Wall clock time and date at job start Tue Mar 31 2020 14:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42904 * 109.46952 * 2 1 4 4 C 1.35729 * 116.99728 * 180.02562 * 3 2 1 5 5 C 1.41857 * 126.78349 * 180.27845 * 4 3 2 6 6 C 1.36662 * 103.81050 * 180.14392 * 5 4 3 7 7 C 1.47543 * 126.87588 * 179.90917 * 6 5 4 8 8 O 1.21582 * 120.00255 * 359.70788 * 7 6 5 9 9 N 1.34785 * 119.99920 * 179.70895 * 7 6 5 10 10 C 1.46499 * 120.00145 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.46603 * 34.99991 * 10 9 7 12 12 C 1.52995 * 109.47022 * 154.99694 * 10 9 7 13 13 C 1.52997 * 109.47208 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47252 * 300.00624 * 13 12 10 15 15 H 1.08996 * 109.46825 * 299.99377 * 14 13 12 16 16 N 1.46507 * 109.46810 * 180.02562 * 14 13 12 17 17 C 1.36935 * 119.99742 * 155.00035 * 16 14 13 18 18 H 1.07999 * 120.00083 * 359.97438 * 17 16 14 19 19 C 1.38817 * 119.99986 * 179.97438 * 17 16 14 20 20 N 1.31617 * 119.99464 * 0.27719 * 19 17 16 21 21 Si 1.86800 * 119.99902 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47035 * 60.00419 * 21 19 17 23 23 H 1.48503 * 109.46845 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47237 * 300.00175 * 21 19 17 25 25 C 1.52996 * 109.47151 * 59.99565 * 14 13 12 26 26 C 1.52992 * 109.47428 * 300.00006 * 25 14 13 27 27 O 1.34660 * 106.24370 * 359.64609 * 6 5 4 28 28 N 1.20880 * 111.62847 * 0.23858 * 27 6 5 29 29 H 1.08999 * 109.46920 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47321 * 299.99957 * 1 2 3 31 31 H 1.08993 * 109.47250 * 60.00640 * 1 2 3 32 32 H 1.08995 * 109.47148 * 239.99777 * 2 1 3 33 33 H 1.09001 * 109.47417 * 119.99630 * 2 1 3 34 34 H 1.08003 * 128.09696 * 0.04270 * 5 4 3 35 35 H 0.97002 * 119.99594 * 359.97438 * 9 7 6 36 36 H 1.09003 * 109.46913 * 59.99931 * 12 10 9 37 37 H 1.08999 * 109.47672 * 300.00622 * 12 10 9 38 38 H 1.09006 * 109.47432 * 180.02562 * 13 12 10 39 39 H 1.09007 * 109.46674 * 60.00525 * 13 12 10 40 40 H 0.96999 * 120.00180 * 334.98962 * 16 14 13 41 41 H 0.97001 * 120.00638 * 359.71685 * 20 19 17 42 42 H 1.09003 * 109.47095 * 60.00411 * 25 14 13 43 43 H 1.09004 * 109.46628 * 179.97438 * 25 14 13 44 44 H 1.09003 * 109.47313 * 300.00271 * 26 25 14 45 45 H 1.08996 * 109.47639 * 180.02562 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5251 -0.0005 5 6 4.0451 2.7627 0.0049 6 6 5.3624 2.3988 -0.0017 7 6 6.5301 3.3007 -0.0017 8 8 6.3677 4.5056 -0.0009 9 7 7.7770 2.7887 -0.0028 10 6 8.9364 3.6842 -0.0034 11 1 8.7098 4.5723 0.5864 12 6 10.1395 2.9610 0.6052 13 6 11.3506 3.8959 0.6040 14 6 11.6762 4.3070 -0.8334 15 1 11.9025 3.4186 -1.4229 16 7 12.8363 5.2017 -0.8345 17 6 13.6250 5.2987 -1.9497 18 1 13.3920 4.7154 -2.8282 19 6 14.7239 6.1469 -1.9510 20 7 15.0109 6.8537 -0.8784 21 14 15.8002 6.2787 -3.4721 22 1 14.9819 6.7501 -4.6181 23 1 16.8991 7.2448 -3.2186 24 1 16.3748 4.9465 -3.7889 25 6 10.4730 5.0301 -1.4419 26 6 9.2620 4.0952 -1.4408 27 8 5.3812 1.0523 -0.0021 28 7 4.2638 0.5912 -0.0014 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.6293 3.7595 0.0109 35 1 7.9065 1.8274 -0.0031 36 1 10.3660 2.0728 0.0154 37 1 9.9075 2.6677 1.6290 38 1 12.2080 3.3806 1.0372 39 1 11.1243 4.7844 1.1936 40 1 13.0456 5.7255 -0.0454 41 1 14.4521 6.7850 -0.0885 42 1 10.2468 5.9186 -0.8523 43 1 10.7052 5.3233 -2.4658 44 1 9.4882 3.2068 -2.0303 45 1 8.4049 4.6102 -1.8747 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034691943.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:54 Heat of formation + Delta-G solvation = -33.614189 kcal Electronic energy + Delta-G solvation = -26594.818400 eV Core-core repulsion = 22615.133185 eV Total energy + Delta-G solvation = -3979.685214 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.17116 -41.21625 -40.12744 -39.40598 -36.69295 -35.02067 -34.61174 -33.28402 -32.25786 -32.04127 -31.73993 -28.90392 -26.02796 -25.26217 -24.58849 -24.12118 -23.61014 -22.48221 -21.76359 -21.15024 -20.08041 -19.25864 -19.15974 -18.08044 -17.62383 -17.23711 -17.03658 -16.87065 -16.10799 -15.93401 -15.78802 -15.43712 -15.32605 -15.07848 -14.86593 -14.76939 -14.10814 -14.01941 -13.57456 -13.54382 -13.12955 -13.10310 -12.95574 -12.71196 -12.46148 -12.35522 -12.23673 -12.15846 -12.05747 -11.86279 -11.58783 -11.50715 -11.42246 -11.09724 -11.06426 -10.82441 -10.48727 -10.21414 -9.07428 -8.35304 -5.28513 -0.44243 0.89659 1.33972 1.46591 1.59379 1.69293 1.78272 1.85421 2.18006 2.73781 2.90407 3.42922 3.53648 3.62485 3.71910 3.80304 3.81770 3.88745 3.90838 4.05991 4.21654 4.25003 4.31852 4.32651 4.46466 4.52114 4.55425 4.58752 4.76517 4.77322 4.83946 4.92593 5.04051 5.10792 5.14149 5.20595 5.23093 5.30233 5.48286 5.57889 5.65386 5.83536 6.20718 6.53651 6.82276 6.89892 7.14732 8.05550 8.16572 9.16897 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.041161 B = 0.001868 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.088835 B =14988.846489 C =15088.881330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.050 3.950 3 O -0.290 6.290 4 C 0.203 3.797 5 C -0.154 4.154 6 C -0.055 4.055 7 C 0.609 3.391 8 O -0.541 6.541 9 N -0.690 5.690 10 C 0.153 3.847 11 H 0.079 0.921 12 C -0.107 4.107 13 C -0.114 4.114 14 C 0.175 3.825 15 H 0.045 0.955 16 N -0.751 5.751 17 C -0.326 4.326 18 H 0.066 0.934 19 C -0.107 4.107 20 N -0.978 5.978 21 Si 1.125 2.875 22 H -0.281 1.281 23 H -0.294 1.294 24 H -0.276 1.276 25 C -0.122 4.122 26 C -0.115 4.115 27 O 0.124 5.876 28 N -0.398 5.398 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.201 0.799 35 H 0.422 0.578 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.358 0.642 41 H 0.244 0.756 42 H 0.042 0.958 43 H 0.038 0.962 44 H 0.077 0.923 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.848 -17.425 3.676 33.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.025 4.025 3 O -0.197 6.197 4 C 0.006 3.994 5 C -0.177 4.177 6 C -0.122 4.122 7 C 0.393 3.607 8 O -0.418 6.418 9 N -0.341 5.341 10 C 0.049 3.951 11 H 0.097 0.903 12 C -0.145 4.145 13 C -0.153 4.153 14 C 0.067 3.933 15 H 0.063 0.937 16 N -0.393 5.393 17 C -0.458 4.458 18 H 0.084 0.916 19 C -0.298 4.298 20 N -0.627 5.627 21 Si 0.951 3.049 22 H -0.207 1.207 23 H -0.221 1.221 24 H -0.202 1.202 25 C -0.163 4.163 26 C -0.154 4.154 27 O 0.057 5.943 28 N -0.122 5.122 29 H 0.122 0.878 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.218 0.782 35 H 0.260 0.740 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.190 0.810 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.096 0.904 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -26.966 -17.128 2.831 32.071 hybrid contribution -1.283 0.065 0.844 1.537 sum -28.250 -17.063 3.675 33.207 Atomic orbital electron populations 1.21832 0.90173 1.04680 1.03756 1.23117 0.97496 0.79234 1.02624 1.86244 1.12330 1.32085 1.89032 1.21971 0.86383 0.90435 1.00639 1.22423 0.90095 0.99875 1.05282 1.23829 0.96215 0.84373 1.07735 1.16514 0.81589 0.85669 0.76965 1.90910 1.85293 1.14369 1.51224 1.45838 1.04018 1.11879 1.72358 1.21018 0.84300 0.93249 0.96559 0.90308 1.21669 0.91694 0.98452 1.02718 1.21650 0.98123 0.99574 0.95907 1.20469 0.85552 0.91705 0.95605 0.93710 1.42687 1.30628 1.51530 1.14413 1.20381 1.08215 1.23074 0.94130 0.91640 1.27130 1.00041 0.96617 1.06038 1.70985 1.42077 1.45316 1.04280 0.82651 0.74506 0.76410 0.71367 1.20694 1.22063 1.20243 1.21995 0.95576 0.98481 1.00217 1.21792 0.97003 0.99860 0.96745 1.84941 1.22673 1.18234 1.68410 1.73980 0.90675 1.22297 1.25223 0.87787 0.91247 0.91305 0.91388 0.91301 0.78160 0.73953 0.89280 0.88781 0.91544 0.92492 0.81014 0.94579 0.93940 0.94280 0.90416 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.28 71.98 0.74 -0.27 16 2 C 0.05 0.59 6.38 71.98 0.46 1.05 16 3 O -0.29 -5.08 10.21 -90.52 -0.92 -6.00 16 4 C 0.20 3.87 8.00 85.78 0.69 4.56 16 5 C -0.15 -2.81 10.97 22.80 0.25 -2.56 16 6 C -0.06 -1.02 7.29 24.36 0.18 -0.84 16 7 C 0.61 12.94 7.78 86.70 0.67 13.61 16 8 O -0.54 -15.51 16.57 -3.97 -0.07 -15.58 16 9 N -0.69 -11.90 5.07 -445.70 -2.26 -14.16 16 10 C 0.15 3.35 2.46 44.99 0.11 3.46 16 11 H 0.08 2.04 7.58 -2.39 -0.02 2.02 16 12 C -0.11 -2.10 5.39 30.59 0.16 -1.94 16 13 C -0.11 -3.29 5.39 30.59 0.16 -3.13 16 14 C 0.17 6.59 2.77 44.99 0.12 6.71 16 15 H 0.04 1.72 8.08 -2.39 -0.02 1.70 16 16 N -0.75 -37.51 5.12 -322.94 -1.65 -39.17 16 17 C -0.33 -18.33 9.93 84.04 0.83 -17.49 16 18 H 0.07 3.58 7.83 -2.91 -0.02 3.56 16 19 C -0.11 -6.27 5.50 84.86 0.47 -5.80 16 20 N -0.98 -61.75 13.70 21.65 0.30 -61.45 16 21 Si 1.13 52.33 29.92 68.60 2.05 54.38 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 23 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 24 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 25 C -0.12 -4.30 5.50 30.59 0.17 -4.13 16 26 C -0.11 -3.03 5.49 30.59 0.17 -2.86 16 27 O 0.12 2.19 11.03 65.65 0.72 2.92 16 28 N -0.40 -7.74 11.50 -172.01 -1.98 -9.72 16 29 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.20 3.11 8.06 -2.91 -0.02 3.09 16 35 H 0.42 4.74 8.43 -92.71 -0.78 3.96 16 36 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 39 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.36 18.79 6.63 -92.71 -0.61 18.17 16 41 H 0.24 15.32 6.77 -92.71 -0.63 14.69 16 42 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 44 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -72.62 376.79 1.14 -71.48 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: -0.24 Total: 26.95 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: 5.19 Total: -9.64 kcal Atomic # 7 Polarization: -118.90 SS G_CDS: -5.60 Total: -124.50 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.27 Total: -18.67 kcal Atomic # 14 Polarization: 52.33 SS G_CDS: 2.05 Total: 54.38 kcal Total: -72.62 1.14 -71.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034691943.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.862 kcal (2) G-P(sol) polarization free energy of solvation -72.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds