Wall clock time and date at job start Tue Mar 31 2020 14:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.46948 * 2 1 4 4 C 1.35351 * 116.99912 * 180.02562 * 3 2 1 5 5 N 1.30557 * 125.44546 * 179.97438 * 4 3 2 6 6 C 1.36332 * 108.37903 * 180.02562 * 5 4 3 7 7 C 1.47373 * 126.40850 * 179.97438 * 6 5 4 8 8 O 1.21621 * 119.99642 * 180.02562 * 7 6 5 9 9 N 1.34780 * 119.99839 * 0.03418 * 7 6 5 10 10 C 1.46499 * 119.99703 * 179.97438 * 9 7 6 11 11 H 1.09007 * 109.47358 * 34.99785 * 10 9 7 12 12 C 1.52996 * 109.47033 * 154.99470 * 10 9 7 13 13 C 1.53005 * 109.47240 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47097 * 300.00231 * 13 12 10 15 15 H 1.09007 * 109.47092 * 300.00119 * 14 13 12 16 16 N 1.46494 * 109.47497 * 179.97438 * 14 13 12 17 17 C 1.36931 * 120.00458 * 154.99919 * 16 14 13 18 18 H 1.08002 * 120.00103 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00429 * 179.97438 * 17 16 14 20 20 N 1.31624 * 119.99535 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00484 * 179.97438 * 19 17 16 22 22 H 1.48490 * 109.47339 * 180.02562 * 21 19 17 23 23 H 1.48493 * 109.47239 * 300.00542 * 21 19 17 24 24 H 1.48504 * 109.46636 * 60.00101 * 21 19 17 25 25 C 1.53008 * 109.46982 * 59.99734 * 14 13 12 26 26 C 1.52997 * 109.47062 * 299.99834 * 25 14 13 27 27 C 1.35911 * 107.17587 * 0.26956 * 6 5 4 28 28 O 1.34203 * 125.44987 * 0.02562 * 4 3 2 29 29 H 1.08997 * 109.47586 * 300.00418 * 1 2 3 30 30 H 1.09002 * 109.47388 * 60.00383 * 1 2 3 31 31 H 1.09000 * 109.47121 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47267 * 240.00003 * 2 1 3 33 33 H 1.08999 * 109.46756 * 119.99235 * 2 1 3 34 34 H 0.96994 * 119.99864 * 359.97438 * 9 7 6 35 35 H 1.08999 * 109.47079 * 59.99951 * 12 10 9 36 36 H 1.08994 * 109.47417 * 299.99847 * 12 10 9 37 37 H 1.08995 * 109.47472 * 180.02562 * 13 12 10 38 38 H 1.08999 * 109.47117 * 59.99983 * 13 12 10 39 39 H 0.97000 * 119.99459 * 334.99717 * 16 14 13 40 40 H 0.97005 * 119.99717 * 179.97438 * 20 19 17 41 41 H 1.08993 * 109.46756 * 60.00139 * 25 14 13 42 42 H 1.09001 * 109.46861 * 180.02562 * 25 14 13 43 43 H 1.08999 * 109.47488 * 300.00257 * 26 25 14 44 44 H 1.09004 * 109.46935 * 180.02562 * 26 25 14 45 45 H 1.08004 * 126.45452 * 179.74012 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3481 1.5247 -0.0005 5 7 3.9593 2.6783 -0.0011 6 6 5.3038 2.4524 -0.0021 7 6 6.3630 3.4772 -0.0035 8 8 7.5323 3.1430 -0.0048 9 7 6.0356 4.7846 -0.0032 10 6 7.0885 5.8033 -0.0041 11 1 7.9346 5.4509 -0.5942 12 6 6.5455 7.0974 -0.6134 13 6 7.6449 8.1615 -0.6137 14 6 8.0994 8.4257 0.8232 15 1 7.2531 8.7778 1.4131 16 7 9.1525 9.4441 0.8229 17 6 9.3631 10.2116 1.9372 18 1 8.7531 10.0659 2.8165 19 6 10.3613 11.1762 1.9371 20 7 11.1050 11.3534 0.8657 21 14 10.6481 12.2238 3.4569 22 1 11.7621 13.1718 3.2016 23 1 9.4132 12.9854 3.7734 24 1 10.9965 11.3470 4.6037 25 6 8.6424 7.1314 1.4325 26 6 7.5430 6.0674 1.4328 27 6 5.4845 1.1054 -0.0082 28 8 4.2630 0.5428 -0.0016 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8932 -0.5137 0.8901 34 1 5.1030 5.0510 -0.0025 35 1 5.6995 7.4498 -0.0233 36 1 6.2214 6.9091 -1.6368 37 1 7.2580 9.0836 -1.0473 38 1 8.4912 7.8094 -1.2035 39 1 9.7006 9.5746 0.0334 40 1 11.8023 12.0278 0.8655 41 1 9.4886 6.7794 0.8426 42 1 8.9658 7.3196 2.4563 43 1 6.6967 6.4196 2.0226 44 1 7.9297 5.1456 1.8673 45 1 6.4308 0.5849 -0.0145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034681656.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:57 Heat of formation + Delta-G solvation = -48.491982 kcal Electronic energy + Delta-G solvation = -26590.703071 eV Core-core repulsion = 22610.372707 eV Total energy + Delta-G solvation = -3980.330364 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.83077 -39.95658 -39.38501 -37.89898 -35.32587 -34.82245 -32.95962 -32.50042 -30.65335 -30.34986 -29.85967 -27.45884 -24.83081 -24.10442 -23.38341 -22.67597 -22.26271 -21.11936 -20.52158 -19.71405 -19.09738 -18.00127 -17.57026 -16.97347 -16.71086 -16.18700 -16.10775 -15.43682 -15.11826 -14.86204 -14.34296 -13.93264 -13.77768 -13.67260 -13.52316 -13.50258 -13.35851 -12.98934 -12.51052 -12.38227 -12.00453 -11.92012 -11.75017 -11.41638 -11.31004 -11.16799 -10.98237 -10.76586 -10.72328 -10.64696 -10.25671 -10.13763 -10.03957 -9.71148 -9.54558 -9.13435 -8.89919 -8.79398 -6.88884 -5.70686 -2.98861 0.77095 1.46425 1.70372 2.28198 3.00887 3.13222 3.47960 3.52270 3.53258 4.11371 4.16994 4.18528 4.49640 4.50954 4.63899 4.71277 4.95459 5.03823 5.09000 5.10430 5.11816 5.34504 5.37584 5.43034 5.57292 5.67219 5.73985 5.79603 5.90213 5.94104 6.08211 6.21842 6.30323 6.31265 6.36414 6.53561 6.62310 6.69118 6.78188 7.04745 7.09120 7.21153 7.49755 7.75428 8.08080 8.48336 9.59105 10.18230 10.52855 11.52035 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.030441 B = 0.001948 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.582728 B =14370.985043 C =14599.547861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.245 6.245 4 C 0.383 3.617 5 N -0.455 5.455 6 C -0.045 4.045 7 C 0.601 3.399 8 O -0.532 6.532 9 N -0.704 5.704 10 C 0.144 3.856 11 H 0.090 0.910 12 C -0.119 4.119 13 C -0.120 4.120 14 C 0.176 3.824 15 H 0.046 0.954 16 N -0.725 5.725 17 C -0.236 4.236 18 H 0.069 0.931 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.906 3.094 22 H -0.292 1.292 23 H -0.287 1.287 24 H -0.287 1.287 25 C -0.131 4.131 26 C -0.124 4.124 27 C 0.002 3.998 28 O -0.226 6.226 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.408 0.592 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.678 -26.055 -4.245 33.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.153 6.153 4 C 0.137 3.863 5 N -0.201 5.201 6 C -0.164 4.164 7 C 0.386 3.614 8 O -0.409 6.409 9 N -0.353 5.353 10 C 0.041 3.959 11 H 0.108 0.892 12 C -0.158 4.158 13 C -0.159 4.159 14 C 0.066 3.934 15 H 0.064 0.936 16 N -0.365 5.365 17 C -0.368 4.368 18 H 0.087 0.913 19 C -0.211 4.211 20 N -0.582 5.582 21 Si 0.737 3.263 22 H -0.218 1.218 23 H -0.214 1.214 24 H -0.213 1.213 25 C -0.172 4.172 26 C -0.163 4.163 27 C -0.071 4.071 28 O -0.117 6.117 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.243 0.757 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -20.384 -25.504 -4.091 32.904 hybrid contribution 0.235 -0.189 0.659 0.725 sum -20.149 -25.694 -3.431 32.832 Atomic orbital electron populations 1.21817 0.91137 1.03716 1.04298 1.23072 0.96933 0.79280 1.03089 1.86392 1.08901 1.30894 1.89151 1.23296 0.83494 0.81579 0.97943 1.71116 1.03894 1.21519 1.23607 1.21779 0.90228 0.94136 1.10249 1.16644 0.86070 0.81906 0.76806 1.90859 1.17854 1.81390 1.50833 1.45993 1.11305 1.04969 1.73078 1.21207 0.89981 0.86769 0.97941 0.89182 1.21753 0.99365 0.94138 1.00517 1.21751 0.97463 0.97621 0.99035 1.20252 0.91696 0.88540 0.92867 0.93561 1.42416 1.38573 1.39577 1.15973 1.19206 1.13298 1.11488 0.92778 0.91284 1.24733 0.98887 1.00001 0.97458 1.69657 1.23842 1.36892 1.27856 0.86284 0.77274 0.80140 0.82600 1.21756 1.21354 1.21346 1.22222 0.97030 0.95758 1.02234 1.21910 0.99614 0.99625 0.95198 1.24995 0.85829 0.92916 1.03330 1.84392 1.16268 1.39185 1.71898 0.90893 0.90904 0.89390 0.90757 0.90748 0.75699 0.91408 0.91754 0.91314 0.91934 0.78310 0.93552 0.92442 0.91779 0.92172 0.92305 0.74700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.40 10.28 37.16 0.38 -0.02 16 2 C 0.05 0.22 6.38 37.16 0.24 0.46 16 3 O -0.25 -2.05 10.19 -40.97 -0.42 -2.46 16 4 C 0.38 3.83 8.98 52.22 0.47 4.30 16 5 N -0.46 -5.38 11.10 -11.71 -0.13 -5.51 16 6 C -0.05 -0.52 6.99 -82.98 -0.58 -1.10 16 7 C 0.60 8.14 7.78 -12.54 -0.10 8.04 16 8 O -0.53 -8.59 16.55 5.26 0.09 -8.50 16 9 N -0.70 -8.86 5.07 -54.89 -0.28 -9.14 16 10 C 0.14 2.01 2.45 -67.93 -0.17 1.84 16 11 H 0.09 1.39 7.58 -51.92 -0.39 1.00 16 12 C -0.12 -1.56 5.39 -26.73 -0.14 -1.70 16 13 C -0.12 -1.96 5.39 -26.73 -0.14 -2.10 16 14 C 0.18 3.50 2.77 -67.93 -0.19 3.31 16 15 H 0.05 0.94 8.08 -51.92 -0.42 0.52 16 16 N -0.73 -18.32 5.12 -53.42 -0.27 -18.59 16 17 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 20 N -0.93 -28.53 13.06 55.49 0.72 -27.80 16 21 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 C -0.13 -2.43 5.50 -26.73 -0.15 -2.58 16 26 C -0.12 -1.91 5.49 -26.73 -0.15 -2.06 16 27 C 0.00 0.01 11.93 29.90 0.36 0.37 16 28 O -0.23 -1.95 10.20 -17.73 -0.18 -2.13 16 29 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.07 8.14 -51.93 -0.42 -0.36 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.41 4.55 8.33 -40.82 -0.34 4.21 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.38 10.29 7.80 -40.82 -0.32 9.98 16 40 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.24 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 378.76 15.07 5.71 5.71 Total: -1.00 -33.63 378.76 -7.14 -40.77 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -6.94 Total: 8.54 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -0.42 Total: 1.45 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: 0.04 Total: -61.05 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.51 Total: -13.10 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.63 -7.14 -40.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034681656.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.724 kcal (2) G-P(sol) polarization free energy of solvation -33.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds