Wall clock time and date at job start Tue Mar 31 2020 14:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42895 * 109.46868 * 2 1 4 4 C 1.35728 * 116.99898 * 179.97438 * 3 2 1 5 5 C 1.41860 * 126.78474 * 180.22981 * 4 3 2 6 6 C 1.36658 * 103.80906 * 180.11874 * 5 4 3 7 7 C 1.47548 * 126.87856 * 179.97438 * 6 5 4 8 8 O 1.21572 * 119.99811 * 359.71660 * 7 6 5 9 9 N 1.34780 * 120.00083 * 179.71339 * 7 6 5 10 10 C 1.46496 * 120.00111 * 180.02562 * 9 7 6 11 11 H 1.09001 * 108.45973 * 327.28791 * 10 9 7 12 12 C 1.52522 * 108.52485 * 209.71888 * 10 9 7 13 13 C 1.50124 * 105.41906 * 149.35148 * 12 10 9 14 14 C 1.54842 * 110.81748 * 97.67991 * 13 12 10 15 15 C 1.54400 * 110.07145 * 321.07689 * 14 13 12 16 16 N 1.43427 * 116.39212 * 318.65267 * 15 14 13 17 17 C 1.36934 * 120.53682 * 271.72869 * 16 15 14 18 18 H 1.08003 * 120.00135 * 145.95896 * 17 16 15 19 19 C 1.38810 * 119.99996 * 325.95496 * 17 16 15 20 20 N 1.31620 * 120.00163 * 331.48580 * 19 17 16 21 21 Si 1.86804 * 120.00321 * 151.48096 * 19 17 16 22 22 H 1.48497 * 109.46972 * 270.00657 * 21 19 17 23 23 H 1.48494 * 109.47349 * 150.00254 * 21 19 17 24 24 H 1.48504 * 109.46591 * 29.99908 * 21 19 17 25 25 C 1.46242 * 108.52220 * 84.99701 * 10 9 7 26 26 O 1.34661 * 106.24335 * 359.66992 * 6 5 4 27 27 N 1.20874 * 111.63095 * 0.22975 * 26 6 5 28 28 H 1.08997 * 109.47287 * 299.99780 * 1 2 3 29 29 H 1.08995 * 109.47482 * 60.00450 * 1 2 3 30 30 H 1.09007 * 109.46926 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47061 * 239.99488 * 2 1 3 32 32 H 1.09005 * 109.47019 * 119.99846 * 2 1 3 33 33 H 1.08002 * 128.09372 * 0.04032 * 5 4 3 34 34 H 0.97005 * 119.99877 * 359.97438 * 9 7 6 35 35 H 1.09007 * 110.24852 * 268.32473 * 12 10 9 36 36 H 1.09000 * 110.24996 * 30.23427 * 12 10 9 37 37 H 1.08994 * 109.20840 * 218.03206 * 13 12 10 38 38 H 1.08997 * 109.20190 * 337.38408 * 13 12 10 39 39 H 1.08998 * 109.35446 * 81.34462 * 14 13 12 40 40 H 1.09003 * 109.35890 * 200.92886 * 14 13 12 41 41 H 1.09001 * 107.89339 * 196.92740 * 15 14 13 42 42 H 1.09010 * 108.09974 * 80.53499 * 15 14 13 43 43 H 0.97005 * 119.99731 * 354.21973 * 20 19 17 44 44 H 1.09000 * 109.84427 * 60.14783 * 25 10 9 45 45 H 1.09000 * 109.84912 * 299.15841 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5251 0.0005 5 6 4.0451 2.7628 0.0052 6 6 5.3624 2.3989 0.0009 7 6 6.5302 3.3007 0.0025 8 8 6.3677 4.5055 0.0030 9 7 7.7770 2.7887 0.0036 10 6 8.9364 3.6841 0.0057 11 1 8.6786 4.5841 -0.5525 12 6 10.0885 2.9868 -0.7104 13 6 10.8914 4.0876 -1.3407 14 6 12.1066 4.4585 -0.4557 15 6 11.7070 4.4223 1.0352 16 7 10.4237 4.9716 1.3649 17 6 10.2895 6.3045 1.6486 18 1 9.3885 6.8287 1.3660 19 6 11.3114 6.9818 2.2995 20 7 12.1118 6.3348 3.1199 21 14 11.5510 8.8119 2.0110 22 1 12.4788 9.0157 0.8696 23 1 12.1232 9.4347 3.2315 24 1 10.2411 9.4398 1.7022 25 6 9.2286 4.0626 1.3878 26 8 5.3811 1.0524 0.0018 27 7 4.2638 0.5912 0.0015 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.6292 3.7595 0.0097 34 1 7.9065 1.8274 0.0037 35 1 10.6995 2.4363 0.0050 36 1 9.7041 2.3119 -1.4752 37 1 11.2460 3.7587 -2.3175 38 1 10.2586 4.9662 -1.4663 39 1 12.9130 3.7469 -0.6327 40 1 12.4489 5.4608 -0.7136 41 1 12.4646 4.9672 1.5984 42 1 11.7271 3.3838 1.3661 43 1 11.9373 5.4050 3.3349 44 1 9.4520 3.1724 1.9759 45 1 8.3739 4.5857 1.8168 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034311022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:31 Heat of formation + Delta-G solvation = -1.918473 kcal Electronic energy + Delta-G solvation = -27627.557825 eV Core-core repulsion = 23649.247041 eV Total energy + Delta-G solvation = -3978.310785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.17317 -41.36424 -40.13663 -39.46071 -36.51952 -34.98245 -34.62282 -33.41391 -32.74598 -32.18486 -31.31237 -27.95947 -26.20759 -25.97364 -24.75517 -24.55241 -23.70259 -21.97359 -21.81642 -20.89278 -20.08084 -19.18308 -19.09990 -18.08544 -17.66616 -17.19700 -17.04198 -16.44129 -16.33277 -15.92878 -15.74906 -15.53959 -15.40833 -15.10898 -14.80128 -14.48208 -14.21980 -14.11072 -14.01032 -13.56545 -13.24327 -13.05400 -12.87069 -12.61469 -12.44162 -12.34942 -12.16055 -11.97410 -11.90100 -11.86937 -11.63202 -11.52606 -11.31401 -11.09051 -11.08194 -10.57014 -10.49264 -10.22458 -8.88074 -8.12423 -5.48809 -0.45287 0.88634 1.32229 1.45559 1.57747 1.63589 1.79500 1.82215 2.17011 2.64775 2.89429 3.18488 3.48927 3.56040 3.66120 3.82174 3.87694 3.90887 4.05406 4.06127 4.16907 4.24938 4.39616 4.46125 4.50705 4.53552 4.61250 4.76709 4.82328 4.83922 4.93569 4.97613 5.09147 5.13943 5.18988 5.29821 5.40672 5.44074 5.49153 5.59992 5.82918 5.92255 6.22173 6.42719 6.82483 6.91110 7.10990 7.79474 8.22077 8.95697 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.022263 B = 0.002607 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.399259 B =10736.060216 C =11455.723252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 O -0.289 6.289 4 C 0.206 3.794 5 C -0.156 4.156 6 C -0.052 4.052 7 C 0.603 3.397 8 O -0.545 6.545 9 N -0.694 5.694 10 C 0.146 3.854 11 H 0.061 0.939 12 C -0.108 4.108 13 C -0.102 4.102 14 C -0.133 4.133 15 C 0.137 3.863 16 N -0.595 5.595 17 C -0.350 4.350 18 H 0.030 0.970 19 C -0.064 4.064 20 N -0.922 5.922 21 Si 1.106 2.894 22 H -0.281 1.281 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.130 3.870 26 O 0.124 5.876 27 N -0.396 5.396 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.199 0.801 34 H 0.421 0.579 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.038 0.962 39 H 0.078 0.922 40 H 0.031 0.969 41 H 0.035 0.965 42 H 0.036 0.964 43 H 0.256 0.744 44 H 0.045 0.955 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.027 -16.412 -9.857 24.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.026 4.026 3 O -0.196 6.196 4 C 0.009 3.991 5 C -0.179 4.179 6 C -0.118 4.118 7 C 0.386 3.614 8 O -0.422 6.422 9 N -0.346 5.346 10 C 0.041 3.959 11 H 0.079 0.921 12 C -0.145 4.145 13 C -0.140 4.140 14 C -0.173 4.173 15 C 0.010 3.990 16 N -0.318 5.318 17 C -0.480 4.480 18 H 0.047 0.953 19 C -0.263 4.263 20 N -0.563 5.563 21 Si 0.931 3.069 22 H -0.207 1.207 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.005 3.995 26 O 0.057 5.943 27 N -0.120 5.120 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.123 0.877 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.216 0.784 34 H 0.259 0.741 35 H 0.099 0.901 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.057 0.943 39 H 0.096 0.904 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -15.483 -15.377 -9.479 23.792 hybrid contribution -1.164 -0.740 0.049 1.380 sum -16.647 -16.118 -9.430 25.017 Atomic orbital electron populations 1.21835 0.90084 1.04725 1.03747 1.23139 0.97553 0.79193 1.02673 1.86245 1.12173 1.32185 1.89016 1.21897 0.86414 0.90245 1.00509 1.22404 0.90098 0.99952 1.05435 1.23774 0.96082 0.84361 1.07572 1.16661 0.81862 0.85751 0.77117 1.90926 1.85289 1.14733 1.51286 1.46159 1.04263 1.11807 1.72341 1.20676 0.84582 0.92639 0.97960 0.92056 1.21292 0.95127 0.97913 1.00200 1.21261 0.96666 0.97499 0.98607 1.22626 0.97881 0.99927 0.96905 1.20438 0.88311 0.95765 0.94512 1.43928 1.03792 1.05097 1.79011 1.19913 1.06216 0.86243 1.35615 0.95266 1.27000 0.97256 1.08844 0.93183 1.70855 1.43080 1.12336 1.29996 0.82967 0.76191 0.71543 0.76175 1.20718 1.21712 1.20649 1.20732 0.90241 0.93482 0.95054 1.84934 1.22765 1.18057 1.68531 1.73955 0.90586 1.22181 1.25303 0.91370 0.91212 0.87660 0.91186 0.91406 0.78392 0.74076 0.90083 0.87961 0.90285 0.94341 0.90395 0.95008 0.94677 0.94555 0.93349 0.93648 0.94638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 71.98 0.74 -0.57 16 2 C 0.05 0.70 6.38 71.98 0.46 1.16 16 3 O -0.29 -5.96 10.21 -90.50 -0.92 -6.88 16 4 C 0.21 4.73 8.00 85.78 0.69 5.42 16 5 C -0.16 -3.66 10.97 22.80 0.25 -3.41 16 6 C -0.05 -1.26 7.29 24.36 0.18 -1.08 16 7 C 0.60 17.72 7.73 86.70 0.67 18.39 16 8 O -0.54 -20.99 16.44 -3.94 -0.06 -21.05 16 9 N -0.69 -17.80 4.87 -456.51 -2.22 -20.02 16 10 C 0.15 4.79 2.01 42.75 0.09 4.87 16 11 H 0.06 2.46 6.22 -2.39 -0.01 2.44 16 12 C -0.11 -2.81 5.25 29.51 0.16 -2.66 16 13 C -0.10 -3.14 5.65 30.30 0.17 -2.96 16 14 C -0.13 -4.84 6.40 31.70 0.20 -4.63 16 15 C 0.14 6.09 4.45 87.42 0.39 6.48 16 16 N -0.60 -29.21 2.37 -708.84 -1.68 -30.89 16 17 C -0.35 -19.95 9.43 84.03 0.79 -19.16 16 18 H 0.03 1.78 7.97 -2.91 -0.02 1.76 16 19 C -0.06 -3.69 4.82 84.86 0.41 -3.28 16 20 N -0.92 -55.62 12.19 21.65 0.26 -55.35 16 21 Si 1.11 52.27 30.00 68.60 2.06 54.33 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 24 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 25 C 0.13 5.34 5.54 83.58 0.46 5.80 16 26 O 0.12 2.74 11.03 65.65 0.72 3.46 16 27 N -0.40 -9.14 11.50 -172.03 -1.98 -11.12 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.20 4.19 8.06 -2.91 -0.02 4.16 16 34 H 0.42 7.64 8.44 -92.70 -0.78 6.86 16 35 H 0.08 2.08 6.28 -2.38 -0.01 2.07 16 36 H 0.10 1.95 8.03 -2.39 -0.02 1.93 16 37 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.04 1.40 6.82 -2.39 -0.02 1.38 16 39 H 0.08 2.35 8.14 -2.39 -0.02 2.34 16 40 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.04 1.86 5.13 -2.39 -0.01 1.85 16 42 H 0.04 1.45 6.89 -2.38 -0.02 1.44 16 43 H 0.26 15.69 7.23 -92.70 -0.67 15.02 16 44 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 45 H 0.03 1.65 7.93 -2.39 -0.02 1.63 16 Total: -1.00 -70.96 366.39 2.17 -68.79 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.33 Total: 14.37 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 5.65 Total: 4.36 kcal Atomic # 7 Polarization: -111.77 SS G_CDS: -5.61 Total: -117.38 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.26 Total: -24.47 kcal Atomic # 14 Polarization: 52.27 SS G_CDS: 2.06 Total: 54.33 kcal Total: -70.96 2.17 -68.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034311022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.873 kcal (2) G-P(sol) polarization free energy of solvation -70.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds