17774 -16.96441 -16.51938 -16.03180 -15.81299 -15.52431 -15.17363 -14.97835 -14.45331 -14.21461 -13.87297 -13.58623 -13.47233 -12.97802 -12.83823 -12.74018 -12.61066 -12.24985 -12.02293 -11.83478 -11.78192 -11.67788 -11.31251 -11.25946 -11.01452 -10.90288 -10.86601 -10.38763 -10.25076 -10.03122 -10.00036 -9.86334 -9.60753 -9.31477 -8.61764 -8.49430 -6.72057 -5.90711 -3.35931 0.97544 1.46180 2.57353 2.81867 3.07375 3.38498 3.40915 3.47520 3.52176 3.97579 4.15385 4.44590 4.57763 4.69993 4.74780 4.93581 4.97820 5.00703 5.09412 5.13776 5.17990 5.19462 5.25431 5.35934 5.40941 5.44008 5.45658 5.50845 5.56097 5.59255 5.64553 5.94318 6.03645 6.12926 6.32971 6.37686 6.59619 6.71429 6.76750 6.90041 7.00939 7.39698 7.92002 7.98856 8.19994 8.41412 8.91958 9.73245 10.30482 11.25815 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.016169 B = 0.003796 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.325508 B = 7373.835095 C = 7681.840735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.096 3.904 3 N -0.597 5.597 4 C 0.590 3.410 5 O -0.494 6.494 6 C -0.221 4.221 7 C -0.022 4.022 8 O 0.106 5.894 9 N -0.339 5.339 10 C 0.059 3.941 11 C 0.138 3.862 12 O -0.386 6.386 13 C 0.033 3.967 14 C 0.136 3.864 15 H 0.095 0.905 16 C -0.146 4.146 17 C 0.117 3.883 18 N -0.601 5.601 19 C -0.239 4.239 20 H 0.082 0.918 21 C 0.030 3.970 22 N -0.913 5.913 23 Si 0.895 3.105 24 H -0.285 1.285 25 H -0.303 1.303 26 H -0.273 1.273 27 C 0.132 3.868 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.230 0.770 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.043 0.957 38 H 0.049 0.951 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.055 0.945 42 H 0.021 0.979 43 H 0.263 0.737 44 H 0.040 0.960 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.099 -15.392 12.842 23.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.027 4.027 3 N -0.330 5.330 4 C 0.376 3.624 5 O -0.368 6.368 6 C -0.229 4.229 7 C -0.103 4.103 8 O 0.041 5.959 9 N -0.043 5.043 10 C -0.103 4.103 11 C 0.061 3.939 12 O -0.304 6.304 13 C -0.064 4.064 14 C 0.033 3.967 15 H 0.113 0.887 16 C -0.185 4.185 17 C -0.008 4.008 18 N -0.328 5.328 19 C -0.367 4.367 20 H 0.100 0.900 21 C -0.170 4.170 22 N -0.556 5.556 23 Si 0.726 3.274 24 H -0.212 1.212 25 H -0.231 1.231 26 H -0.199 1.199 27 C 0.005 3.995 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.246 0.754 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.114 0.886 41 H 0.074 0.926 42 H 0.039 0.961 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -13.169 -14.965 13.917 24.312 hybrid contribution -0.504 0.409 -1.565 1.694 sum -13.673 -14.555 12.352 23.482 Atomic orbital electron populations 1.22181 0.95576 1.02096 1.02968 1.21801 0.95027 0.82600 1.03244 1.47818 1.65340 1.14127 1.05721 1.16870 0.77823 0.86218 0.81531 1.90895 1.45356 1.14527 1.86008 1.22435 1.07310 0.96405 0.96712 1.26382 1.00614 0.96481 0.86836 1.84570 1.53372 1.35751 1.22206 1.73632 1.11252 0.97957 1.21479 1.24272 1.00530 0.96833 0.88687 1.20603 0.81496 0.90849 1.00996 1.87888 1.17703 1.36866 1.87940 1.22793 0.95873 0.87798 0.99917 1.22220 0.97921 0.93318 0.83240 0.88696 1.23221 0.97098 0.95609 1.02607 1.21925 0.85740 0.98184 0.94960 1.44432 1.00953 1.13185 1.74205 1.18557 0.94372 1.18948 1.04840 0.90019 1.25424 0.96735 0.97863 0.96941 1.69764 1.34887 1.21704 1.29241 0.86709 0.81394 0.78072 0.81264 1.21160 1.23060 1.19899 1.21620 0.92326 0.88044 0.97470 0.92233 0.92005 0.91635 0.89855 0.90423 0.75367 0.91016 0.89314 0.89249 0.93800 0.93285 0.92266 0.88630 0.92644 0.96129 0.92677 0.94242 0.95242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 10.24 37.16 0.38 -1.10 16 2 C 0.10 0.86 6.01 -4.05 -0.02 0.83 16 3 N -0.60 -7.98 2.54 -165.29 -0.42 -8.40 16 4 C 0.59 9.05 6.70 -12.53 -0.08 8.97 16 5 O -0.49 -9.73 13.13 5.27 0.07 -9.66 16 6 C -0.22 -2.79 5.61 -102.89 -0.58 -3.37 16 7 C -0.02 -0.20 10.24 30.41 0.31 0.11 16 8 O 0.11 1.10 11.06 18.67 0.21 1.30 16 9 N -0.34 -4.28 12.01 34.78 0.42 -3.86 16 10 C 0.06 0.78 7.22 -79.77 -0.58 0.20 16 11 C 0.14 1.70 6.54 36.00 0.24 1.94 16 12 O -0.39 -4.86 10.69 -35.23 -0.38 -5.24 16 13 C 0.03 0.29 11.01 101.05 1.11 1.41 16 14 C 0.14 2.21 3.44 -66.10 -0.23 1.98 16 15 H 0.10 1.34 7.92 -51.93 -0.41 0.93 16 16 C -0.15 -2.66 6.39 -24.58 -0.16 -2.82 16 17 C 0.12 2.65 4.91 -2.53 -0.01 2.63 16 18 N -0.60 -15.20 2.99 -170.07 -0.51 -15.70 16 19 C -0.24 -7.08 10.55 -15.06 -0.16 -7.24 16 20 H 0.08 2.62 8.06 -52.48 -0.42 2.20 16 21 C 0.03 0.89 5.48 -17.43 -0.10 0.80 16 22 N -0.91 -28.80 13.97 55.49 0.78 -28.03 16 23 Si 0.90 23.13 24.52 -169.99 -4.17 18.96 16 24 H -0.28 -7.15 7.09 56.52 0.40 -6.75 16 25 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 26 H -0.27 -6.84 6.65 56.52 0.38 -6.46 16 27 C 0.13 2.73 6.52 -3.06 -0.02 2.71 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.61 8.03 -51.93 -0.42 0.20 16 32 H 0.08 0.54 4.11 -51.93 -0.21 0.33 16 33 H 0.23 1.04 7.22 -52.48 -0.38 0.66 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.18 7.78 -51.93 -0.40 0.77 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.10 1.90 5.61 -51.93 -0.29 1.61 16 41 H 0.06 1.34 7.89 -51.93 -0.41 0.93 16 42 H 0.02 0.48 5.11 -51.93 -0.27 0.21 16 43 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 44 H 0.04 0.88 6.45 -51.93 -0.33 0.54 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 362.39 15.07 5.46 5.46 Total: -1.00 -36.39 362.39 -4.95 -41.34 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -6.51 Total: -3.24 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: 0.11 Total: 7.06 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: 0.27 Total: -55.99 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.10 Total: -13.59 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -4.17 Total: 18.96 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.39 -4.95 -41.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034012955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.446 kcal (2) G-P(sol) polarization free energy of solvation -36.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds