Wall clock time and date at job start Tue Mar 31 2020 14:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.46818 * 2 1 4 4 C 1.34778 * 119.99845 * 93.12261 * 3 2 1 5 5 O 1.21612 * 119.99920 * 185.62115 * 4 3 2 6 6 C 1.47398 * 120.00361 * 5.62429 * 4 3 2 7 7 C 1.37357 * 128.56654 * 45.87514 * 6 4 3 8 8 O 1.33486 * 106.34617 * 179.97438 * 7 6 4 9 9 N 1.20653 * 113.15394 * 359.97438 * 8 7 6 10 10 C 1.30015 * 112.30568 * 0.02562 * 9 8 7 11 11 C 1.50698 * 127.33666 * 179.97438 * 10 9 8 12 12 O 1.42898 * 109.47195 * 270.02308 * 11 10 9 13 13 C 1.42901 * 113.99899 * 179.97438 * 12 11 10 14 14 C 1.46496 * 120.00296 * 273.11832 * 3 2 1 15 15 H 1.08998 * 110.64088 * 1.69215 * 14 3 2 16 16 C 1.55157 * 110.72267 * 125.02666 * 14 3 2 17 17 C 1.54909 * 101.58381 * 153.86897 * 16 14 3 18 18 N 1.47418 * 104.82993 * 322.98683 * 17 16 14 19 19 C 1.36937 * 125.64972 * 204.16522 * 18 17 16 20 20 H 1.08004 * 120.00138 * 144.16720 * 19 18 17 21 21 C 1.38815 * 120.00120 * 324.16474 * 19 18 17 22 22 N 1.31612 * 120.00182 * 168.07530 * 21 19 18 23 23 Si 1.86800 * 119.99581 * 348.08010 * 21 19 18 24 24 H 1.48505 * 109.47448 * 84.52062 * 23 21 19 25 25 H 1.48501 * 109.47156 * 204.51600 * 23 21 19 26 26 H 1.48495 * 109.47348 * 324.52096 * 23 21 19 27 27 C 1.47029 * 108.70738 * 24.13349 * 18 17 16 28 28 H 1.08999 * 109.47346 * 299.99352 * 1 2 3 29 29 H 1.08991 * 109.47597 * 59.99831 * 1 2 3 30 30 H 1.09003 * 109.47254 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47216 * 240.00255 * 2 1 3 32 32 H 1.09002 * 109.47154 * 119.99974 * 2 1 3 33 33 H 1.08008 * 126.82293 * 359.71168 * 7 6 4 34 34 H 1.09004 * 109.47168 * 30.02750 * 11 10 9 35 35 H 1.09001 * 109.46644 * 150.02264 * 11 10 9 36 36 H 1.08999 * 109.47190 * 180.02562 * 13 12 11 37 37 H 1.08996 * 109.47851 * 300.00421 * 13 12 11 38 38 H 1.09008 * 109.46877 * 60.00683 * 13 12 11 39 39 H 1.09002 * 111.00133 * 271.94421 * 16 14 3 40 40 H 1.09002 * 111.00441 * 35.79266 * 16 14 3 41 41 H 1.09000 * 110.36236 * 204.15491 * 17 16 14 42 42 H 1.08996 * 110.36886 * 81.82848 * 17 16 14 43 43 H 0.97002 * 119.99937 * 180.02562 * 22 21 19 44 44 H 1.08994 * 109.87929 * 239.52136 * 27 18 17 45 45 H 1.08994 * 109.88298 * 118.35200 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3027 1.9953 1.1655 5 8 2.6096 3.1721 1.1737 6 6 2.2421 1.2408 2.4303 7 6 2.7489 -0.0050 2.7093 8 8 2.4438 -0.2578 3.9840 9 7 1.8348 0.6394 4.5130 10 6 1.6246 1.6365 3.7054 11 6 0.9022 2.9233 4.0107 12 8 -0.4881 2.7699 3.7186 13 6 -1.2684 3.9392 3.9752 14 6 2.1973 2.0949 -1.2668 15 1 1.8955 1.4689 -2.1065 16 6 1.4074 3.4303 -1.2610 17 6 2.2227 4.2783 -2.2690 18 7 3.6276 3.9011 -2.0298 19 6 4.7213 4.6730 -2.3181 20 1 5.5823 4.6545 -1.6662 21 6 4.7236 5.4792 -3.4481 22 7 5.6606 6.3900 -3.6048 23 14 3.3966 5.2713 -4.7463 24 1 2.1945 6.0504 -4.3547 25 1 3.9012 5.7636 -6.0533 26 1 3.0389 3.8348 -4.8630 27 6 3.6600 2.5592 -1.4299 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.2839 -0.6530 2.0308 34 1 1.0270 3.1687 5.0654 35 1 1.3155 3.7257 3.3996 36 1 -2.3116 3.7413 3.7288 37 1 -1.1887 4.2053 5.0292 38 1 -0.9003 4.7631 3.3636 39 1 0.3861 3.2816 -1.6117 40 1 1.4164 3.8853 -0.2705 41 1 2.0771 5.3411 -2.0755 42 1 1.9331 4.0347 -3.2911 43 1 5.6619 6.9536 -4.3943 44 1 4.1467 2.6005 -0.4556 45 1 4.1959 1.8729 -2.0855 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034012955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:08 Heat of formation + Delta-G solvation = 5.999475 kcal Electronic energy + Delta-G solvation = -28909.186426 eV Core-core repulsion = 24931.218989 eV Total energy + Delta-G solvation = -3977.967437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.08835 -41.42935 -39.09380 -38.65430 -36.90906 -35.17220 -34.48839 -33.19700 -31.95118 -30.88115 -29.59955 -29.18298 -26.94826 -26.52338 -25.48817 -24.04328 -22.83440 -22.50547 -22.19528 -20.44887 -19.10366 -18.89478 -18.58709 -18.16126 -17.40063 -17.29520 -17.06731 -16.92008 -16.50554 -16.05424 -15.83064 -15.42513 -15.13745 -14.81489 -14.68607 -14.58976 -14.18683 -13.89150 -13.65989 -13.48081 -13.32202 -13.07704 -12.90922 -12.71934 -12.63274 -12.59022 -12.55558 -12.35003 -12.13588 -12.05735 -11.72592 -11.59997 -11.29225 -10.94481 -10.81589 -10.80791 -10.59493 -9.69222 -8.79471 -8.21320 -5.65334 0.15053 0.51275 1.32388 1.37733 1.49921 1.57293 1.82272 2.16749 2.41071 2.54200 3.05556 3.07171 3.28149 3.41146 3.53476 3.76709 3.86764 3.91025 4.03470 4.05156 4.19464 4.21925 4.38465 4.40476 4.42642 4.45627 4.50621 4.54419 4.58140 4.63914 4.75654 4.79940 4.82832 4.93788 4.97343 5.02294 5.09132 5.27858 5.39358 5.68161 5.81902 5.92013 6.11016 6.33612 6.78656 7.06124 7.10555 7.49432 8.14189 8.99433 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.016169 B = 0.003796 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.325508 B = 7373.835095 C = 7681.840735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.090 3.910 3 N -0.589 5.589 4 C 0.589 3.411 5 O -0.552 6.552 6 C -0.254 4.254 7 C 0.018 3.982 8 O 0.118 5.882 9 N -0.353 5.353 10 C 0.040 3.960 11 C 0.139 3.861 12 O -0.404 6.404 13 C 0.027 3.973 14 C 0.152 3.848 15 H 0.135 0.865 16 C -0.136 4.136 17 C 0.111 3.889 18 N -0.620 5.620 19 C -0.243 4.243 20 H 0.033 0.967 21 C -0.028 4.028 22 N -0.961 5.961 23 Si 0.964 3.036 24 H -0.274 1.274 25 H -0.303 1.303 26 H -0.251 1.251 27 C 0.129 3.871 28 H 0.035 0.965 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.279 0.721 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.060 0.940 38 H 0.043 0.957 39 H 0.096 0.904 40 H 0.072 0.928 41 H 0.028 0.972 42 H 0.034 0.966 43 H 0.265 0.735 44 H 0.017 0.983 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.503 -19.134 12.124 27.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.031 4.031 3 N -0.321 5.321 4 C 0.377 3.623 5 O -0.430 6.430 6 C -0.261 4.261 7 C -0.062 4.062 8 O 0.052 5.948 9 N -0.057 5.057 10 C -0.121 4.121 11 C 0.062 3.938 12 O -0.323 6.323 13 C -0.069 4.069 14 C 0.049 3.951 15 H 0.152 0.848 16 C -0.175 4.175 17 C -0.014 4.014 18 N -0.347 5.347 19 C -0.372 4.372 20 H 0.051 0.949 21 C -0.223 4.223 22 N -0.607 5.607 23 Si 0.791 3.209 24 H -0.200 1.200 25 H -0.231 1.231 26 H -0.175 1.175 27 C 0.003 3.997 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.110 0.890 31 H 0.130 0.870 32 H 0.117 0.883 33 H 0.294 0.706 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.124 0.876 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.114 0.886 40 H 0.091 0.909 41 H 0.046 0.954 42 H 0.051 0.949 43 H 0.074 0.926 44 H 0.035 0.965 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -15.622 -18.774 13.235 27.779 hybrid contribution 0.302 1.545 -1.198 1.978 sum -15.320 -17.229 12.037 26.008 Atomic orbital electron populations 1.22143 0.95241 1.03384 1.01599 1.22196 0.95218 0.79953 1.05729 1.47839 1.64540 1.15681 1.04046 1.17233 0.76620 0.85676 0.82762 1.90875 1.47982 1.17191 1.86936 1.22207 1.10134 0.98118 0.95678 1.27164 0.97696 0.95159 0.86227 1.84559 1.52549 1.34936 1.22713 1.73628 1.11989 0.98217 1.21841 1.24449 1.01147 0.97255 0.89268 1.20540 0.81565 0.90441 1.01286 1.87851 1.17768 1.38378 1.88267 1.22992 0.96215 0.86777 1.00930 1.22035 0.93901 0.93387 0.85819 0.84777 1.23105 0.98532 0.95712 1.00145 1.22022 0.84915 0.97628 0.96794 1.44513 1.01004 1.14934 1.74260 1.18373 0.94652 1.19904 1.04247 0.94883 1.26159 0.99706 0.97276 0.99179 1.69921 1.37657 1.22987 1.30099 0.85613 0.78460 0.79262 0.77566 1.19964 1.23056 1.17528 1.21725 0.95922 0.86116 0.95908 0.94559 0.92423 0.89006 0.86965 0.88288 0.70552 0.89736 0.91300 0.87578 0.92178 0.93823 0.88591 0.90908 0.95366 0.94860 0.92592 0.96528 0.94318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 71.98 0.74 -1.46 16 2 C 0.09 1.16 6.01 86.38 0.52 1.68 16 3 N -0.59 -14.13 2.54 -795.12 -2.02 -16.15 16 4 C 0.59 17.69 6.70 86.66 0.58 18.27 16 5 O -0.55 -22.62 13.13 -4.07 -0.05 -22.68 16 6 C -0.25 -6.04 5.61 -18.75 -0.11 -6.15 16 7 C 0.02 0.26 10.24 67.61 0.69 0.96 16 8 O 0.12 2.10 11.06 77.06 0.85 2.96 16 9 N -0.35 -8.41 12.01 -44.78 -0.54 -8.95 16 10 C 0.04 1.05 7.22 45.16 0.33 1.37 16 11 C 0.14 3.54 6.54 71.24 0.47 4.01 16 12 O -0.40 -10.21 10.69 -148.98 -1.59 -11.81 16 13 C 0.03 0.47 11.01 113.37 1.25 1.72 16 14 C 0.15 4.52 3.44 46.18 0.16 4.68 16 15 H 0.13 3.03 7.92 -2.39 -0.02 3.01 16 16 C -0.14 -4.71 6.39 31.99 0.20 -4.51 16 17 C 0.11 4.92 4.91 86.86 0.43 5.34 16 18 N -0.62 -31.73 2.99 -691.99 -2.07 -33.80 16 19 C -0.24 -14.99 10.55 84.03 0.89 -14.11 16 20 H 0.03 2.30 8.06 -2.91 -0.02 2.28 16 21 C -0.03 -1.72 5.48 84.86 0.47 -1.26 16 22 N -0.96 -63.02 13.97 21.65 0.30 -62.72 16 23 Si 0.96 47.82 24.52 68.60 1.68 49.50 16 24 H -0.27 -12.99 7.09 99.48 0.71 -12.28 16 25 H -0.30 -14.90 7.11 99.48 0.71 -14.20 16 26 H -0.25 -11.46 6.65 99.48 0.66 -10.79 16 27 C 0.13 5.28 6.52 86.73 0.57 5.84 16 28 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.11 0.92 8.03 -2.38 -0.02 0.90 16 32 H 0.10 0.84 4.11 -2.39 -0.01 0.83 16 33 H 0.28 0.89 7.22 -2.91 -0.02 0.86 16 34 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.07 1.99 7.78 -2.39 -0.02 1.97 16 36 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.07 2.92 5.61 -2.39 -0.01 2.91 16 41 H 0.03 1.37 7.89 -2.39 -0.02 1.35 16 42 H 0.03 1.42 5.11 -2.39 -0.01 1.41 16 43 H 0.27 16.31 8.31 -92.71 -0.77 15.54 16 44 H 0.02 0.75 6.45 -2.39 -0.02 0.74 16 45 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -86.20 362.39 4.70 -81.50 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 0.96 Total: 5.75 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: 7.17 Total: 16.40 kcal Atomic # 7 Polarization: -117.30 SS G_CDS: -4.32 Total: -121.62 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.79 Total: -31.53 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 1.68 Total: 49.50 kcal Total: -86.20 4.70 -81.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034012955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.496 kcal (2) G-P(sol) polarization free energy of solvation -86.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds