Wall clock time and date at job start Tue Mar 31 2020 14:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42900 * 109.47332 * 2 1 4 4 C 1.35728 * 117.00390 * 179.97438 * 3 2 1 5 5 C 1.41854 * 126.78622 * 179.97438 * 4 3 2 6 6 C 1.36666 * 103.80958 * 180.02562 * 5 4 3 7 7 C 1.47544 * 126.87634 * 180.02562 * 6 5 4 8 8 O 1.21583 * 120.00022 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00019 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00478 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.32268 * 34.99883 * 10 9 7 12 12 C 1.47085 * 109.33323 * 154.65329 * 10 9 7 13 13 C 1.52568 * 114.32999 * 183.06199 * 12 10 9 14 14 C 1.50886 * 109.35485 * 274.98493 * 13 12 10 15 15 C 1.53943 * 110.09653 * 91.88927 * 14 13 12 16 16 N 1.47607 * 112.13876 * 319.43440 * 15 14 13 17 17 C 1.36943 * 118.64030 * 137.87038 * 16 15 14 18 18 H 1.08005 * 119.99570 * 206.50924 * 17 16 15 19 19 C 1.38808 * 120.00583 * 26.50450 * 17 16 15 20 20 N 1.31624 * 119.99508 * 15.67448 * 19 17 16 21 21 Si 1.86795 * 120.00525 * 195.67721 * 19 17 16 22 22 H 1.48502 * 109.47089 * 59.99706 * 21 19 17 23 23 H 1.48494 * 109.47257 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46927 * 300.00277 * 21 19 17 25 25 C 1.44655 * 122.54464 * 317.85899 * 16 15 14 26 26 O 1.34650 * 106.24227 * 0.02562 * 6 5 4 27 27 N 1.20875 * 111.63641 * 359.70920 * 26 6 5 28 28 H 1.09005 * 109.47256 * 60.00276 * 1 2 3 29 29 H 1.09002 * 109.46929 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47456 * 299.99896 * 1 2 3 31 31 H 1.08996 * 109.47387 * 119.99663 * 2 1 3 32 32 H 1.09004 * 109.47228 * 239.99876 * 2 1 3 33 33 H 1.08003 * 128.09310 * 0.02562 * 5 4 3 34 34 H 0.97003 * 119.99773 * 0.02562 * 9 7 6 35 35 H 1.09002 * 108.51054 * 304.31861 * 12 10 9 36 36 H 1.08999 * 108.51357 * 61.96618 * 12 10 9 37 37 H 1.09001 * 109.49073 * 34.94983 * 13 12 10 38 38 H 1.08991 * 109.48999 * 155.01906 * 13 12 10 39 39 H 1.09002 * 109.36649 * 212.08394 * 14 13 12 40 40 H 1.09004 * 109.36413 * 331.82566 * 14 13 12 41 41 H 1.08996 * 108.94536 * 80.12080 * 15 14 13 42 42 H 1.08998 * 108.94938 * 198.75367 * 15 14 13 43 43 H 0.96997 * 119.99603 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.61892 * 330.84059 * 25 16 15 45 45 H 1.09001 * 109.32591 * 210.89766 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5251 0.0005 5 6 4.0451 2.7627 0.0001 6 6 5.3624 2.3987 0.0004 7 6 6.5302 3.3006 0.0007 8 8 6.3677 4.5055 0.0012 9 7 7.7769 2.7887 0.0014 10 6 8.9365 3.6840 0.0012 11 1 8.7068 4.5718 0.5905 12 6 10.0883 2.9892 0.5962 13 6 11.3441 3.8467 0.7202 14 6 12.1091 3.8041 -0.5796 15 6 11.6724 4.9672 -1.4887 16 7 10.2140 5.1909 -1.4439 17 6 9.7487 6.4777 -1.3910 18 1 8.7891 6.6868 -0.9416 19 6 10.5103 7.5134 -1.9146 20 7 11.5134 7.2482 -2.7245 21 14 10.1117 9.2833 -1.4700 22 1 10.2254 9.4621 -0.0002 23 1 11.0652 10.1925 -2.1550 24 1 8.7271 9.6023 -1.9018 25 6 9.2594 4.1041 -1.4540 26 8 5.3811 1.0524 0.0003 27 7 4.2639 0.5911 0.0058 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.6292 3.7595 -0.0003 34 1 7.9065 1.8273 0.0014 35 1 9.8070 2.6415 1.5902 36 1 10.3242 2.1209 -0.0190 37 1 11.0614 4.8757 0.9424 38 1 11.9706 3.4598 1.5238 39 1 13.1763 3.8872 -0.3739 40 1 11.9109 2.8588 -1.0849 41 1 12.1800 5.8768 -1.1680 42 1 11.9647 4.7435 -2.5146 43 1 12.0454 7.9719 -3.0907 44 1 9.6782 3.2541 -1.9927 45 1 8.3450 4.4318 -1.9485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034311027.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:34 Heat of formation + Delta-G solvation = -5.640519 kcal Electronic energy + Delta-G solvation = -27629.227817 eV Core-core repulsion = 23650.755632 eV Total energy + Delta-G solvation = -3978.472185 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.13817 -41.12742 -40.11183 -39.25215 -36.33740 -34.92065 -34.58669 -33.32948 -32.80305 -32.17508 -31.40553 -27.92253 -26.38451 -25.47095 -24.79084 -24.52874 -23.70338 -21.84300 -21.65274 -20.89532 -20.00062 -19.13063 -18.56186 -18.05648 -17.62241 -17.13863 -17.01555 -16.67699 -16.41647 -15.88744 -15.71317 -15.40402 -15.28754 -14.75903 -14.73532 -14.25494 -14.09346 -14.06843 -13.79438 -13.54968 -13.10115 -13.01661 -12.96202 -12.78918 -12.49347 -12.42676 -12.27294 -12.14210 -12.02855 -11.64188 -11.48434 -11.39692 -11.34788 -11.11892 -11.04162 -10.52412 -10.46411 -10.21684 -8.62184 -7.84961 -5.30453 -0.40855 0.91711 1.37036 1.45933 1.46639 1.48582 1.54415 1.85944 2.23149 2.53763 2.92810 3.28328 3.56807 3.70045 3.81108 3.90614 3.92486 3.95242 4.07891 4.13785 4.26496 4.28936 4.44784 4.53538 4.54158 4.74400 4.78263 4.79906 4.85228 5.03059 5.07650 5.11845 5.15180 5.23859 5.26862 5.38884 5.39579 5.63068 5.67207 5.75332 5.85346 5.87362 6.29739 6.43747 6.86745 6.99816 7.21051 7.96810 8.32365 9.19415 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018409 B = 0.002797 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.626768 B =10008.774621 C =11119.965905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 O -0.290 6.290 4 C 0.206 3.794 5 C -0.159 4.159 6 C -0.049 4.049 7 C 0.602 3.398 8 O -0.542 6.542 9 N -0.687 5.687 10 C 0.133 3.867 11 H 0.058 0.942 12 C -0.112 4.112 13 C -0.098 4.098 14 C -0.131 4.131 15 C 0.184 3.816 16 N -0.596 5.596 17 C -0.260 4.260 18 H 0.054 0.946 19 C -0.044 4.044 20 N -0.932 5.932 21 Si 0.957 3.043 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.155 3.845 26 O 0.124 5.876 27 N -0.396 5.396 28 H 0.067 0.933 29 H 0.105 0.895 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.198 0.802 34 H 0.420 0.580 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.041 0.959 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.039 0.961 42 H -0.006 1.006 43 H 0.249 0.751 44 H 0.053 0.947 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.435 -18.642 8.264 24.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.026 4.026 3 O -0.197 6.197 4 C 0.009 3.991 5 C -0.181 4.181 6 C -0.116 4.116 7 C 0.385 3.615 8 O -0.419 6.419 9 N -0.338 5.338 10 C 0.026 3.974 11 H 0.077 0.923 12 C -0.150 4.150 13 C -0.136 4.136 14 C -0.170 4.170 15 C 0.059 3.941 16 N -0.318 5.318 17 C -0.391 4.391 18 H 0.072 0.928 19 C -0.240 4.240 20 N -0.578 5.578 21 Si 0.786 3.214 22 H -0.205 1.205 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.026 3.974 26 O 0.057 5.943 27 N -0.121 5.121 28 H 0.086 0.914 29 H 0.124 0.876 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.215 0.785 34 H 0.258 0.742 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.060 0.940 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.012 0.988 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -13.708 -18.824 8.170 24.678 hybrid contribution -0.287 1.621 -0.266 1.668 sum -13.995 -17.203 7.904 23.543 Atomic orbital electron populations 1.21833 0.90122 1.04713 1.03727 1.23135 0.97525 0.79209 1.02682 1.86244 1.12217 1.32185 1.89034 1.21887 0.86386 0.90248 1.00533 1.22395 0.90169 0.99925 1.05639 1.23803 0.96111 0.84322 1.07343 1.16624 0.81817 0.85729 0.77352 1.90946 1.85227 1.14713 1.51033 1.45852 1.04171 1.11581 1.72245 1.20922 0.84631 0.92343 0.99507 0.92350 1.20547 0.93606 0.99079 1.01733 1.20803 0.95719 0.99712 0.97352 1.21950 0.99857 0.98757 0.96446 1.20870 0.82415 0.96009 0.94788 1.43739 1.01359 1.01411 1.85290 1.19350 1.03763 0.84890 1.31094 0.92841 1.25649 0.99331 1.01516 0.97484 1.70209 1.22850 1.31586 1.33125 0.85496 0.77127 0.80849 0.77934 1.20469 1.21580 1.20885 1.21048 0.92007 0.90661 0.93678 1.84927 1.22746 1.18059 1.68519 1.73952 0.90583 1.22154 1.25374 0.91381 0.87649 0.91250 0.91195 0.91369 0.78520 0.74182 0.90225 0.89888 0.94007 0.89828 0.91209 0.91498 0.94217 0.98782 0.94161 0.92864 0.96173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.28 71.98 0.74 -0.63 16 2 C 0.05 0.72 6.38 71.98 0.46 1.18 16 3 O -0.29 -6.13 10.21 -90.51 -0.92 -7.06 16 4 C 0.21 4.85 8.00 85.78 0.69 5.54 16 5 C -0.16 -3.84 10.97 22.80 0.25 -3.59 16 6 C -0.05 -1.24 7.29 24.36 0.18 -1.06 16 7 C 0.60 18.21 7.77 86.70 0.67 18.88 16 8 O -0.54 -21.60 16.57 -3.98 -0.07 -21.66 16 9 N -0.69 -17.93 5.05 -451.47 -2.28 -20.21 16 10 C 0.13 4.35 2.34 43.79 0.10 4.46 16 11 H 0.06 2.38 7.57 -2.38 -0.02 2.36 16 12 C -0.11 -2.88 4.55 28.61 0.13 -2.75 16 13 C -0.10 -2.93 5.51 29.76 0.16 -2.77 16 14 C -0.13 -4.37 5.70 30.23 0.17 -4.20 16 15 C 0.18 8.62 4.66 86.49 0.40 9.03 16 16 N -0.60 -29.59 2.27 -698.18 -1.59 -31.18 16 17 C -0.26 -14.78 9.45 84.03 0.79 -13.98 16 18 H 0.05 3.15 7.88 -2.91 -0.02 3.13 16 19 C -0.04 -2.54 4.87 84.86 0.41 -2.13 16 20 N -0.93 -55.54 11.01 21.65 0.24 -55.30 16 21 Si 0.96 46.77 29.58 68.60 2.03 48.80 16 22 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 23 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 24 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 25 C 0.15 6.36 5.24 87.36 0.46 6.82 16 26 O 0.12 2.79 11.03 65.76 0.73 3.52 16 27 N -0.40 -9.30 11.50 -172.02 -1.98 -11.28 16 28 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.20 4.37 8.06 -2.91 -0.02 4.35 16 34 H 0.42 7.67 8.40 -92.71 -0.78 6.89 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.08 1.77 7.34 -2.39 -0.02 1.75 16 37 H 0.04 1.58 7.48 -2.39 -0.02 1.56 16 38 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.07 1.97 7.31 -2.38 -0.02 1.95 16 41 H 0.04 2.12 6.33 -2.39 -0.02 2.11 16 42 H -0.01 -0.31 8.03 -2.39 -0.02 -0.33 16 43 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 44 H 0.05 1.98 8.05 -2.39 -0.02 1.96 16 45 H 0.02 0.93 7.97 -2.39 -0.02 0.91 16 Total: -1.00 -70.71 369.42 2.01 -68.70 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 0.23 Total: 10.88 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 5.62 Total: 14.79 kcal Atomic # 7 Polarization: -112.35 SS G_CDS: -5.61 Total: -117.96 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.26 Total: -25.20 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -70.71 2.01 -68.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034311027.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.063 kcal (2) G-P(sol) polarization free energy of solvation -70.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds