Wall clock time and date at job start Tue Mar 31 2020 14:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.47092 * 2 1 4 4 C 1.35359 * 116.99848 * 180.02562 * 3 2 1 5 5 N 1.30549 * 125.44462 * 180.02562 * 4 3 2 6 6 C 1.36332 * 108.38369 * 179.97438 * 5 4 3 7 7 C 1.47361 * 126.41701 * 179.97438 * 6 5 4 8 8 O 1.21622 * 120.00255 * 186.72748 * 7 6 5 9 9 N 1.34778 * 119.99825 * 6.73226 * 7 6 5 10 10 C 1.46926 * 120.62984 * 6.23728 * 9 7 6 11 11 C 1.53196 * 108.77819 * 233.58723 * 10 9 7 12 12 C 1.53040 * 109.31107 * 305.36895 * 11 10 9 13 13 H 1.09000 * 109.46207 * 301.34215 * 12 11 10 14 14 N 1.46501 * 109.45999 * 181.38481 * 12 11 10 15 15 C 1.36935 * 120.00242 * 84.99714 * 14 12 11 16 16 H 1.08004 * 119.99896 * 0.02562 * 15 14 12 17 17 C 1.38805 * 120.00244 * 179.97438 * 15 14 12 18 18 N 1.31626 * 120.00186 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99936 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47054 * 89.99714 * 19 17 15 21 21 H 1.48500 * 109.47009 * 209.99742 * 19 17 15 22 22 H 1.48502 * 109.46948 * 329.99342 * 19 17 15 23 23 C 1.53044 * 109.53978 * 61.36307 * 12 11 10 24 24 H 1.08999 * 109.49868 * 58.58694 * 23 12 11 25 25 C 1.53004 * 109.49557 * 178.65236 * 23 12 11 26 26 C 1.46926 * 120.63184 * 185.96161 * 9 7 6 27 27 C 1.35921 * 107.16974 * 359.97438 * 6 5 4 28 28 O 1.34198 * 125.44586 * 359.97075 * 4 3 2 29 29 H 1.08996 * 109.46977 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47217 * 300.00163 * 1 2 3 31 31 H 1.09002 * 109.47119 * 60.00270 * 1 2 3 32 32 H 1.09001 * 109.47217 * 239.99837 * 2 1 3 33 33 H 1.09002 * 109.47119 * 119.99730 * 2 1 3 34 34 H 1.08991 * 109.58901 * 353.37712 * 10 9 7 35 35 H 1.09006 * 109.58700 * 113.80117 * 10 9 7 36 36 H 1.09002 * 109.49533 * 65.31427 * 11 10 9 37 37 H 1.08995 * 109.49786 * 185.41564 * 11 10 9 38 38 H 0.96994 * 119.99678 * 264.99828 * 14 12 11 39 39 H 0.97002 * 119.99707 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.47035 * 59.99959 * 25 23 12 41 41 H 1.09002 * 109.46756 * 179.97438 * 25 23 12 42 42 H 1.09005 * 109.47229 * 299.99868 * 25 23 12 43 43 H 1.08994 * 109.58750 * 246.20175 * 26 9 7 44 44 H 1.09006 * 109.58688 * 6.62425 * 26 9 7 45 45 H 1.08004 * 126.45247 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3482 1.5246 -0.0005 5 7 3.9595 2.6781 -0.0001 6 6 5.3040 2.4523 -0.0004 7 6 6.3631 3.4769 -0.0006 8 8 7.5274 3.1479 -0.1241 9 7 6.0415 4.7786 0.1362 10 6 4.6579 5.1817 0.4225 11 6 4.2174 6.2101 -0.6240 12 6 5.2174 7.3683 -0.6478 13 1 5.2690 7.8240 0.3410 14 7 4.7814 8.3696 -1.6243 15 6 3.8765 9.3311 -1.2615 16 1 3.4844 9.3515 -0.2553 17 6 3.4638 10.2802 -2.1865 18 7 2.5935 11.2041 -1.8379 19 14 4.1424 10.2454 -3.9265 20 1 3.2725 9.3970 -4.7802 21 1 4.1765 11.6261 -4.4723 22 1 5.5177 9.6855 -3.9103 23 6 6.6003 6.8425 -1.0395 24 1 6.5443 6.3647 -2.0176 25 6 7.5920 8.0063 -1.0957 26 6 7.0689 5.8210 0.0079 27 6 5.4846 1.1052 -0.0003 28 8 4.2630 0.5427 -0.0005 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.0059 4.3097 0.3749 35 1 4.6050 5.6262 1.4164 36 1 4.1838 5.7383 -1.6061 37 1 3.2280 6.5889 -0.3678 38 1 5.1338 8.3515 -2.5278 39 1 2.3048 11.8671 -2.4845 40 1 7.6486 8.4830 -0.1171 41 1 8.5768 7.6312 -1.3743 42 1 7.2572 8.7336 -1.8354 43 1 7.2086 6.3165 0.9686 44 1 8.0082 5.3708 -0.3134 45 1 6.4309 0.5846 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036094861.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:31 Heat of formation + Delta-G solvation = -16.246919 kcal Electronic energy + Delta-G solvation = -27944.374917 eV Core-core repulsion = 23965.442804 eV Total energy + Delta-G solvation = -3978.932113 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.75281 -40.02285 -39.26928 -37.68038 -35.43798 -34.52644 -32.75109 -32.33721 -31.44154 -29.91317 -29.64754 -26.83383 -25.33825 -24.27799 -23.59374 -22.64111 -22.25958 -21.44666 -20.46421 -19.59297 -18.44178 -17.88901 -17.54118 -17.14688 -16.73466 -15.99122 -15.82984 -15.31033 -14.96550 -14.84276 -14.30892 -13.95256 -13.64417 -13.64053 -13.37173 -13.26456 -13.17824 -13.03922 -12.44276 -12.35795 -12.24058 -12.05057 -11.80735 -11.68631 -11.37858 -11.17836 -11.02513 -10.85569 -10.72712 -10.51241 -10.30254 -10.18389 -9.72861 -9.66100 -9.51502 -8.99775 -8.81264 -8.43066 -7.19266 -5.72385 -3.06795 0.87553 1.57303 1.79237 2.39647 3.01591 3.20216 3.40754 3.44329 3.48712 4.13595 4.29855 4.31531 4.60705 4.61659 4.63440 4.73577 5.08392 5.12274 5.15901 5.21510 5.23552 5.36399 5.38065 5.49211 5.53857 5.64020 5.69825 5.78036 5.83336 6.01673 6.03924 6.21265 6.25671 6.35618 6.42349 6.47047 6.59111 6.75329 6.81040 6.94887 7.10252 7.22200 7.53200 8.04532 8.11353 8.47057 9.25849 9.98758 10.19365 11.46189 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012676 B = 0.003467 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.375457 B = 8075.221186 C = 9741.997095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.243 6.243 4 C 0.385 3.615 5 N -0.447 5.447 6 C -0.038 4.038 7 C 0.599 3.401 8 O -0.546 6.546 9 N -0.584 5.584 10 C 0.065 3.935 11 C -0.143 4.143 12 C 0.186 3.814 13 H 0.055 0.945 14 N -0.746 5.746 15 C -0.237 4.237 16 H 0.090 0.910 17 C 0.004 3.996 18 N -0.936 5.936 19 Si 0.882 3.118 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.277 1.277 23 C -0.113 4.113 24 H 0.068 0.932 25 C -0.137 4.137 26 C 0.120 3.880 27 C -0.002 4.002 28 O -0.226 6.226 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.145 0.855 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.360 0.640 39 H 0.258 0.742 40 H 0.055 0.945 41 H 0.045 0.955 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.345 -25.829 5.490 26.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.151 6.151 4 C 0.140 3.860 5 N -0.193 5.193 6 C -0.156 4.156 7 C 0.386 3.614 8 O -0.425 6.425 9 N -0.314 5.314 10 C -0.057 4.057 11 C -0.184 4.184 12 C 0.077 3.923 13 H 0.073 0.927 14 N -0.388 5.388 15 C -0.367 4.367 16 H 0.108 0.892 17 C -0.192 4.192 18 N -0.584 5.584 19 Si 0.713 3.287 20 H -0.212 1.212 21 H -0.219 1.219 22 H -0.203 1.203 23 C -0.133 4.133 24 H 0.087 0.913 25 C -0.195 4.195 26 C -0.002 4.002 27 C -0.074 4.074 28 O -0.118 6.118 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.161 0.839 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.193 0.807 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.107 0.893 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 2.219 -25.171 5.553 25.871 hybrid contribution 0.518 -0.625 -1.358 1.582 sum 2.737 -25.795 4.195 26.277 Atomic orbital electron populations 1.21820 0.91126 1.03622 1.04463 1.23070 0.96998 0.79329 1.02972 1.86434 1.08908 1.30822 1.88939 1.23747 0.83465 0.81756 0.96997 1.70972 1.03982 1.19701 1.24620 1.21732 0.90134 0.93963 1.09782 1.16733 0.85932 0.81640 0.77126 1.90799 1.18343 1.81079 1.52317 1.47998 1.11183 1.04636 1.67569 1.23021 0.81497 1.02844 0.98387 1.22518 1.01457 0.96214 0.98187 1.20239 0.89655 0.88588 0.93861 0.92651 1.42772 1.52554 1.33254 1.10195 1.19069 1.15422 1.03861 0.98368 0.89208 1.24644 0.99213 0.97735 0.97591 1.69703 1.35530 1.18704 1.34446 0.86583 0.78836 0.76794 0.86503 1.21234 1.21878 1.20331 1.21863 0.97159 0.95613 0.98658 0.91339 1.21676 0.97173 0.97836 1.02811 1.21854 0.91148 0.87818 0.99411 1.24896 0.85810 0.92735 1.03923 1.84385 1.16247 1.39186 1.71965 0.89482 0.90838 0.90793 0.90797 0.90809 0.83882 0.92163 0.92538 0.90305 0.80724 0.93168 0.92562 0.93610 0.91381 0.91089 0.89276 0.74819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 10.28 37.16 0.38 -0.29 16 2 C 0.05 0.30 6.38 37.16 0.24 0.54 16 3 O -0.24 -2.46 10.19 -41.00 -0.42 -2.87 16 4 C 0.39 4.42 8.98 52.22 0.47 4.89 16 5 N -0.45 -6.12 7.78 -11.71 -0.09 -6.21 16 6 C -0.04 -0.50 6.72 -82.99 -0.56 -1.06 16 7 C 0.60 9.11 7.68 -12.55 -0.10 9.01 16 8 O -0.55 -9.11 16.34 5.26 0.09 -9.02 16 9 N -0.58 -8.94 2.97 -173.79 -0.52 -9.46 16 10 C 0.06 1.01 6.32 -3.71 -0.02 0.98 16 11 C -0.14 -2.59 5.66 -26.61 -0.15 -2.74 16 12 C 0.19 3.60 2.19 -67.89 -0.15 3.45 16 13 H 0.06 1.11 8.08 -51.93 -0.42 0.70 16 14 N -0.75 -17.54 4.21 -53.38 -0.22 -17.77 16 15 C -0.24 -6.63 10.41 -15.06 -0.16 -6.79 16 16 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 17 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 18 N -0.94 -29.48 13.97 55.49 0.78 -28.71 16 19 Si 0.88 22.37 27.74 -169.99 -4.71 17.65 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 22 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 23 C -0.11 -1.86 2.47 -90.27 -0.22 -2.08 16 24 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 25 C -0.14 -2.16 9.03 37.16 0.34 -1.83 16 26 C 0.12 1.77 5.73 -3.49 -0.02 1.75 16 27 C 0.00 -0.02 11.94 29.90 0.36 0.34 16 28 O -0.23 -2.19 10.20 -17.73 -0.18 -2.37 16 29 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.14 2.21 3.67 -76.65 -0.28 1.93 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 38 H 0.36 8.47 5.37 -40.82 -0.22 8.25 16 39 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 1.23 7.36 -51.93 -0.38 0.84 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.09 1.30 7.04 -51.93 -0.37 0.94 16 45 H 0.24 1.51 8.06 -52.48 -0.42 1.08 16 LS Contribution 367.05 15.07 5.53 5.53 Total: -1.00 -33.91 367.05 -6.20 -40.11 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -6.75 Total: 6.91 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 0.31 Total: 6.19 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: -0.06 Total: -62.14 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.51 Total: -14.27 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.71 Total: 17.65 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.91 -6.20 -40.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036094861.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.865 kcal (2) G-P(sol) polarization free energy of solvation -33.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds