Wall clock time and date at job start Tue Mar 31 2020 14:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42901 * 109.47028 * 2 1 4 4 C 1.35351 * 117.00291 * 180.02562 * 3 2 1 5 5 N 1.30550 * 125.44713 * 180.29645 * 4 3 2 6 6 C 1.36334 * 108.38347 * 180.15828 * 5 4 3 7 7 C 1.47363 * 126.41393 * 179.82554 * 6 5 4 8 8 O 1.21627 * 120.00153 * 173.10530 * 7 6 5 9 9 N 1.34778 * 120.00086 * 353.10589 * 7 6 5 10 10 C 1.46924 * 120.62840 * 354.45507 * 9 7 6 11 11 C 1.53201 * 108.77337 * 126.37092 * 10 9 7 12 12 C 1.53042 * 109.33652 * 54.61990 * 11 10 9 13 13 H 1.09000 * 109.46535 * 58.66968 * 12 11 10 14 14 N 1.46503 * 109.45970 * 178.62966 * 12 11 10 15 15 C 1.36930 * 119.99827 * 275.00121 * 14 12 11 16 16 H 1.07995 * 120.00510 * 0.02562 * 15 14 12 17 17 C 1.38816 * 119.99899 * 179.97438 * 15 14 12 18 18 N 1.31626 * 119.99847 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00320 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47189 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47047 * 119.99925 * 19 17 15 22 22 H 1.48498 * 109.47396 * 240.00256 * 19 17 15 23 23 C 1.53043 * 109.53770 * 298.68153 * 12 11 10 24 24 H 1.08995 * 109.49844 * 301.34886 * 23 12 11 25 25 C 1.52998 * 109.49412 * 181.28635 * 23 12 11 26 26 C 1.46933 * 120.63034 * 174.43875 * 9 7 6 27 27 C 1.35920 * 107.17219 * 359.56441 * 6 5 4 28 28 O 1.34199 * 125.44573 * 359.96606 * 4 3 2 29 29 H 1.09001 * 109.47001 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47178 * 299.99637 * 1 2 3 31 31 H 1.08996 * 109.47534 * 60.00545 * 1 2 3 32 32 H 1.08998 * 109.47160 * 239.99906 * 2 1 3 33 33 H 1.09004 * 109.47253 * 119.99430 * 2 1 3 34 34 H 1.09000 * 109.58811 * 6.58470 * 10 9 7 35 35 H 1.09001 * 109.58688 * 246.15836 * 10 9 7 36 36 H 1.08996 * 109.49825 * 174.58607 * 11 10 9 37 37 H 1.08997 * 109.49418 * 294.65397 * 11 10 9 38 38 H 0.97005 * 119.99414 * 94.99519 * 14 12 11 39 39 H 0.96999 * 120.00139 * 179.97438 * 18 17 15 40 40 H 1.09007 * 109.47430 * 300.13178 * 25 23 12 41 41 H 1.09004 * 109.47414 * 60.13092 * 25 23 12 42 42 H 1.09003 * 109.47139 * 180.13156 * 25 23 12 43 43 H 1.08998 * 109.58131 * 353.41244 * 26 9 7 44 44 H 1.08995 * 109.58692 * 113.70076 * 26 9 7 45 45 H 1.07998 * 126.45735 * 180.22287 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3481 1.5247 -0.0005 5 7 3.9593 2.6783 0.0049 6 6 5.3038 2.4526 -0.0014 7 6 6.3628 3.4773 -0.0020 8 8 7.5275 3.1482 0.1186 9 7 6.0408 4.7791 -0.1362 10 6 4.6539 5.1835 -0.4037 11 6 4.2288 6.2131 0.6481 12 6 5.2302 7.3704 0.6580 13 1 5.2687 7.8259 -0.3315 14 7 4.8084 8.3723 1.6401 15 6 3.8994 9.3345 1.2893 16 1 3.4931 9.3545 0.2889 17 6 3.4993 10.2836 2.2200 18 7 3.9941 10.2589 3.4395 19 14 2.2599 11.5966 1.7415 20 1 1.8605 11.4071 0.3238 21 1 1.0616 11.4868 2.6117 22 1 2.8717 12.9393 1.9086 23 6 6.6179 6.8433 1.0302 24 1 6.5754 6.3665 2.0094 25 6 7.6116 8.0060 1.0712 26 6 7.0701 5.8210 -0.0173 27 6 5.4846 1.1055 -0.0010 28 8 4.2630 0.5429 -0.0004 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 4.0017 4.3120 -0.3465 35 1 4.5878 5.6273 -1.3971 36 1 3.2364 6.5927 0.4053 37 1 4.2078 5.7418 1.6307 38 1 5.1730 8.3540 2.5388 39 1 3.7148 10.9222 4.0897 40 1 7.6529 8.4833 0.0921 41 1 7.2895 8.7332 1.8166 42 1 8.6003 7.6298 1.3340 43 1 8.0120 5.3700 0.2950 44 1 7.2028 6.3151 -0.9797 45 1 6.4308 0.5849 -0.0017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036094809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:24 Heat of formation + Delta-G solvation = -43.834186 kcal Electronic energy + Delta-G solvation = -27875.139122 eV Core-core repulsion = 23895.010736 eV Total energy + Delta-G solvation = -3980.128387 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.59721 -41.20711 -39.98109 -38.99963 -36.47171 -35.94132 -34.31478 -33.05386 -32.83138 -31.06232 -30.61294 -27.98908 -26.82868 -25.27261 -24.67674 -23.85820 -23.42945 -22.98647 -21.47499 -20.78286 -19.42773 -19.03906 -18.67121 -18.31189 -17.50086 -17.01954 -16.75957 -16.62791 -16.14427 -16.00610 -15.66643 -15.46439 -15.12691 -14.85382 -14.53861 -14.36532 -14.00611 -13.92833 -13.65251 -13.54425 -13.33458 -12.98524 -12.87652 -12.76934 -12.66212 -12.56098 -12.46081 -12.19828 -12.07953 -11.84275 -11.79063 -11.73020 -11.48782 -11.15165 -11.08851 -10.58547 -9.88809 -9.60500 -8.94155 -7.90307 -5.17784 0.01833 0.81485 0.85765 1.48463 1.48871 1.58843 1.63898 1.95287 2.13920 2.58670 3.15688 3.43237 3.70983 3.78479 3.80700 3.93901 3.95883 3.99759 4.08715 4.19092 4.26056 4.29765 4.39683 4.43963 4.50912 4.59418 4.73415 4.79229 4.79958 4.85134 4.87449 4.95041 5.04740 5.14252 5.19279 5.26503 5.35321 5.44440 5.51807 5.56744 5.62515 5.83657 6.25573 6.31548 6.46816 6.97537 7.37508 8.13274 8.37616 9.33568 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012032 B = 0.003394 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.485108 B = 8248.097582 C =10232.372980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.041 3.959 3 O -0.258 6.258 4 C 0.389 3.611 5 N -0.480 5.480 6 C -0.076 4.076 7 C 0.599 3.401 8 O -0.564 6.564 9 N -0.590 5.590 10 C 0.076 3.924 11 C -0.131 4.131 12 C 0.179 3.821 13 H 0.046 0.954 14 N -0.731 5.731 15 C -0.229 4.229 16 H 0.075 0.925 17 C -0.078 4.078 18 N -0.971 5.971 19 Si 0.969 3.031 20 H -0.266 1.266 21 H -0.297 1.297 22 H -0.295 1.295 23 C -0.100 4.100 24 H 0.052 0.948 25 C -0.128 4.128 26 C 0.126 3.874 27 C 0.036 3.964 28 O -0.213 6.213 29 H 0.112 0.888 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.151 0.849 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.036 0.964 38 H 0.370 0.630 39 H 0.249 0.751 40 H 0.059 0.941 41 H 0.040 0.960 42 H 0.068 0.932 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.853 -25.651 -10.591 27.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.032 4.032 3 O -0.167 6.167 4 C 0.143 3.857 5 N -0.227 5.227 6 C -0.193 4.193 7 C 0.388 3.612 8 O -0.445 6.445 9 N -0.319 5.319 10 C -0.047 4.047 11 C -0.172 4.172 12 C 0.070 3.930 13 H 0.064 0.936 14 N -0.370 5.370 15 C -0.361 4.361 16 H 0.093 0.907 17 C -0.269 4.269 18 N -0.623 5.623 19 Si 0.799 3.201 20 H -0.190 1.190 21 H -0.224 1.224 22 H -0.223 1.223 23 C -0.120 4.120 24 H 0.071 0.929 25 C -0.186 4.186 26 C 0.003 3.997 27 C -0.036 4.036 28 O -0.104 6.104 29 H 0.131 0.869 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.168 0.832 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.202 0.798 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.087 0.913 43 H 0.112 0.888 44 H 0.104 0.896 45 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -0.945 -25.069 -10.658 27.257 hybrid contribution -0.479 0.523 0.678 0.981 sum -1.424 -24.546 -9.981 26.536 Atomic orbital electron populations 1.21870 0.90085 1.05054 1.03757 1.23448 0.97786 0.77704 1.04290 1.86451 1.08083 1.33424 1.88738 1.23633 0.84097 0.81604 0.96349 1.70692 1.04595 1.21309 1.26092 1.21524 0.89675 0.94770 1.13377 1.16962 0.86266 0.81763 0.76253 1.90776 1.19142 1.81366 1.53228 1.48018 1.10669 1.05083 1.68137 1.22924 0.81945 1.02252 0.97589 1.22345 1.00161 0.96556 0.98133 1.20454 0.91627 0.88300 0.92599 0.93572 1.42584 1.50741 1.32023 1.11632 1.19631 1.15416 1.04616 0.96473 0.90675 1.25498 1.03195 1.02189 0.96062 1.69834 1.49075 1.38559 1.04795 0.85125 0.78391 0.78916 0.77682 1.18986 1.22414 1.22256 1.21604 0.95774 0.96126 0.98478 0.92939 1.21569 0.97960 0.96977 1.02085 1.21725 0.91131 0.87409 0.99395 1.25570 0.86660 0.91695 0.99716 1.84435 1.15997 1.38396 1.71523 0.86931 0.91704 0.91298 0.89237 0.89712 0.83249 0.91224 0.92358 0.94470 0.79785 0.94262 0.92228 0.94071 0.91261 0.88825 0.89624 0.71302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 71.98 0.74 -0.34 16 2 C 0.04 0.42 6.38 71.98 0.46 0.88 16 3 O -0.26 -5.01 10.19 -64.20 -0.65 -5.66 16 4 C 0.39 8.56 8.98 130.43 1.17 9.73 16 5 N -0.48 -13.09 7.77 -419.40 -3.26 -16.35 16 6 C -0.08 -1.97 6.72 40.31 0.27 -1.69 16 7 C 0.60 18.17 7.68 86.64 0.67 18.84 16 8 O -0.56 -18.56 16.33 -4.12 -0.07 -18.63 16 9 N -0.59 -18.27 2.97 -822.81 -2.45 -20.71 16 10 C 0.08 2.38 6.33 86.37 0.55 2.93 16 11 C -0.13 -5.03 5.66 30.68 0.17 -4.86 16 12 C 0.18 7.28 2.19 45.02 0.10 7.38 16 13 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 14 N -0.73 -37.44 4.41 -322.81 -1.42 -38.87 16 15 C -0.23 -12.83 9.93 84.04 0.83 -11.99 16 16 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 17 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 18 N -0.97 -60.49 13.06 21.65 0.28 -60.20 16 19 Si 0.97 46.91 29.55 68.60 2.03 48.94 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 22 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 23 C -0.10 -3.49 2.46 -10.72 -0.03 -3.52 16 24 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 25 C -0.13 -4.28 9.02 71.98 0.65 -3.63 16 26 C 0.13 3.75 5.70 86.36 0.49 4.24 16 27 C 0.04 0.63 11.94 67.28 0.80 1.44 16 28 O -0.21 -3.67 10.20 18.91 0.19 -3.47 16 29 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.15 4.70 3.66 -52.68 -0.19 4.51 16 35 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.37 20.68 7.51 -92.70 -0.70 19.99 16 39 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 40 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 41 H 0.04 1.65 7.37 -2.39 -0.02 1.63 16 42 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.09 2.74 7.04 -2.39 -0.02 2.72 16 44 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.27 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -72.35 370.13 2.13 -70.23 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: 0.13 Total: 29.38 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 7.35 Total: 15.35 kcal Atomic # 7 Polarization: -129.29 SS G_CDS: -6.85 Total: -136.14 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.53 Total: -27.77 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -72.35 2.13 -70.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036094809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.393 kcal (2) G-P(sol) polarization free energy of solvation -72.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds