Wall clock time and date at job start Tue Mar 31 2020 14:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42897 * 109.47301 * 2 1 4 4 C 1.35353 * 117.00395 * 179.97438 * 3 2 1 5 5 N 1.30553 * 125.45219 * 180.29565 * 4 3 2 6 6 C 1.36324 * 108.38401 * 180.16731 * 5 4 3 7 7 C 1.47366 * 126.41096 * 179.82958 * 6 5 4 8 8 O 1.21625 * 119.99810 * 173.04175 * 7 6 5 9 9 N 1.34781 * 120.00196 * 353.03832 * 7 6 5 10 10 C 1.46929 * 120.62759 * 354.27387 * 9 7 6 11 11 C 1.53189 * 108.77093 * 126.41533 * 10 9 7 12 12 C 1.53038 * 109.31604 * 54.63417 * 11 10 9 13 13 H 1.08999 * 109.46066 * 178.62579 * 12 11 10 14 14 N 1.46501 * 109.45644 * 58.65321 * 12 11 10 15 15 C 1.36935 * 119.99803 * 85.00557 * 14 12 11 16 16 H 1.08006 * 120.00547 * 359.97438 * 15 14 12 17 17 C 1.38809 * 119.99976 * 179.97438 * 15 14 12 18 18 N 1.31622 * 120.00152 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00116 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47190 * 269.99840 * 19 17 15 21 21 H 1.48504 * 109.47245 * 30.00181 * 19 17 15 22 22 H 1.48503 * 109.47109 * 149.99782 * 19 17 15 23 23 C 1.53034 * 109.53898 * 298.63394 * 12 11 10 24 24 H 1.09002 * 109.50062 * 301.41842 * 23 12 11 25 25 C 1.53004 * 109.49908 * 181.31503 * 23 12 11 26 26 C 1.46922 * 120.63281 * 174.29920 * 9 7 6 27 27 C 1.35912 * 107.17563 * 359.56760 * 6 5 4 28 28 O 1.34201 * 125.44375 * 359.97438 * 4 3 2 29 29 H 1.09000 * 109.47382 * 300.00062 * 1 2 3 30 30 H 1.09004 * 109.47263 * 59.99837 * 1 2 3 31 31 H 1.09000 * 109.47323 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47382 * 239.99937 * 2 1 3 33 33 H 1.09004 * 109.47263 * 120.00163 * 2 1 3 34 34 H 1.08994 * 109.58681 * 6.62698 * 10 9 7 35 35 H 1.08997 * 109.70389 * 246.27226 * 10 9 7 36 36 H 1.09001 * 109.49986 * 294.68134 * 11 10 9 37 37 H 1.09002 * 109.49266 * 174.59005 * 11 10 9 38 38 H 0.97001 * 120.00166 * 264.99504 * 14 12 11 39 39 H 0.96996 * 120.00089 * 179.97438 * 18 17 15 40 40 H 1.08993 * 109.46807 * 60.00327 * 25 23 12 41 41 H 1.08997 * 109.46861 * 180.02562 * 25 23 12 42 42 H 1.08999 * 109.46888 * 300.00221 * 25 23 12 43 43 H 1.09000 * 109.58356 * 353.37231 * 26 9 7 44 44 H 1.09001 * 109.58798 * 113.79839 * 26 9 7 45 45 H 1.08001 * 126.45991 * 180.22673 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3482 1.5246 0.0005 5 7 3.9595 2.6782 0.0061 6 6 5.3039 2.4523 0.0009 7 6 6.3630 3.4770 0.0008 8 8 7.5274 3.1479 0.1234 9 7 6.0413 4.7787 -0.1351 10 6 4.6555 5.1827 -0.4092 11 6 4.2258 6.2131 0.6397 12 6 5.2270 7.3705 0.6522 13 1 4.9102 8.1169 1.3806 14 7 5.2842 7.9806 -0.6785 15 6 4.3758 8.9431 -1.0300 16 1 3.6169 9.2522 -0.3264 17 6 4.4303 9.5216 -2.2906 18 7 5.3555 9.1454 -3.1480 19 14 3.1907 10.8341 -2.7704 20 1 2.0037 10.1913 -3.3893 21 1 2.7720 11.5856 -1.5600 22 1 3.8111 11.7689 -3.7434 23 6 6.6130 6.8441 1.0317 24 1 6.5657 6.3679 2.0111 25 6 7.6064 8.0070 1.0759 26 6 7.0698 5.8208 -0.0127 27 6 5.4846 1.1053 0.0016 28 8 4.2630 0.5427 0.0016 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 4.0032 4.3112 -0.3540 35 1 4.5913 5.6247 -1.4034 36 1 4.2009 5.7430 1.6228 37 1 3.2343 6.5924 0.3921 38 1 5.9657 7.7029 -1.3106 39 1 5.3933 9.5493 -4.0290 40 1 7.2794 8.7361 1.8171 41 1 8.5934 7.6315 1.3458 42 1 7.6541 8.4815 0.0958 43 1 8.0104 5.3703 0.3041 44 1 7.2049 6.3157 -0.9745 45 1 6.4308 0.5846 0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036094859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:27 Heat of formation + Delta-G solvation = -40.065882 kcal Electronic energy + Delta-G solvation = -28287.151348 eV Core-core repulsion = 24307.186368 eV Total energy + Delta-G solvation = -3979.964981 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.59402 -41.24959 -39.98285 -39.08078 -36.39424 -35.68302 -34.32591 -32.99110 -32.82173 -30.92572 -30.63360 -27.96566 -26.74613 -25.41446 -24.87535 -24.22929 -23.43055 -22.96544 -21.39292 -20.09848 -19.40173 -19.13695 -18.66371 -18.26954 -17.48217 -16.98847 -16.73735 -16.50141 -16.12261 -16.08433 -15.77740 -15.52419 -14.97304 -14.83938 -14.52246 -14.39341 -14.18964 -13.92333 -13.66270 -13.55534 -13.09652 -12.98523 -12.85102 -12.69063 -12.65848 -12.54795 -12.45411 -12.19397 -12.09959 -11.92746 -11.78779 -11.58180 -11.46695 -11.17201 -11.00991 -10.52015 -9.86663 -9.54777 -8.90236 -7.87418 -5.13571 0.02233 0.80794 0.87343 1.49300 1.50187 1.58189 1.64994 1.97206 2.15069 2.60724 3.17828 3.46316 3.71703 3.80178 3.89930 3.94364 3.96575 4.01816 4.13365 4.15738 4.26252 4.30287 4.43901 4.48340 4.53004 4.63919 4.68009 4.78290 4.82015 4.87941 4.91522 5.06385 5.14268 5.15752 5.21213 5.26591 5.31578 5.40556 5.50125 5.60876 5.64716 5.83889 6.30531 6.34461 6.49195 6.99131 7.41429 8.17925 8.42214 9.36127 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012123 B = 0.003710 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.141112 B = 7544.947591 C = 9155.125461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.041 3.959 3 O -0.258 6.258 4 C 0.389 3.611 5 N -0.480 5.480 6 C -0.075 4.075 7 C 0.596 3.404 8 O -0.568 6.568 9 N -0.584 5.584 10 C 0.084 3.916 11 C -0.133 4.133 12 C 0.171 3.829 13 H 0.047 0.953 14 N -0.724 5.724 15 C -0.227 4.227 16 H 0.074 0.926 17 C -0.075 4.075 18 N -0.970 5.970 19 Si 0.966 3.034 20 H -0.292 1.292 21 H -0.271 1.271 22 H -0.300 1.300 23 C -0.098 4.098 24 H 0.086 0.914 25 C -0.130 4.130 26 C 0.122 3.878 27 C 0.037 3.963 28 O -0.212 6.212 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.151 0.849 35 H 0.036 0.964 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.373 0.627 39 H 0.247 0.753 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.039 0.961 43 H 0.092 0.908 44 H 0.051 0.949 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.041 -22.459 9.912 25.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.033 4.033 3 O -0.166 6.166 4 C 0.143 3.857 5 N -0.226 5.226 6 C -0.192 4.192 7 C 0.385 3.615 8 O -0.449 6.449 9 N -0.313 5.313 10 C -0.038 4.038 11 C -0.174 4.174 12 C 0.063 3.937 13 H 0.065 0.935 14 N -0.365 5.365 15 C -0.359 4.359 16 H 0.092 0.908 17 C -0.267 4.267 18 N -0.621 5.621 19 Si 0.796 3.204 20 H -0.219 1.219 21 H -0.196 1.196 22 H -0.227 1.227 23 C -0.118 4.118 24 H 0.104 0.896 25 C -0.188 4.188 26 C 0.000 4.000 27 C -0.036 4.036 28 O -0.103 6.103 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.131 0.869 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.167 0.833 35 H 0.054 0.946 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.206 0.794 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.058 0.942 43 H 0.111 0.889 44 H 0.069 0.931 45 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -5.159 -21.845 10.009 24.577 hybrid contribution -0.168 0.409 -1.062 1.150 sum -5.327 -21.436 8.948 23.831 Atomic orbital electron populations 1.21868 0.89996 1.05063 1.03775 1.23456 0.97842 0.77711 1.04283 1.86450 1.07963 1.33436 1.88768 1.23633 0.84130 0.81572 0.96350 1.70708 1.04566 1.21358 1.26010 1.21483 0.89663 0.94723 1.13352 1.17009 0.86370 0.81674 0.76470 1.90761 1.19138 1.81316 1.53675 1.47970 1.10737 1.05030 1.67563 1.22684 0.81650 1.01885 0.97572 1.22286 0.99942 0.96850 0.98282 1.20468 0.93213 0.92804 0.87261 0.93509 1.42568 1.36449 1.45012 1.12450 1.19587 1.07342 1.11829 0.97188 0.90833 1.25411 1.01062 1.03076 0.97118 1.69814 1.37589 1.47640 1.07103 0.85242 0.78462 0.79080 0.77605 1.21910 1.19553 1.22683 1.21627 0.95834 0.95786 0.98508 0.89557 1.21592 0.98318 0.97109 1.01733 1.21619 0.91256 0.87983 0.99131 1.25542 0.86682 0.91590 0.99780 1.84429 1.15931 1.38347 1.71565 0.91344 0.91603 0.86909 0.89645 0.89348 0.83319 0.94575 0.91538 0.92351 0.79364 0.94387 0.92127 0.91251 0.94162 0.88922 0.93051 0.71300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 71.98 0.74 -0.39 16 2 C 0.04 0.44 6.38 71.98 0.46 0.90 16 3 O -0.26 -5.25 10.19 -64.22 -0.65 -5.91 16 4 C 0.39 9.17 8.98 130.43 1.17 10.34 16 5 N -0.48 -14.16 7.78 -419.40 -3.26 -17.42 16 6 C -0.08 -2.14 6.72 40.31 0.27 -1.87 16 7 C 0.60 20.39 7.68 86.65 0.67 21.05 16 8 O -0.57 -20.68 16.33 -4.11 -0.07 -20.75 16 9 N -0.58 -21.28 2.97 -822.85 -2.45 -23.73 16 10 C 0.08 3.23 6.07 86.36 0.52 3.76 16 11 C -0.13 -4.98 5.78 30.67 0.18 -4.80 16 12 C 0.17 6.85 2.53 45.02 0.11 6.97 16 13 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 14 N -0.72 -35.92 3.64 -322.82 -1.18 -37.10 16 15 C -0.23 -12.51 9.93 84.03 0.83 -11.68 16 16 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 17 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 18 N -0.97 -59.82 13.06 21.65 0.28 -59.54 16 19 Si 0.97 46.80 29.55 68.60 2.03 48.82 16 20 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 21 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 23 C -0.10 -3.35 2.67 -10.72 -0.03 -3.37 16 24 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 25 C -0.13 -4.25 9.05 71.98 0.65 -3.60 16 26 C 0.12 4.45 5.40 86.36 0.47 4.92 16 27 C 0.04 0.72 11.94 67.28 0.80 1.52 16 28 O -0.21 -3.98 10.20 18.90 0.19 -3.79 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.09 0.69 8.14 -2.38 -0.02 0.68 16 34 H 0.15 5.44 3.66 -52.09 -0.19 5.25 16 35 H 0.04 1.65 7.74 -2.39 -0.02 1.63 16 36 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.37 20.11 5.93 -92.71 -0.55 19.56 16 39 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 40 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.04 1.57 7.54 -2.39 -0.02 1.55 16 43 H 0.09 3.19 7.04 -2.39 -0.02 3.17 16 44 H 0.05 2.13 6.64 -2.39 -0.02 2.12 16 45 H 0.27 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -71.06 366.19 2.50 -68.56 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: 0.28 Total: 30.94 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: 7.32 Total: 19.90 kcal Atomic # 7 Polarization: -131.18 SS G_CDS: -6.60 Total: -137.78 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.53 Total: -30.45 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.82 kcal Total: -71.06 2.50 -68.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036094859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.496 kcal (2) G-P(sol) polarization free energy of solvation -71.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds