Wall clock time and date at job start Tue Mar 31 2020 14:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42900 * 109.47332 * 2 1 4 4 C 1.35728 * 117.00390 * 179.97438 * 3 2 1 5 5 C 1.41854 * 126.78622 * 179.97438 * 4 3 2 6 6 C 1.36666 * 103.80958 * 180.02562 * 5 4 3 7 7 C 1.47544 * 126.87634 * 180.02562 * 6 5 4 8 8 O 1.21583 * 120.00022 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00019 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00478 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.32268 * 34.99883 * 10 9 7 12 12 C 1.47085 * 109.33323 * 154.65329 * 10 9 7 13 13 C 1.52568 * 114.32999 * 183.06199 * 12 10 9 14 14 C 1.50886 * 109.35485 * 274.98493 * 13 12 10 15 15 C 1.53943 * 110.09653 * 91.88927 * 14 13 12 16 16 N 1.47607 * 112.13876 * 319.43440 * 15 14 13 17 17 C 1.36943 * 118.64030 * 137.87038 * 16 15 14 18 18 H 1.08005 * 119.99570 * 206.50924 * 17 16 15 19 19 C 1.38808 * 120.00583 * 26.50450 * 17 16 15 20 20 N 1.31624 * 119.99508 * 15.67448 * 19 17 16 21 21 Si 1.86795 * 120.00525 * 195.67721 * 19 17 16 22 22 H 1.48502 * 109.47089 * 59.99706 * 21 19 17 23 23 H 1.48494 * 109.47257 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46927 * 300.00277 * 21 19 17 25 25 C 1.44655 * 122.54464 * 317.85899 * 16 15 14 26 26 O 1.34650 * 106.24227 * 0.02562 * 6 5 4 27 27 N 1.20875 * 111.63641 * 359.70920 * 26 6 5 28 28 H 1.09005 * 109.47256 * 60.00276 * 1 2 3 29 29 H 1.09002 * 109.46929 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47456 * 299.99896 * 1 2 3 31 31 H 1.08996 * 109.47387 * 119.99663 * 2 1 3 32 32 H 1.09004 * 109.47228 * 239.99876 * 2 1 3 33 33 H 1.08003 * 128.09310 * 0.02562 * 5 4 3 34 34 H 0.97003 * 119.99773 * 0.02562 * 9 7 6 35 35 H 1.09002 * 108.51054 * 304.31861 * 12 10 9 36 36 H 1.08999 * 108.51357 * 61.96618 * 12 10 9 37 37 H 1.09001 * 109.49073 * 34.94983 * 13 12 10 38 38 H 1.08991 * 109.48999 * 155.01906 * 13 12 10 39 39 H 1.09002 * 109.36649 * 212.08394 * 14 13 12 40 40 H 1.09004 * 109.36413 * 331.82566 * 14 13 12 41 41 H 1.08996 * 108.94536 * 80.12080 * 15 14 13 42 42 H 1.08998 * 108.94938 * 198.75367 * 15 14 13 43 43 H 0.96997 * 119.99603 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.61892 * 330.84059 * 25 16 15 45 45 H 1.09001 * 109.32591 * 210.89766 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5251 0.0005 5 6 4.0451 2.7627 0.0001 6 6 5.3624 2.3987 0.0004 7 6 6.5302 3.3006 0.0007 8 8 6.3677 4.5055 0.0012 9 7 7.7769 2.7887 0.0014 10 6 8.9365 3.6840 0.0012 11 1 8.7068 4.5718 0.5905 12 6 10.0883 2.9892 0.5962 13 6 11.3441 3.8467 0.7202 14 6 12.1091 3.8041 -0.5796 15 6 11.6724 4.9672 -1.4887 16 7 10.2140 5.1909 -1.4439 17 6 9.7487 6.4777 -1.3910 18 1 8.7891 6.6868 -0.9416 19 6 10.5103 7.5134 -1.9146 20 7 11.5134 7.2482 -2.7245 21 14 10.1117 9.2833 -1.4700 22 1 10.2254 9.4621 -0.0002 23 1 11.0652 10.1925 -2.1550 24 1 8.7271 9.6023 -1.9018 25 6 9.2594 4.1041 -1.4540 26 8 5.3811 1.0524 0.0003 27 7 4.2639 0.5911 0.0058 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.6292 3.7595 -0.0003 34 1 7.9065 1.8273 0.0014 35 1 9.8070 2.6415 1.5902 36 1 10.3242 2.1209 -0.0190 37 1 11.0614 4.8757 0.9424 38 1 11.9706 3.4598 1.5238 39 1 13.1763 3.8872 -0.3739 40 1 11.9109 2.8588 -1.0849 41 1 12.1800 5.8768 -1.1680 42 1 11.9647 4.7435 -2.5146 43 1 12.0454 7.9719 -3.0907 44 1 9.6782 3.2541 -1.9927 45 1 8.3450 4.4318 -1.9485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034311027.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:35 Heat of formation + Delta-G solvation = 16.053670 kcal Electronic energy + Delta-G solvation = -27628.287087 eV Core-core repulsion = 23650.755632 eV Total energy + Delta-G solvation = -3977.531454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.13503 -39.78573 -39.27060 -37.73522 -34.75734 -33.71308 -33.28148 -32.22146 -31.49162 -30.89085 -29.99864 -26.12593 -25.02563 -24.18432 -23.60709 -23.38357 -22.49719 -20.81045 -20.27646 -19.22667 -18.83167 -18.13868 -17.14081 -16.60258 -16.27411 -16.24243 -15.97369 -15.12318 -14.94386 -14.58086 -14.33278 -14.06251 -13.75804 -13.54716 -13.43691 -13.20342 -13.07993 -12.68146 -12.54814 -12.27012 -12.13378 -11.62041 -11.54259 -11.51599 -11.05237 -10.94644 -10.77255 -10.59134 -10.19545 -10.16344 -10.06655 -9.98475 -9.73155 -9.63685 -9.60038 -9.55202 -8.96209 -8.32135 -6.64186 -5.73879 -3.17607 0.66591 1.91075 2.33299 2.51657 3.07220 3.36339 3.44896 3.48955 3.52542 3.88521 4.46587 4.49569 4.56231 4.61486 4.82600 4.83610 5.00396 5.21738 5.22536 5.33428 5.33906 5.44253 5.51898 5.52657 5.60384 5.70719 5.95167 6.00132 6.12715 6.25905 6.37234 6.55413 6.58880 6.60157 6.68601 6.68824 6.81244 6.90991 7.05500 7.45515 7.48683 7.73777 7.87788 7.92517 8.16873 8.52143 9.28761 9.93527 10.37486 11.33794 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018409 B = 0.002797 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.626768 B =10008.774621 C =11119.965905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.281 6.281 4 C 0.207 3.793 5 C -0.160 4.160 6 C -0.047 4.047 7 C 0.597 3.403 8 O -0.495 6.495 9 N -0.703 5.703 10 C 0.112 3.888 11 H 0.093 0.907 12 C -0.114 4.114 13 C -0.100 4.100 14 C -0.144 4.144 15 C 0.176 3.824 16 N -0.583 5.583 17 C -0.258 4.258 18 H 0.070 0.930 19 C 0.005 3.995 20 N -0.906 5.906 21 Si 0.901 3.099 22 H -0.284 1.284 23 H -0.292 1.292 24 H -0.282 1.282 25 C 0.156 3.844 26 O 0.113 5.887 27 N -0.395 5.395 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.190 0.810 34 H 0.400 0.600 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.045 0.955 41 H 0.076 0.924 42 H 0.025 0.975 43 H 0.253 0.747 44 H 0.035 0.965 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.769 -16.091 6.939 21.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.188 6.188 4 C 0.010 3.990 5 C -0.183 4.183 6 C -0.114 4.114 7 C 0.378 3.622 8 O -0.369 6.369 9 N -0.354 5.354 10 C 0.006 3.994 11 H 0.111 0.889 12 C -0.152 4.152 13 C -0.139 4.139 14 C -0.183 4.183 15 C 0.051 3.949 16 N -0.303 5.303 17 C -0.387 4.387 18 H 0.088 0.912 19 C -0.193 4.193 20 N -0.550 5.550 21 Si 0.731 3.269 22 H -0.210 1.210 23 H -0.218 1.218 24 H -0.208 1.208 25 C 0.026 3.974 26 O 0.048 5.952 27 N -0.120 5.120 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.207 0.793 34 H 0.234 0.766 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.043 0.957 43 H 0.063 0.937 44 H 0.053 0.947 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.014 -16.194 6.828 21.869 hybrid contribution -0.386 0.921 0.178 1.014 sum -13.400 -15.273 7.005 21.492 Atomic orbital electron populations 1.21798 0.92124 1.03216 1.03762 1.22837 0.95943 0.80561 1.02449 1.86224 1.13032 1.30244 1.89290 1.21838 0.85788 0.90544 1.00818 1.22201 0.90183 0.99280 1.06618 1.24356 0.96945 0.84047 1.06026 1.16475 0.81107 0.86125 0.78518 1.90959 1.84456 1.12536 1.48959 1.46111 1.05340 1.10848 1.73058 1.21468 0.82623 0.92404 1.02877 0.88871 1.20587 0.95690 0.99130 0.99778 1.20826 0.94559 1.01186 0.97280 1.22089 0.98760 1.00670 0.96786 1.21067 0.83371 0.95247 0.95251 1.43602 1.00307 1.01539 1.84867 1.19264 1.04376 0.83000 1.32084 0.91247 1.25021 0.98969 0.98289 0.97049 1.70071 1.21925 1.31058 1.31958 0.86380 0.77615 0.84760 0.78121 1.21010 1.21773 1.20819 1.20942 0.93980 0.91252 0.91236 1.84926 1.22814 1.18808 1.68640 1.73976 0.90471 1.22173 1.25346 0.91269 0.89943 0.91308 0.91558 0.91508 0.79272 0.76622 0.93159 0.92546 0.90384 0.93270 0.92862 0.93619 0.90610 0.95692 0.93697 0.94695 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.28 37.15 0.38 -0.48 16 2 C 0.06 0.47 6.38 37.15 0.24 0.71 16 3 O -0.28 -3.17 10.21 -18.89 -0.19 -3.36 16 4 C 0.21 2.58 8.00 -16.72 -0.13 2.45 16 5 C -0.16 -2.01 10.97 -38.77 -0.43 -2.44 16 6 C -0.05 -0.62 7.29 -36.36 -0.26 -0.89 16 7 C 0.60 9.16 7.77 -12.47 -0.10 9.07 16 8 O -0.50 -9.63 16.57 5.29 0.09 -9.54 16 9 N -0.70 -9.75 5.05 -56.67 -0.29 -10.04 16 10 C 0.11 1.89 2.34 -69.79 -0.16 1.73 16 11 H 0.09 1.87 7.57 -51.93 -0.39 1.48 16 12 C -0.11 -1.66 4.55 -29.79 -0.14 -1.79 16 13 C -0.10 -1.63 5.51 -28.01 -0.15 -1.78 16 14 C -0.14 -2.54 5.70 -27.30 -0.16 -2.70 16 15 C 0.18 4.03 4.66 -2.94 -0.01 4.02 16 16 N -0.58 -14.06 2.27 -172.03 -0.39 -14.45 16 17 C -0.26 -7.03 9.45 -15.06 -0.14 -7.17 16 18 H 0.07 1.94 7.88 -52.48 -0.41 1.53 16 19 C 0.00 0.14 4.87 -17.43 -0.08 0.05 16 20 N -0.91 -26.04 11.01 55.49 0.61 -25.43 16 21 Si 0.90 22.08 29.58 -169.99 -5.03 17.05 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.16 3.19 5.24 -4.04 -0.02 3.17 16 26 O 0.11 1.39 11.03 15.53 0.17 1.56 16 27 N -0.39 -5.00 11.50 30.47 0.35 -4.65 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.19 2.14 8.06 -52.48 -0.42 1.72 16 34 H 0.40 4.28 8.40 -40.82 -0.34 3.94 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.75 7.34 -51.93 -0.38 0.37 16 37 H 0.08 1.49 7.48 -51.93 -0.39 1.11 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.75 7.31 -51.93 -0.38 0.37 16 41 H 0.08 1.95 6.33 -51.93 -0.33 1.62 16 42 H 0.02 0.63 8.03 -51.93 -0.42 0.21 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.03 0.67 8.05 -51.93 -0.42 0.25 16 45 H 0.05 1.13 7.97 -51.93 -0.41 0.71 16 LS Contribution 369.42 15.07 5.57 5.57 Total: -1.00 -30.98 369.42 -7.10 -38.08 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.82 Total: 1.26 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -1.17 Total: 3.95 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.28 Total: -54.56 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.07 Total: -11.34 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.98 -7.10 -38.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034311027.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.129 kcal (2) G-P(sol) polarization free energy of solvation -30.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds