Wall clock time and date at job start Tue Mar 31 2020 14:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42904 * 109.46952 * 2 1 4 4 C 1.35729 * 116.99728 * 180.02562 * 3 2 1 5 5 C 1.41857 * 126.78349 * 180.27845 * 4 3 2 6 6 C 1.36662 * 103.81050 * 180.14392 * 5 4 3 7 7 C 1.47543 * 126.87588 * 179.90917 * 6 5 4 8 8 O 1.21582 * 120.00255 * 359.70788 * 7 6 5 9 9 N 1.34785 * 119.99920 * 179.70895 * 7 6 5 10 10 C 1.46499 * 120.00145 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.46603 * 34.99991 * 10 9 7 12 12 C 1.52995 * 109.47022 * 154.99694 * 10 9 7 13 13 C 1.52997 * 109.47208 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47252 * 300.00624 * 13 12 10 15 15 H 1.08996 * 109.46825 * 299.99377 * 14 13 12 16 16 N 1.46507 * 109.46810 * 180.02562 * 14 13 12 17 17 C 1.36935 * 119.99742 * 155.00035 * 16 14 13 18 18 H 1.07999 * 120.00083 * 359.97438 * 17 16 14 19 19 C 1.38817 * 119.99986 * 179.97438 * 17 16 14 20 20 N 1.31617 * 119.99464 * 0.27719 * 19 17 16 21 21 Si 1.86800 * 119.99902 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47035 * 60.00419 * 21 19 17 23 23 H 1.48503 * 109.46845 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47237 * 300.00175 * 21 19 17 25 25 C 1.52996 * 109.47151 * 59.99565 * 14 13 12 26 26 C 1.52992 * 109.47428 * 300.00006 * 25 14 13 27 27 O 1.34660 * 106.24370 * 359.64609 * 6 5 4 28 28 N 1.20880 * 111.62847 * 0.23858 * 27 6 5 29 29 H 1.08999 * 109.46920 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47321 * 299.99957 * 1 2 3 31 31 H 1.08993 * 109.47250 * 60.00640 * 1 2 3 32 32 H 1.08995 * 109.47148 * 239.99777 * 2 1 3 33 33 H 1.09001 * 109.47417 * 119.99630 * 2 1 3 34 34 H 1.08003 * 128.09696 * 0.04270 * 5 4 3 35 35 H 0.97002 * 119.99594 * 359.97438 * 9 7 6 36 36 H 1.09003 * 109.46913 * 59.99931 * 12 10 9 37 37 H 1.08999 * 109.47672 * 300.00622 * 12 10 9 38 38 H 1.09006 * 109.47432 * 180.02562 * 13 12 10 39 39 H 1.09007 * 109.46674 * 60.00525 * 13 12 10 40 40 H 0.96999 * 120.00180 * 334.98962 * 16 14 13 41 41 H 0.97001 * 120.00638 * 359.71685 * 20 19 17 42 42 H 1.09003 * 109.47095 * 60.00411 * 25 14 13 43 43 H 1.09004 * 109.46628 * 179.97438 * 25 14 13 44 44 H 1.09003 * 109.47313 * 300.00271 * 26 25 14 45 45 H 1.08996 * 109.47639 * 180.02562 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5251 -0.0005 5 6 4.0451 2.7627 0.0049 6 6 5.3624 2.3988 -0.0017 7 6 6.5301 3.3007 -0.0017 8 8 6.3677 4.5056 -0.0009 9 7 7.7770 2.7887 -0.0028 10 6 8.9364 3.6842 -0.0034 11 1 8.7098 4.5723 0.5864 12 6 10.1395 2.9610 0.6052 13 6 11.3506 3.8959 0.6040 14 6 11.6762 4.3070 -0.8334 15 1 11.9025 3.4186 -1.4229 16 7 12.8363 5.2017 -0.8345 17 6 13.6250 5.2987 -1.9497 18 1 13.3920 4.7154 -2.8282 19 6 14.7239 6.1469 -1.9510 20 7 15.0109 6.8537 -0.8784 21 14 15.8002 6.2787 -3.4721 22 1 14.9819 6.7501 -4.6181 23 1 16.8991 7.2448 -3.2186 24 1 16.3748 4.9465 -3.7889 25 6 10.4730 5.0301 -1.4419 26 6 9.2620 4.0952 -1.4408 27 8 5.3812 1.0523 -0.0021 28 7 4.2638 0.5912 -0.0014 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.6293 3.7595 0.0109 35 1 7.9065 1.8274 -0.0031 36 1 10.3660 2.0728 0.0154 37 1 9.9075 2.6677 1.6290 38 1 12.2080 3.3806 1.0372 39 1 11.1243 4.7844 1.1936 40 1 13.0456 5.7255 -0.0454 41 1 14.4521 6.7850 -0.0885 42 1 10.2468 5.9186 -0.8523 43 1 10.7052 5.3233 -2.4658 44 1 9.4882 3.2068 -2.0303 45 1 8.4049 4.6102 -1.8747 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034691943.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:54 Heat of formation + Delta-G solvation = -9.448826 kcal Electronic energy + Delta-G solvation = -26593.770511 eV Core-core repulsion = 22615.133185 eV Total energy + Delta-G solvation = -3978.637325 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.38886 -40.21410 -39.46359 -38.14244 -35.21311 -33.95218 -33.46009 -32.33573 -31.64207 -30.53595 -30.48257 -27.40472 -25.00222 -23.89012 -23.68447 -23.11137 -22.40470 -21.36997 -20.86266 -19.94662 -19.04011 -18.38329 -17.36794 -17.23394 -16.62133 -16.44290 -16.28659 -15.44183 -15.12164 -14.98251 -14.44727 -14.00770 -13.93991 -13.86323 -13.66109 -13.59044 -13.50511 -13.22300 -12.66795 -12.43450 -12.23772 -11.90772 -11.79328 -11.67361 -11.41616 -11.21876 -10.85380 -10.74506 -10.63631 -10.39512 -10.28131 -10.17302 -9.99889 -9.93573 -9.76708 -9.24399 -9.09960 -8.86227 -7.01238 -6.07799 -3.07519 0.36812 1.67339 2.12793 2.19986 2.66995 3.01078 3.52975 3.56485 3.64569 3.73932 4.25368 4.35710 4.42772 4.48354 4.67219 4.68309 4.75328 4.78009 4.92108 5.06654 5.14076 5.20781 5.27571 5.46438 5.47202 5.48965 5.57609 5.62918 5.71858 5.76709 5.90756 6.04239 6.13204 6.18557 6.34298 6.41682 6.48418 6.48888 6.61713 6.89577 7.05899 7.06184 7.59938 7.73409 7.83315 8.78070 9.25597 10.11935 10.26967 11.40692 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.041161 B = 0.001868 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.088835 B =14988.846489 C =15088.881330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.280 6.280 4 C 0.208 3.792 5 C -0.155 4.155 6 C -0.055 4.055 7 C 0.603 3.397 8 O -0.505 6.505 9 N -0.706 5.706 10 C 0.144 3.856 11 H 0.093 0.907 12 C -0.119 4.119 13 C -0.122 4.122 14 C 0.181 3.819 15 H 0.048 0.952 16 N -0.737 5.737 17 C -0.330 4.330 18 H 0.064 0.936 19 C -0.046 4.046 20 N -0.945 5.945 21 Si 1.079 2.921 22 H -0.296 1.296 23 H -0.285 1.285 24 H -0.296 1.296 25 C -0.131 4.131 26 C -0.125 4.125 27 O 0.116 5.884 28 N -0.390 5.390 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.191 0.809 35 H 0.406 0.594 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.366 0.634 41 H 0.255 0.745 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.379 -15.222 3.886 30.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.187 6.187 4 C 0.011 3.989 5 C -0.177 4.177 6 C -0.122 4.122 7 C 0.386 3.614 8 O -0.380 6.380 9 N -0.356 5.356 10 C 0.041 3.959 11 H 0.111 0.889 12 C -0.158 4.158 13 C -0.160 4.160 14 C 0.072 3.928 15 H 0.066 0.934 16 N -0.378 5.378 17 C -0.461 4.461 18 H 0.082 0.918 19 C -0.243 4.243 20 N -0.590 5.590 21 Si 0.910 3.090 22 H -0.223 1.223 23 H -0.211 1.211 24 H -0.223 1.223 25 C -0.172 4.172 26 C -0.164 4.164 27 O 0.050 5.950 28 N -0.114 5.114 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.208 0.792 35 H 0.241 0.759 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.199 0.801 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -25.435 -14.843 3.042 29.606 hybrid contribution -1.636 -0.558 0.776 1.894 sum -27.070 -15.401 3.818 31.378 Atomic orbital electron populations 1.21803 0.91988 1.03339 1.03791 1.22867 0.96057 0.80357 1.02531 1.86233 1.12850 1.30455 1.89192 1.21843 0.85937 0.90426 1.00721 1.22208 0.90109 0.99365 1.06055 1.24152 0.96687 0.84306 1.07016 1.16476 0.81124 0.86093 0.77751 1.90917 1.84751 1.12769 1.49517 1.46083 1.05083 1.11272 1.73186 1.21277 0.83293 0.93072 0.98221 0.88886 1.21754 0.94203 0.99163 1.00657 1.21772 0.96340 0.98857 0.99071 1.20188 0.87002 0.92880 0.92771 0.93400 1.42433 1.29225 1.50642 1.15540 1.20039 1.08419 1.24302 0.93319 0.91808 1.25744 0.98055 0.96391 1.04136 1.70876 1.41246 1.43243 1.03654 0.83257 0.76059 0.75800 0.73910 1.22323 1.21071 1.22315 1.22206 0.94408 0.98206 1.02423 1.21919 0.99214 1.00338 0.94978 1.84948 1.22907 1.18574 1.68537 1.74002 0.90420 1.22075 1.24951 0.89836 0.91266 0.91245 0.91441 0.91462 0.79202 0.75895 0.91210 0.91529 0.91285 0.91994 0.80057 0.93384 0.92541 0.91598 0.91940 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 10.28 37.16 0.38 -0.27 16 2 C 0.06 0.38 6.38 37.16 0.24 0.61 16 3 O -0.28 -2.62 10.21 -18.89 -0.19 -2.82 16 4 C 0.21 2.13 8.00 -16.72 -0.13 2.00 16 5 C -0.15 -1.52 10.97 -38.77 -0.43 -1.94 16 6 C -0.06 -0.56 7.29 -36.36 -0.26 -0.83 16 7 C 0.60 6.94 7.78 -12.46 -0.10 6.84 16 8 O -0.50 -7.48 16.57 5.29 0.09 -7.39 16 9 N -0.71 -7.03 5.07 -54.85 -0.28 -7.31 16 10 C 0.14 1.74 2.46 -67.93 -0.17 1.57 16 11 H 0.09 1.27 7.58 -51.93 -0.39 0.87 16 12 C -0.12 -1.35 5.39 -26.74 -0.14 -1.50 16 13 C -0.12 -1.84 5.39 -26.73 -0.14 -1.98 16 14 C 0.18 3.45 2.77 -67.93 -0.19 3.26 16 15 H 0.05 0.94 8.08 -51.93 -0.42 0.53 16 16 N -0.74 -18.08 5.12 -53.42 -0.27 -18.35 16 17 C -0.33 -9.18 9.93 -15.06 -0.15 -9.32 16 18 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 19 C -0.05 -1.33 5.50 -17.43 -0.10 -1.42 16 20 N -0.94 -29.17 13.70 55.49 0.76 -28.41 16 21 Si 1.08 25.91 29.92 -169.99 -5.09 20.82 16 22 H -0.30 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.30 -6.77 7.11 56.52 0.40 -6.37 16 25 C -0.13 -2.31 5.50 -26.74 -0.15 -2.46 16 26 C -0.13 -1.74 5.49 -26.74 -0.15 -1.89 16 27 O 0.12 1.15 11.03 15.50 0.17 1.32 16 28 N -0.39 -4.12 11.50 30.47 0.35 -3.77 16 29 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.19 1.59 8.06 -52.48 -0.42 1.16 16 35 H 0.41 3.01 8.43 -40.82 -0.34 2.66 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.06 0.95 8.14 -51.92 -0.42 0.52 16 40 H 0.37 9.31 6.63 -40.82 -0.27 9.04 16 41 H 0.25 7.74 6.77 -40.82 -0.28 7.46 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 376.79 15.07 5.68 5.68 Total: -1.00 -33.15 376.79 -7.10 -40.25 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -6.83 Total: 7.31 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -1.48 Total: -7.33 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 0.56 Total: -57.84 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.07 Total: -8.89 kcal Atomic # 14 Polarization: 25.91 SS G_CDS: -5.09 Total: 20.82 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.15 -7.10 -40.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034691943.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.801 kcal (2) G-P(sol) polarization free energy of solvation -33.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds