Wall clock time and date at job start Tue Mar 31 2020 14:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42897 * 109.47301 * 2 1 4 4 C 1.35353 * 117.00395 * 179.97438 * 3 2 1 5 5 N 1.30553 * 125.45219 * 180.29565 * 4 3 2 6 6 C 1.36324 * 108.38401 * 180.16731 * 5 4 3 7 7 C 1.47366 * 126.41096 * 179.82958 * 6 5 4 8 8 O 1.21625 * 119.99810 * 173.04175 * 7 6 5 9 9 N 1.34781 * 120.00196 * 353.03832 * 7 6 5 10 10 C 1.46929 * 120.62759 * 354.27387 * 9 7 6 11 11 C 1.53189 * 108.77093 * 126.41533 * 10 9 7 12 12 C 1.53038 * 109.31604 * 54.63417 * 11 10 9 13 13 H 1.08999 * 109.46066 * 178.62579 * 12 11 10 14 14 N 1.46501 * 109.45644 * 58.65321 * 12 11 10 15 15 C 1.36935 * 119.99803 * 85.00557 * 14 12 11 16 16 H 1.08006 * 120.00547 * 359.97438 * 15 14 12 17 17 C 1.38809 * 119.99976 * 179.97438 * 15 14 12 18 18 N 1.31622 * 120.00152 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00116 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47190 * 269.99840 * 19 17 15 21 21 H 1.48504 * 109.47245 * 30.00181 * 19 17 15 22 22 H 1.48503 * 109.47109 * 149.99782 * 19 17 15 23 23 C 1.53034 * 109.53898 * 298.63394 * 12 11 10 24 24 H 1.09002 * 109.50062 * 301.41842 * 23 12 11 25 25 C 1.53004 * 109.49908 * 181.31503 * 23 12 11 26 26 C 1.46922 * 120.63281 * 174.29920 * 9 7 6 27 27 C 1.35912 * 107.17563 * 359.56760 * 6 5 4 28 28 O 1.34201 * 125.44375 * 359.97438 * 4 3 2 29 29 H 1.09000 * 109.47382 * 300.00062 * 1 2 3 30 30 H 1.09004 * 109.47263 * 59.99837 * 1 2 3 31 31 H 1.09000 * 109.47323 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47382 * 239.99937 * 2 1 3 33 33 H 1.09004 * 109.47263 * 120.00163 * 2 1 3 34 34 H 1.08994 * 109.58681 * 6.62698 * 10 9 7 35 35 H 1.08997 * 109.70389 * 246.27226 * 10 9 7 36 36 H 1.09001 * 109.49986 * 294.68134 * 11 10 9 37 37 H 1.09002 * 109.49266 * 174.59005 * 11 10 9 38 38 H 0.97001 * 120.00166 * 264.99504 * 14 12 11 39 39 H 0.96996 * 120.00089 * 179.97438 * 18 17 15 40 40 H 1.08993 * 109.46807 * 60.00327 * 25 23 12 41 41 H 1.08997 * 109.46861 * 180.02562 * 25 23 12 42 42 H 1.08999 * 109.46888 * 300.00221 * 25 23 12 43 43 H 1.09000 * 109.58356 * 353.37231 * 26 9 7 44 44 H 1.09001 * 109.58798 * 113.79839 * 26 9 7 45 45 H 1.08001 * 126.45991 * 180.22673 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3482 1.5246 0.0005 5 7 3.9595 2.6782 0.0061 6 6 5.3039 2.4523 0.0009 7 6 6.3630 3.4770 0.0008 8 8 7.5274 3.1479 0.1234 9 7 6.0413 4.7787 -0.1351 10 6 4.6555 5.1827 -0.4092 11 6 4.2258 6.2131 0.6397 12 6 5.2270 7.3705 0.6522 13 1 4.9102 8.1169 1.3806 14 7 5.2842 7.9806 -0.6785 15 6 4.3758 8.9431 -1.0300 16 1 3.6169 9.2522 -0.3264 17 6 4.4303 9.5216 -2.2906 18 7 5.3555 9.1454 -3.1480 19 14 3.1907 10.8341 -2.7704 20 1 2.0037 10.1913 -3.3893 21 1 2.7720 11.5856 -1.5600 22 1 3.8111 11.7689 -3.7434 23 6 6.6130 6.8441 1.0317 24 1 6.5657 6.3679 2.0111 25 6 7.6064 8.0070 1.0759 26 6 7.0698 5.8208 -0.0127 27 6 5.4846 1.1053 0.0016 28 8 4.2630 0.5427 0.0016 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 4.0032 4.3112 -0.3540 35 1 4.5913 5.6247 -1.4034 36 1 4.2009 5.7430 1.6228 37 1 3.2343 6.5924 0.3921 38 1 5.9657 7.7029 -1.3106 39 1 5.3933 9.5493 -4.0290 40 1 7.2794 8.7361 1.8171 41 1 8.5934 7.6315 1.3458 42 1 7.6541 8.4815 0.0958 43 1 8.0104 5.3703 0.3041 44 1 7.2049 6.3157 -0.9745 45 1 6.4308 0.5846 0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036094859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:28 Heat of formation + Delta-G solvation = -17.481480 kcal Electronic energy + Delta-G solvation = -28286.172015 eV Core-core repulsion = 24307.186368 eV Total energy + Delta-G solvation = -3978.985647 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.62204 -39.85741 -39.18008 -37.58589 -35.27809 -34.02948 -32.68296 -32.27775 -31.25638 -29.70811 -29.03062 -26.61677 -25.15754 -24.17638 -23.55113 -23.04429 -22.48727 -21.47871 -20.34285 -18.76285 -18.01391 -17.77883 -17.23859 -16.97753 -16.58149 -15.90241 -15.60691 -15.18552 -14.94230 -14.41293 -14.26343 -13.88032 -13.67702 -13.36247 -13.30665 -13.18630 -13.18000 -12.89866 -12.44274 -12.23185 -12.17217 -11.72063 -11.61925 -11.32932 -11.13696 -11.06877 -10.87390 -10.76140 -10.64284 -10.38334 -10.13754 -10.08012 -9.74077 -9.49191 -9.36232 -8.86546 -8.77690 -8.09848 -6.87583 -5.71161 -2.98624 1.01787 1.67493 1.93819 2.51495 3.25106 3.40048 3.46970 3.52525 3.53682 4.31753 4.36031 4.36922 4.64562 4.67980 4.74442 4.86462 5.21293 5.26484 5.27520 5.35894 5.43304 5.51631 5.53873 5.57497 5.74304 5.79097 5.96380 6.03373 6.09731 6.16828 6.26139 6.34751 6.41812 6.55313 6.60673 6.70212 6.82723 6.90551 6.97788 7.08871 7.19273 7.37614 7.76337 7.80712 8.34491 8.47696 9.59026 10.17099 10.52300 11.51568 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012123 B = 0.003710 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.141112 B = 7544.947591 C = 9155.125461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.244 6.244 4 C 0.381 3.619 5 N -0.444 5.444 6 C -0.033 4.033 7 C 0.594 3.406 8 O -0.551 6.551 9 N -0.577 5.577 10 C 0.073 3.927 11 C -0.142 4.142 12 C 0.176 3.824 13 H 0.049 0.951 14 N -0.718 5.718 15 C -0.233 4.233 16 H 0.069 0.931 17 C -0.014 4.014 18 N -0.934 5.934 19 Si 0.904 3.096 20 H -0.291 1.291 21 H -0.283 1.283 22 H -0.293 1.293 23 C -0.108 4.108 24 H 0.065 0.935 25 C -0.137 4.137 26 C 0.118 3.882 27 C -0.005 4.005 28 O -0.228 6.228 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.138 0.862 35 H 0.076 0.924 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.383 0.617 39 H 0.254 0.746 40 H 0.053 0.947 41 H 0.043 0.957 42 H 0.071 0.929 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.375 -20.327 8.291 22.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.152 6.152 4 C 0.136 3.864 5 N -0.190 5.190 6 C -0.152 4.152 7 C 0.381 3.619 8 O -0.431 6.431 9 N -0.306 5.306 10 C -0.049 4.049 11 C -0.183 4.183 12 C 0.066 3.934 13 H 0.067 0.933 14 N -0.361 5.361 15 C -0.364 4.364 16 H 0.087 0.913 17 C -0.209 4.209 18 N -0.583 5.583 19 Si 0.735 3.265 20 H -0.219 1.219 21 H -0.209 1.209 22 H -0.220 1.220 23 C -0.128 4.128 24 H 0.083 0.917 25 C -0.194 4.194 26 C -0.004 4.004 27 C -0.077 4.077 28 O -0.119 6.119 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.154 0.846 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.218 0.782 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.090 0.910 43 H 0.102 0.898 44 H 0.096 0.904 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -4.464 -19.689 8.338 21.843 hybrid contribution -0.336 -0.076 -0.621 0.710 sum -4.800 -19.766 7.717 21.755 Atomic orbital electron populations 1.21814 0.91233 1.03559 1.04378 1.23048 0.96900 0.79470 1.02952 1.86416 1.09045 1.30689 1.89068 1.23786 0.83404 0.81842 0.97326 1.71065 1.04082 1.19529 1.24313 1.21790 0.90104 0.94004 1.09284 1.16742 0.85898 0.81731 0.77535 1.90785 1.18300 1.81108 1.52904 1.47974 1.11281 1.04438 1.66862 1.22854 0.80694 1.01553 0.99810 1.22416 1.01227 0.97373 0.97255 1.20264 0.91135 0.92589 0.89408 0.93346 1.42462 1.37295 1.45267 1.11050 1.19231 1.07558 1.12269 0.97353 0.91291 1.24688 0.98986 1.00484 0.96771 1.69652 1.35554 1.46036 1.07010 0.86238 0.80775 0.81547 0.77915 1.21892 1.20893 1.21974 1.21700 0.97417 0.95719 0.97926 0.91673 1.21664 0.97020 0.97402 1.03362 1.21730 0.90637 0.87781 1.00259 1.24878 0.85728 0.92777 1.04311 1.84371 1.16270 1.39206 1.72065 0.90912 0.90831 0.89535 0.90818 0.90870 0.84605 0.90609 0.93623 0.91026 0.78164 0.93640 0.92811 0.93809 0.91021 0.89811 0.90394 0.74855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.28 37.15 0.38 -0.35 16 2 C 0.05 0.34 6.38 37.15 0.24 0.57 16 3 O -0.24 -2.67 10.19 -40.98 -0.42 -3.09 16 4 C 0.38 4.83 8.98 52.22 0.47 5.29 16 5 N -0.44 -6.75 7.78 -11.72 -0.09 -6.84 16 6 C -0.03 -0.50 6.72 -82.99 -0.56 -1.06 16 7 C 0.59 10.37 7.68 -12.54 -0.10 10.27 16 8 O -0.55 -10.35 16.33 5.26 0.09 -10.26 16 9 N -0.58 -10.45 2.97 -174.06 -0.52 -10.97 16 10 C 0.07 1.36 6.07 -3.71 -0.02 1.34 16 11 C -0.14 -2.65 5.78 -26.61 -0.15 -2.81 16 12 C 0.18 3.52 2.53 -67.89 -0.17 3.35 16 13 H 0.05 0.99 8.08 -51.93 -0.42 0.58 16 14 N -0.72 -17.34 3.64 -53.39 -0.19 -17.53 16 15 C -0.23 -6.30 9.93 -15.06 -0.15 -6.45 16 16 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 17 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 18 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 19 Si 0.90 22.37 29.55 -169.99 -5.02 17.35 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 C -0.11 -1.88 2.67 -90.50 -0.24 -2.12 16 24 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 25 C -0.14 -2.28 9.05 37.16 0.34 -1.95 16 26 C 0.12 2.13 5.40 -3.71 -0.02 2.11 16 27 C 0.00 -0.06 11.94 29.90 0.36 0.30 16 28 O -0.23 -2.47 10.20 -17.75 -0.18 -2.66 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.14 2.45 3.66 -77.11 -0.28 2.17 16 35 H 0.08 1.65 7.74 -51.93 -0.40 1.25 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.38 9.88 5.93 -40.82 -0.24 9.63 16 39 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 1.38 7.54 -51.93 -0.39 0.99 16 43 H 0.08 1.46 7.04 -51.93 -0.37 1.09 16 44 H 0.08 1.54 6.64 -51.93 -0.34 1.20 16 45 H 0.24 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 366.19 15.07 5.52 5.52 Total: -1.00 -32.21 366.19 -6.47 -38.68 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -6.64 Total: 8.92 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 0.27 Total: 8.02 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: -0.08 Total: -62.48 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.51 Total: -16.01 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.21 -6.47 -38.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036094859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.201 kcal (2) G-P(sol) polarization free energy of solvation -32.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds