Wall clock time and date at job start Tue Mar 31 2020 14:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.47232 * 2 1 4 4 C 1.35348 * 116.99913 * 179.97438 * 3 2 1 5 5 N 1.30548 * 125.44745 * 180.02562 * 4 3 2 6 6 C 1.36331 * 108.38539 * 180.02562 * 5 4 3 7 7 C 1.47367 * 126.41615 * 179.97438 * 6 5 4 8 8 O 1.21619 * 119.99983 * 180.02562 * 7 6 5 9 9 N 1.34780 * 119.99814 * 0.02628 * 7 6 5 10 10 C 1.46496 * 120.00111 * 179.97438 * 9 7 6 11 11 H 1.09001 * 108.45973 * 327.28791 * 10 9 7 12 12 C 1.52522 * 108.52485 * 209.71888 * 10 9 7 13 13 C 1.50124 * 105.41906 * 149.35148 * 12 10 9 14 14 C 1.54842 * 110.81748 * 97.67991 * 13 12 10 15 15 C 1.54400 * 110.07145 * 321.07689 * 14 13 12 16 16 N 1.43427 * 116.39212 * 318.65267 * 15 14 13 17 17 C 1.36934 * 120.53682 * 271.72869 * 16 15 14 18 18 H 1.08003 * 120.00135 * 145.95896 * 17 16 15 19 19 C 1.38810 * 119.99996 * 325.95496 * 17 16 15 20 20 N 1.31620 * 120.00163 * 331.48580 * 19 17 16 21 21 Si 1.86804 * 120.00321 * 151.48096 * 19 17 16 22 22 H 1.48497 * 109.46972 * 270.00657 * 21 19 17 23 23 H 1.48494 * 109.47349 * 150.00254 * 21 19 17 24 24 H 1.48504 * 109.46591 * 29.99908 * 21 19 17 25 25 C 1.46242 * 108.52220 * 84.99701 * 10 9 7 26 26 C 1.35920 * 107.17527 * 0.26252 * 6 5 4 27 27 O 1.34211 * 125.44451 * 0.02835 * 4 3 2 28 28 H 1.09000 * 109.47426 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46886 * 300.00302 * 1 2 3 30 30 H 1.09000 * 109.46915 * 59.99815 * 1 2 3 31 31 H 1.09000 * 109.46886 * 239.99698 * 2 1 3 32 32 H 1.09000 * 109.46915 * 120.00185 * 2 1 3 33 33 H 0.97005 * 119.99877 * 359.97438 * 9 7 6 34 34 H 1.09007 * 110.24852 * 268.32473 * 12 10 9 35 35 H 1.09000 * 110.24996 * 30.23427 * 12 10 9 36 36 H 1.08994 * 109.20840 * 218.03206 * 13 12 10 37 37 H 1.08997 * 109.20190 * 337.38408 * 13 12 10 38 38 H 1.08998 * 109.35446 * 81.34462 * 14 13 12 39 39 H 1.09003 * 109.35890 * 200.92886 * 14 13 12 40 40 H 1.09001 * 107.89339 * 196.92740 * 15 14 13 41 41 H 1.09010 * 108.09974 * 80.53499 * 15 14 13 42 42 H 0.97005 * 119.99731 * 354.21973 * 20 19 17 43 43 H 1.09000 * 109.84427 * 60.14783 * 25 10 9 44 44 H 1.09000 * 109.84912 * 299.15841 * 25 10 9 45 45 H 1.07988 * 126.45955 * 179.73783 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3482 1.5246 0.0005 5 7 3.9595 2.6781 0.0011 6 6 5.3040 2.4523 0.0009 7 6 6.3632 3.4768 0.0009 8 8 7.5325 3.1426 0.0003 9 7 6.0360 4.7843 0.0015 10 6 7.0888 5.8029 0.0021 11 1 7.9418 5.4174 0.5606 12 6 6.5638 7.0422 0.7196 13 6 7.7681 7.6773 1.3522 14 6 8.3109 8.8279 0.4695 15 6 8.2190 8.4400 -1.0221 16 7 8.5783 7.0916 -1.3535 17 6 9.8783 6.7675 -1.6364 18 1 10.2672 5.8000 -1.3549 19 6 10.6964 7.6823 -2.2850 20 7 10.1720 8.5687 -3.1046 21 14 12.5415 7.6556 -1.9946 22 1 12.8755 8.5427 -0.8515 23 1 13.2415 8.1341 -3.2137 24 1 12.9741 6.2685 -1.6876 25 6 7.5068 6.0397 -1.3792 26 6 5.4847 1.1051 -0.0057 27 8 4.2630 0.5426 0.0005 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.1032 5.0509 0.0017 34 1 6.1077 7.7272 0.0048 35 1 5.8398 6.7577 1.4832 36 1 7.4926 8.0741 2.3292 37 1 8.5463 6.9245 1.4774 38 1 7.7224 9.7280 0.6473 39 1 9.3517 9.0221 0.7288 40 1 8.8679 9.1123 -1.5836 41 1 7.1946 8.6099 -1.3538 42 1 9.2271 8.5302 -3.3206 43 1 6.6587 6.3898 -1.9676 44 1 7.9020 5.1194 -1.8092 45 1 6.4308 0.5846 -0.0116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034287799.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:32 Heat of formation + Delta-G solvation = -18.504313 kcal Electronic energy + Delta-G solvation = -27651.764175 eV Core-core repulsion = 23672.734174 eV Total energy + Delta-G solvation = -3979.030001 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.66838 -39.82869 -39.27392 -37.77820 -35.15467 -34.67201 -33.20488 -32.42471 -30.96683 -30.06668 -29.45129 -26.08553 -24.76601 -24.39221 -23.96327 -22.90339 -22.23822 -20.63208 -20.22723 -19.28298 -18.88744 -17.86382 -17.38404 -17.07254 -16.57199 -16.01057 -15.97186 -15.31977 -14.87538 -14.50613 -14.17624 -14.07182 -13.68586 -13.57956 -13.42843 -13.37950 -13.27356 -12.84824 -12.48780 -12.29799 -12.26074 -11.81709 -11.67000 -11.16684 -11.08283 -11.00703 -10.66656 -10.62231 -10.32006 -10.16677 -10.04447 -9.96850 -9.93720 -9.65315 -9.19798 -8.98076 -8.78518 -8.25426 -6.76997 -5.94276 -3.27381 0.95013 1.59548 1.88128 2.42998 3.25800 3.38974 3.57027 3.58118 3.75254 4.26259 4.27241 4.29606 4.59191 4.64052 4.69242 4.87089 5.14327 5.16613 5.16959 5.25771 5.30458 5.45655 5.46004 5.52038 5.62008 5.64764 6.02989 6.04264 6.10772 6.27586 6.31084 6.35307 6.51563 6.60731 6.68512 6.76041 6.84624 6.91354 6.98751 7.15007 7.25813 7.41420 7.76973 8.16949 8.36963 8.67383 9.17986 9.90243 10.35033 11.21600 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.022496 B = 0.002638 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.383721 B =10609.876754 C =11173.085149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.246 6.246 4 C 0.380 3.620 5 N -0.455 5.455 6 C -0.041 4.041 7 C 0.596 3.404 8 O -0.528 6.528 9 N -0.708 5.708 10 C 0.133 3.867 11 H 0.089 0.911 12 C -0.118 4.118 13 C -0.106 4.106 14 C -0.138 4.138 15 C 0.137 3.863 16 N -0.580 5.580 17 C -0.345 4.345 18 H 0.053 0.947 19 C -0.021 4.021 20 N -0.903 5.903 21 Si 1.063 2.937 22 H -0.293 1.293 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.127 3.873 26 C -0.001 4.001 27 O -0.227 6.227 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.404 0.596 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.044 0.956 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.018 0.982 42 H 0.269 0.731 43 H 0.028 0.972 44 H 0.065 0.935 45 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.519 -15.485 8.327 25.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.154 6.154 4 C 0.134 3.866 5 N -0.201 5.201 6 C -0.160 4.160 7 C 0.380 3.620 8 O -0.405 6.405 9 N -0.359 5.359 10 C 0.029 3.971 11 H 0.107 0.893 12 C -0.156 4.156 13 C -0.144 4.144 14 C -0.179 4.179 15 C 0.009 3.991 16 N -0.302 5.302 17 C -0.474 4.474 18 H 0.070 0.930 19 C -0.224 4.224 20 N -0.542 5.542 21 Si 0.893 3.107 22 H -0.220 1.220 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.002 3.998 26 C -0.073 4.073 27 O -0.118 6.118 28 H 0.106 0.894 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.238 0.762 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.037 0.963 42 H 0.080 0.920 43 H 0.046 0.954 44 H 0.084 0.916 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -16.762 -14.296 7.936 23.416 hybrid contribution -1.671 -1.637 0.445 2.382 sum -18.433 -15.933 8.381 25.766 Atomic orbital electron populations 1.21813 0.91222 1.03647 1.04241 1.23055 0.96851 0.79407 1.03066 1.86379 1.09003 1.30773 1.89265 1.23288 0.83440 0.81660 0.98236 1.71109 1.04024 1.21503 1.23451 1.21876 0.90153 0.94230 1.09733 1.16686 0.86067 0.82050 0.77219 1.90883 1.17748 1.81270 1.50605 1.46326 1.11310 1.05178 1.73047 1.21026 0.89366 0.86321 1.00383 0.89292 1.21294 0.98239 0.96595 0.99453 1.21306 0.96801 0.99052 0.97282 1.22719 1.00029 0.95946 0.99200 1.20423 0.97580 0.88565 0.92557 1.43811 1.04110 1.03805 1.78480 1.19918 0.86658 1.04514 1.36286 0.92953 1.25849 1.05461 0.97481 0.93569 1.70741 1.15392 1.39654 1.28450 0.83548 0.75615 0.75502 0.76038 1.21999 1.21715 1.21727 1.20716 0.91974 0.94367 0.92780 1.25001 0.85731 0.92979 1.03626 1.84385 1.16293 1.39153 1.72010 0.89444 0.90956 0.90921 0.90773 0.90814 0.76164 0.90909 0.92016 0.93760 0.91639 0.93484 0.92656 0.90886 0.96344 0.92001 0.95362 0.91629 0.74711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 10.28 37.16 0.38 -0.18 16 2 C 0.05 0.29 6.38 37.16 0.24 0.53 16 3 O -0.25 -2.41 10.19 -40.97 -0.42 -2.83 16 4 C 0.38 4.48 8.98 52.22 0.47 4.95 16 5 N -0.45 -6.34 11.10 -11.71 -0.13 -6.47 16 6 C -0.04 -0.58 6.99 -82.98 -0.58 -1.16 16 7 C 0.60 10.10 7.73 -12.54 -0.10 10.00 16 8 O -0.53 -10.63 16.42 5.26 0.09 -10.54 16 9 N -0.71 -11.48 4.87 -58.32 -0.28 -11.76 16 10 C 0.13 2.48 2.01 -71.39 -0.14 2.34 16 11 H 0.09 1.92 6.22 -51.93 -0.32 1.59 16 12 C -0.12 -1.94 5.25 -28.41 -0.15 -2.09 16 13 C -0.11 -1.89 5.65 -27.19 -0.15 -2.04 16 14 C -0.14 -2.75 6.40 -25.03 -0.16 -2.91 16 15 C 0.14 3.19 4.45 -4.93 -0.02 3.17 16 16 N -0.58 -14.60 2.37 -175.40 -0.41 -15.01 16 17 C -0.34 -9.79 9.43 -15.06 -0.14 -9.93 16 18 H 0.05 1.56 7.97 -52.48 -0.42 1.14 16 19 C -0.02 -0.59 4.82 -17.43 -0.08 -0.68 16 20 N -0.90 -27.11 12.19 55.49 0.68 -26.44 16 21 Si 1.06 25.90 30.00 -169.99 -5.10 20.79 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 C 0.13 2.79 5.54 -5.20 -0.03 2.76 16 26 C 0.00 -0.02 11.93 29.90 0.36 0.34 16 27 O -0.23 -2.39 10.20 -17.80 -0.18 -2.57 16 28 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.40 5.77 8.34 -40.82 -0.34 5.43 16 34 H 0.07 1.21 6.28 -51.92 -0.33 0.88 16 35 H 0.06 0.88 8.03 -51.93 -0.42 0.46 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 1.30 6.82 -51.93 -0.35 0.94 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.07 1.95 5.13 -51.93 -0.27 1.69 16 41 H 0.02 0.40 6.89 -51.92 -0.36 0.04 16 42 H 0.27 8.16 7.23 -40.82 -0.30 7.86 16 43 H 0.03 0.60 8.13 -51.93 -0.42 0.18 16 44 H 0.07 1.58 7.92 -51.93 -0.41 1.17 16 45 H 0.24 1.96 8.06 -52.49 -0.42 1.53 16 LS Contribution 366.66 15.07 5.53 5.53 Total: -1.00 -33.38 366.66 -6.89 -40.27 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.53 Total: 3.93 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -0.12 Total: 5.11 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: -0.15 Total: -59.68 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.51 Total: -15.94 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -5.10 Total: 20.79 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.38 -6.89 -40.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034287799.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.767 kcal (2) G-P(sol) polarization free energy of solvation -33.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds