Wall clock time and date at job start Tue Mar 31 2020 14:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.47232 * 2 1 4 4 C 1.35348 * 116.99913 * 179.97438 * 3 2 1 5 5 N 1.30548 * 125.44745 * 180.02562 * 4 3 2 6 6 C 1.36331 * 108.38539 * 180.02562 * 5 4 3 7 7 C 1.47367 * 126.41615 * 179.97438 * 6 5 4 8 8 O 1.21619 * 119.99983 * 180.02562 * 7 6 5 9 9 N 1.34780 * 119.99814 * 0.02628 * 7 6 5 10 10 C 1.46496 * 120.00111 * 179.97438 * 9 7 6 11 11 H 1.09001 * 108.45973 * 327.28791 * 10 9 7 12 12 C 1.52522 * 108.52485 * 209.71888 * 10 9 7 13 13 C 1.50124 * 105.41906 * 149.35148 * 12 10 9 14 14 C 1.54842 * 110.81748 * 97.67991 * 13 12 10 15 15 C 1.54400 * 110.07145 * 321.07689 * 14 13 12 16 16 N 1.43427 * 116.39212 * 318.65267 * 15 14 13 17 17 C 1.36934 * 120.53682 * 271.72869 * 16 15 14 18 18 H 1.08003 * 120.00135 * 145.95896 * 17 16 15 19 19 C 1.38810 * 119.99996 * 325.95496 * 17 16 15 20 20 N 1.31620 * 120.00163 * 331.48580 * 19 17 16 21 21 Si 1.86804 * 120.00321 * 151.48096 * 19 17 16 22 22 H 1.48497 * 109.46972 * 270.00657 * 21 19 17 23 23 H 1.48494 * 109.47349 * 150.00254 * 21 19 17 24 24 H 1.48504 * 109.46591 * 29.99908 * 21 19 17 25 25 C 1.46242 * 108.52220 * 84.99701 * 10 9 7 26 26 C 1.35920 * 107.17527 * 0.26252 * 6 5 4 27 27 O 1.34211 * 125.44451 * 0.02835 * 4 3 2 28 28 H 1.09000 * 109.47426 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46886 * 300.00302 * 1 2 3 30 30 H 1.09000 * 109.46915 * 59.99815 * 1 2 3 31 31 H 1.09000 * 109.46886 * 239.99698 * 2 1 3 32 32 H 1.09000 * 109.46915 * 120.00185 * 2 1 3 33 33 H 0.97005 * 119.99877 * 359.97438 * 9 7 6 34 34 H 1.09007 * 110.24852 * 268.32473 * 12 10 9 35 35 H 1.09000 * 110.24996 * 30.23427 * 12 10 9 36 36 H 1.08994 * 109.20840 * 218.03206 * 13 12 10 37 37 H 1.08997 * 109.20190 * 337.38408 * 13 12 10 38 38 H 1.08998 * 109.35446 * 81.34462 * 14 13 12 39 39 H 1.09003 * 109.35890 * 200.92886 * 14 13 12 40 40 H 1.09001 * 107.89339 * 196.92740 * 15 14 13 41 41 H 1.09010 * 108.09974 * 80.53499 * 15 14 13 42 42 H 0.97005 * 119.99731 * 354.21973 * 20 19 17 43 43 H 1.09000 * 109.84427 * 60.14783 * 25 10 9 44 44 H 1.09000 * 109.84912 * 299.15841 * 25 10 9 45 45 H 1.07988 * 126.45955 * 179.73783 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3482 1.5246 0.0005 5 7 3.9595 2.6781 0.0011 6 6 5.3040 2.4523 0.0009 7 6 6.3632 3.4768 0.0009 8 8 7.5325 3.1426 0.0003 9 7 6.0360 4.7843 0.0015 10 6 7.0888 5.8029 0.0021 11 1 7.9418 5.4174 0.5606 12 6 6.5638 7.0422 0.7196 13 6 7.7681 7.6773 1.3522 14 6 8.3109 8.8279 0.4695 15 6 8.2190 8.4400 -1.0221 16 7 8.5783 7.0916 -1.3535 17 6 9.8783 6.7675 -1.6364 18 1 10.2672 5.8000 -1.3549 19 6 10.6964 7.6823 -2.2850 20 7 10.1720 8.5687 -3.1046 21 14 12.5415 7.6556 -1.9946 22 1 12.8755 8.5427 -0.8515 23 1 13.2415 8.1341 -3.2137 24 1 12.9741 6.2685 -1.6876 25 6 7.5068 6.0397 -1.3792 26 6 5.4847 1.1051 -0.0057 27 8 4.2630 0.5426 0.0005 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.1032 5.0509 0.0017 34 1 6.1077 7.7272 0.0048 35 1 5.8398 6.7577 1.4832 36 1 7.4926 8.0741 2.3292 37 1 8.5463 6.9245 1.4774 38 1 7.7224 9.7280 0.6473 39 1 9.3517 9.0221 0.7288 40 1 8.8679 9.1123 -1.5836 41 1 7.1946 8.6099 -1.3538 42 1 9.2271 8.5302 -3.3206 43 1 6.6587 6.3898 -1.9676 44 1 7.9020 5.1194 -1.8092 45 1 6.4308 0.5846 -0.0116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034287799.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:31 Heat of formation + Delta-G solvation = -44.374193 kcal Electronic energy + Delta-G solvation = -27652.885977 eV Core-core repulsion = 23672.734174 eV Total energy + Delta-G solvation = -3980.151803 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.59485 -41.24694 -40.02260 -39.36174 -36.44168 -36.12407 -34.84796 -32.98524 -32.80174 -31.57249 -30.51128 -27.96623 -26.17132 -25.90086 -24.68086 -24.26456 -23.30885 -21.88612 -21.71199 -20.81037 -20.08896 -19.15318 -18.68540 -18.44413 -17.52640 -17.41594 -16.67026 -16.42272 -16.22522 -16.09936 -15.85108 -15.54483 -15.39954 -15.09468 -14.65961 -14.39499 -14.24048 -14.01878 -13.94216 -13.58062 -13.27808 -12.89218 -12.68590 -12.62964 -12.57042 -12.40262 -11.99156 -11.96726 -11.90252 -11.88586 -11.81104 -11.64462 -11.38995 -11.33394 -11.10238 -10.55734 -10.20327 -9.80448 -8.89888 -8.14089 -5.50401 -0.03023 0.79031 0.86574 1.56503 1.59735 1.63331 1.82008 2.01063 2.15320 2.63863 3.15390 3.26018 3.58475 3.65283 3.69573 3.91693 3.94304 4.02785 4.04823 4.14328 4.25319 4.34274 4.36912 4.43903 4.50507 4.59353 4.60227 4.78896 4.82824 4.86261 4.93041 4.95812 5.11096 5.17819 5.18399 5.29021 5.39514 5.40727 5.48451 5.56380 5.60383 5.90271 6.25407 6.40491 6.54687 7.05138 7.10182 7.77514 8.21161 8.93760 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.022496 B = 0.002638 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.383721 B =10609.876754 C =11173.085149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.040 3.960 3 O -0.255 6.255 4 C 0.386 3.614 5 N -0.480 5.480 6 C -0.072 4.072 7 C 0.596 3.404 8 O -0.569 6.569 9 N -0.699 5.699 10 C 0.147 3.853 11 H 0.058 0.942 12 C -0.107 4.107 13 C -0.101 4.101 14 C -0.132 4.132 15 C 0.138 3.862 16 N -0.595 5.595 17 C -0.351 4.351 18 H 0.029 0.971 19 C -0.065 4.065 20 N -0.922 5.922 21 Si 1.109 2.891 22 H -0.280 1.280 23 H -0.289 1.289 24 H -0.280 1.280 25 C 0.134 3.866 26 C 0.028 3.972 27 O -0.214 6.214 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.416 0.584 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.078 0.922 39 H 0.034 0.966 40 H 0.038 0.962 41 H 0.032 0.968 42 H 0.255 0.745 43 H 0.038 0.962 44 H 0.033 0.967 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.353 -16.479 9.812 27.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.034 4.034 3 O -0.163 6.163 4 C 0.139 3.861 5 N -0.227 5.227 6 C -0.190 4.190 7 C 0.382 3.618 8 O -0.448 6.448 9 N -0.350 5.350 10 C 0.042 3.958 11 H 0.076 0.924 12 C -0.145 4.145 13 C -0.139 4.139 14 C -0.172 4.172 15 C 0.010 3.990 16 N -0.318 5.318 17 C -0.481 4.481 18 H 0.047 0.953 19 C -0.263 4.263 20 N -0.562 5.562 21 Si 0.934 3.066 22 H -0.206 1.206 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.009 3.991 26 C -0.045 4.045 27 O -0.105 6.105 28 H 0.130 0.870 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.253 0.747 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.057 0.943 38 H 0.097 0.903 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.052 0.948 45 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -18.671 -15.294 9.438 25.916 hybrid contribution -1.240 -1.453 -0.048 1.911 sum -19.911 -16.748 9.390 27.661 Atomic orbital electron populations 1.21864 0.89699 1.05104 1.03894 1.23460 0.98001 0.77727 1.04171 1.86423 1.07668 1.33348 1.88895 1.23330 0.84228 0.81390 0.97103 1.70992 1.03938 1.22843 1.24882 1.21451 0.89883 0.94491 1.13183 1.17016 0.86210 0.82536 0.75993 1.90858 1.19613 1.81897 1.52449 1.46127 1.11288 1.04763 1.72860 1.20580 0.89432 0.88031 0.97764 0.92352 1.21259 0.98245 0.94993 0.99981 1.21251 0.96429 0.97586 0.98605 1.22619 0.99680 0.98109 0.96817 1.20438 0.97280 0.86703 0.94578 1.43941 1.03781 1.05107 1.79004 1.19926 0.88522 1.03803 1.35821 0.95308 1.27085 1.08993 0.97172 0.93079 1.70854 1.14633 1.40705 1.30010 0.82936 0.71234 0.76231 0.76233 1.20633 1.21559 1.20594 1.20680 0.91159 0.92195 0.95027 1.25523 0.86643 0.92142 1.00157 1.84432 1.15897 1.38541 1.71602 0.87022 0.91197 0.91369 0.89802 0.89583 0.74726 0.90420 0.88688 0.90282 0.94338 0.90348 0.94705 0.94450 0.94920 0.93455 0.94371 0.94811 0.72040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 10.28 71.98 0.74 -0.02 16 2 C 0.04 0.36 6.38 71.98 0.46 0.82 16 3 O -0.25 -4.56 10.19 -64.16 -0.65 -5.22 16 4 C 0.39 8.47 8.98 130.43 1.17 9.64 16 5 N -0.48 -12.86 11.10 -419.39 -4.65 -17.51 16 6 C -0.07 -1.99 6.99 40.31 0.28 -1.71 16 7 C 0.60 20.35 7.73 86.65 0.67 21.02 16 8 O -0.57 -23.53 16.42 -4.09 -0.07 -23.60 16 9 N -0.70 -22.47 4.87 -456.66 -2.22 -24.69 16 10 C 0.15 5.50 2.01 42.75 0.09 5.59 16 11 H 0.06 2.59 6.22 -2.39 -0.01 2.58 16 12 C -0.11 -3.29 5.25 29.51 0.16 -3.13 16 13 C -0.10 -3.40 5.65 30.30 0.17 -3.22 16 14 C -0.13 -5.10 6.40 31.70 0.20 -4.90 16 15 C 0.14 6.46 4.45 87.42 0.39 6.85 16 16 N -0.60 -30.85 2.37 -708.84 -1.68 -32.53 16 17 C -0.35 -20.69 9.43 84.03 0.79 -19.90 16 18 H 0.03 1.81 7.97 -2.91 -0.02 1.79 16 19 C -0.07 -3.82 4.82 84.86 0.41 -3.41 16 20 N -0.92 -56.81 12.19 21.65 0.26 -56.55 16 21 Si 1.11 53.21 30.00 68.60 2.06 55.27 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 25 C 0.13 6.06 5.54 83.58 0.46 6.53 16 26 C 0.03 0.58 11.93 67.28 0.80 1.38 16 27 O -0.21 -4.03 10.20 18.72 0.19 -3.83 16 28 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 29 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.42 11.38 8.34 -92.70 -0.77 10.61 16 34 H 0.08 2.36 6.28 -2.38 -0.01 2.35 16 35 H 0.09 2.34 8.03 -2.39 -0.02 2.32 16 36 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.04 1.51 6.82 -2.39 -0.02 1.50 16 38 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.04 2.05 5.13 -2.39 -0.01 2.04 16 41 H 0.03 1.41 6.89 -2.38 -0.02 1.39 16 42 H 0.26 16.05 7.23 -92.70 -0.67 15.38 16 43 H 0.04 1.63 8.13 -2.39 -0.02 1.61 16 44 H 0.03 1.70 7.92 -2.39 -0.02 1.68 16 45 H 0.26 3.77 8.06 -2.92 -0.02 3.75 16 Total: -1.00 -75.70 366.66 0.38 -75.32 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.34 Total: 17.80 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 6.79 Total: 15.54 kcal Atomic # 7 Polarization: -122.99 SS G_CDS: -8.29 Total: -131.28 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -0.53 Total: -32.65 kcal Atomic # 14 Polarization: 53.21 SS G_CDS: 2.06 Total: 55.27 kcal Total: -75.70 0.38 -75.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034287799.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.949 kcal (2) G-P(sol) polarization free energy of solvation -75.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds