Wall clock time and date at job start Tue Mar 31 2020 14:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.47092 * 2 1 4 4 C 1.35359 * 116.99848 * 180.02562 * 3 2 1 5 5 N 1.30549 * 125.44462 * 180.02562 * 4 3 2 6 6 C 1.36332 * 108.38369 * 179.97438 * 5 4 3 7 7 C 1.47361 * 126.41701 * 179.97438 * 6 5 4 8 8 O 1.21622 * 120.00255 * 186.72748 * 7 6 5 9 9 N 1.34778 * 119.99825 * 6.73226 * 7 6 5 10 10 C 1.46926 * 120.62984 * 6.23728 * 9 7 6 11 11 C 1.53196 * 108.77819 * 233.58723 * 10 9 7 12 12 C 1.53040 * 109.31107 * 305.36895 * 11 10 9 13 13 H 1.09000 * 109.46207 * 301.34215 * 12 11 10 14 14 N 1.46501 * 109.45999 * 181.38481 * 12 11 10 15 15 C 1.36935 * 120.00242 * 84.99714 * 14 12 11 16 16 H 1.08004 * 119.99896 * 0.02562 * 15 14 12 17 17 C 1.38805 * 120.00244 * 179.97438 * 15 14 12 18 18 N 1.31626 * 120.00186 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99936 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47054 * 89.99714 * 19 17 15 21 21 H 1.48500 * 109.47009 * 209.99742 * 19 17 15 22 22 H 1.48502 * 109.46948 * 329.99342 * 19 17 15 23 23 C 1.53044 * 109.53978 * 61.36307 * 12 11 10 24 24 H 1.08999 * 109.49868 * 58.58694 * 23 12 11 25 25 C 1.53004 * 109.49557 * 178.65236 * 23 12 11 26 26 C 1.46926 * 120.63184 * 185.96161 * 9 7 6 27 27 C 1.35921 * 107.16974 * 359.97438 * 6 5 4 28 28 O 1.34198 * 125.44586 * 359.97075 * 4 3 2 29 29 H 1.08996 * 109.46977 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47217 * 300.00163 * 1 2 3 31 31 H 1.09002 * 109.47119 * 60.00270 * 1 2 3 32 32 H 1.09001 * 109.47217 * 239.99837 * 2 1 3 33 33 H 1.09002 * 109.47119 * 119.99730 * 2 1 3 34 34 H 1.08991 * 109.58901 * 353.37712 * 10 9 7 35 35 H 1.09006 * 109.58700 * 113.80117 * 10 9 7 36 36 H 1.09002 * 109.49533 * 65.31427 * 11 10 9 37 37 H 1.08995 * 109.49786 * 185.41564 * 11 10 9 38 38 H 0.96994 * 119.99678 * 264.99828 * 14 12 11 39 39 H 0.97002 * 119.99707 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.47035 * 59.99959 * 25 23 12 41 41 H 1.09002 * 109.46756 * 179.97438 * 25 23 12 42 42 H 1.09005 * 109.47229 * 299.99868 * 25 23 12 43 43 H 1.08994 * 109.58750 * 246.20175 * 26 9 7 44 44 H 1.09006 * 109.58688 * 6.62425 * 26 9 7 45 45 H 1.08004 * 126.45247 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3482 1.5246 -0.0005 5 7 3.9595 2.6781 -0.0001 6 6 5.3040 2.4523 -0.0004 7 6 6.3631 3.4769 -0.0006 8 8 7.5274 3.1479 -0.1241 9 7 6.0415 4.7786 0.1362 10 6 4.6579 5.1817 0.4225 11 6 4.2174 6.2101 -0.6240 12 6 5.2174 7.3683 -0.6478 13 1 5.2690 7.8240 0.3410 14 7 4.7814 8.3696 -1.6243 15 6 3.8765 9.3311 -1.2615 16 1 3.4844 9.3515 -0.2553 17 6 3.4638 10.2802 -2.1865 18 7 2.5935 11.2041 -1.8379 19 14 4.1424 10.2454 -3.9265 20 1 3.2725 9.3970 -4.7802 21 1 4.1765 11.6261 -4.4723 22 1 5.5177 9.6855 -3.9103 23 6 6.6003 6.8425 -1.0395 24 1 6.5443 6.3647 -2.0176 25 6 7.5920 8.0063 -1.0957 26 6 7.0689 5.8210 0.0079 27 6 5.4846 1.1052 -0.0003 28 8 4.2630 0.5427 -0.0005 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.0059 4.3097 0.3749 35 1 4.6050 5.6262 1.4164 36 1 4.1838 5.7383 -1.6061 37 1 3.2280 6.5889 -0.3678 38 1 5.1338 8.3515 -2.5278 39 1 2.3048 11.8671 -2.4845 40 1 7.6486 8.4830 -0.1171 41 1 8.5768 7.6312 -1.3743 42 1 7.2572 8.7336 -1.8354 43 1 7.2086 6.3165 0.9686 44 1 8.0082 5.3708 -0.3134 45 1 6.4309 0.5846 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036094861.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:30 Heat of formation + Delta-G solvation = -41.011478 kcal Electronic energy + Delta-G solvation = -27945.448789 eV Core-core repulsion = 23965.442804 eV Total energy + Delta-G solvation = -3980.005985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.59890 -41.22479 -39.98524 -39.06498 -36.52058 -36.00202 -34.34456 -33.19932 -32.84034 -31.51412 -30.64428 -28.00920 -26.91164 -25.15700 -24.62103 -23.75615 -23.43806 -22.93127 -21.54877 -20.95584 -19.58475 -19.31774 -18.67239 -18.30808 -17.50257 -17.02617 -16.76747 -16.62258 -16.13706 -16.11371 -15.90398 -15.29255 -15.08459 -14.86389 -14.56295 -14.44857 -14.20353 -13.93193 -13.73825 -13.56162 -13.52600 -13.13957 -12.94307 -12.82748 -12.66512 -12.56078 -12.42812 -12.26859 -12.03192 -11.87605 -11.79350 -11.78267 -11.50207 -11.19709 -11.12460 -10.63233 -9.89288 -9.61904 -9.24827 -7.99523 -5.31431 0.01715 0.81374 0.85652 1.37572 1.39991 1.47179 1.63856 1.94318 2.13387 2.49706 3.14723 3.32335 3.54077 3.70872 3.75698 3.93610 3.95147 3.96787 4.03959 4.13373 4.25372 4.29020 4.36920 4.39402 4.48731 4.57175 4.71222 4.74809 4.79618 4.82170 4.87090 4.90632 5.02900 5.12232 5.17562 5.23175 5.32814 5.40062 5.48263 5.60194 5.78576 5.83979 6.24364 6.24958 6.46293 6.96977 7.10419 7.86966 8.06548 9.22263 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012676 B = 0.003467 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.375457 B = 8075.221186 C = 9741.997095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.042 3.958 3 O -0.259 6.259 4 C 0.388 3.612 5 N -0.480 5.480 6 C -0.077 4.077 7 C 0.601 3.399 8 O -0.563 6.563 9 N -0.590 5.590 10 C 0.076 3.924 11 C -0.132 4.132 12 C 0.181 3.819 13 H 0.046 0.954 14 N -0.747 5.747 15 C -0.219 4.219 16 H 0.058 0.942 17 C -0.063 4.063 18 N -0.985 5.985 19 Si 0.949 3.051 20 H -0.284 1.284 21 H -0.297 1.297 22 H -0.252 1.252 23 C -0.103 4.103 24 H 0.063 0.937 25 C -0.133 4.133 26 C 0.125 3.875 27 C 0.036 3.964 28 O -0.213 6.213 29 H 0.112 0.888 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.151 0.849 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.363 0.637 39 H 0.256 0.744 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.044 0.956 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.924 -28.810 5.117 29.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.032 4.032 3 O -0.167 6.167 4 C 0.143 3.857 5 N -0.227 5.227 6 C -0.194 4.194 7 C 0.389 3.611 8 O -0.444 6.444 9 N -0.320 5.320 10 C -0.047 4.047 11 C -0.173 4.173 12 C 0.073 3.927 13 H 0.064 0.936 14 N -0.389 5.389 15 C -0.350 4.350 16 H 0.076 0.924 17 C -0.255 4.255 18 N -0.636 5.636 19 Si 0.777 3.223 20 H -0.210 1.210 21 H -0.223 1.223 22 H -0.177 1.177 23 C -0.123 4.123 24 H 0.082 0.918 25 C -0.191 4.191 26 C 0.003 3.997 27 C -0.037 4.037 28 O -0.104 6.104 29 H 0.131 0.869 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.168 0.832 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.196 0.804 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.102 0.898 44 H 0.115 0.885 45 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 3.822 -28.212 5.197 28.941 hybrid contribution -0.034 0.155 -1.143 1.154 sum 3.788 -28.058 4.054 28.601 Atomic orbital electron populations 1.21872 0.90145 1.05044 1.03742 1.23443 0.97746 0.77706 1.04297 1.86455 1.08144 1.33415 1.88732 1.23633 0.84081 0.81614 0.96383 1.70702 1.04615 1.21304 1.26069 1.21538 0.89680 0.94779 1.13390 1.16930 0.86217 0.81704 0.76226 1.90779 1.19097 1.81323 1.53160 1.48011 1.10842 1.05129 1.67987 1.22887 0.82112 1.02242 0.97422 1.22321 0.99944 0.96365 0.98682 1.20442 0.91814 0.87930 0.92472 0.93574 1.42763 1.51761 1.33270 1.11097 1.19005 1.14982 1.04157 0.96873 0.92383 1.25402 1.00191 0.97800 1.02058 1.69878 1.37759 1.20033 1.35942 0.85493 0.79325 0.76503 0.80962 1.21039 1.22349 1.17682 1.21742 0.95261 0.96299 0.98977 0.91834 1.21636 0.98242 0.96936 1.02303 1.21827 0.91204 0.87346 0.99366 1.25576 0.86649 0.91727 0.99705 1.84436 1.16021 1.38414 1.71505 0.86929 0.91385 0.91678 0.89625 0.89285 0.83244 0.91572 0.93463 0.92625 0.80437 0.93510 0.92292 0.90799 0.93717 0.89831 0.88452 0.71303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 71.98 0.74 -0.34 16 2 C 0.04 0.41 6.38 71.98 0.46 0.87 16 3 O -0.26 -4.95 10.19 -64.28 -0.66 -5.60 16 4 C 0.39 8.33 8.98 130.43 1.17 9.50 16 5 N -0.48 -12.69 7.78 -419.39 -3.26 -15.95 16 6 C -0.08 -1.89 6.72 40.31 0.27 -1.62 16 7 C 0.60 17.27 7.68 86.64 0.67 17.94 16 8 O -0.56 -17.56 16.34 -4.10 -0.07 -17.62 16 9 N -0.59 -17.33 2.97 -821.99 -2.44 -19.77 16 10 C 0.08 2.33 6.32 86.36 0.55 2.88 16 11 C -0.13 -4.87 5.66 30.67 0.17 -4.70 16 12 C 0.18 7.02 2.19 45.02 0.10 7.12 16 13 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 14 N -0.75 -35.25 4.21 -322.81 -1.36 -36.61 16 15 C -0.22 -12.56 10.41 84.03 0.87 -11.68 16 16 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 17 C -0.06 -3.79 5.50 84.86 0.47 -3.32 16 18 N -0.98 -63.96 13.97 21.65 0.30 -63.65 16 19 Si 0.95 46.60 27.74 68.60 1.90 48.50 16 20 H -0.28 -13.78 7.11 99.48 0.71 -13.08 16 21 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 22 H -0.25 -11.21 6.52 99.48 0.65 -10.56 16 23 C -0.10 -3.25 2.47 -10.57 -0.03 -3.28 16 24 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 25 C -0.13 -3.96 9.03 71.98 0.65 -3.31 16 26 C 0.12 3.46 5.73 86.51 0.50 3.96 16 27 C 0.04 0.60 11.94 67.28 0.80 1.40 16 28 O -0.21 -3.52 10.20 18.97 0.19 -3.33 16 29 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.15 4.59 3.67 -51.20 -0.19 4.41 16 35 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.36 16.74 5.37 -92.71 -0.50 16.25 16 39 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 40 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.04 1.54 7.36 -2.38 -0.02 1.52 16 43 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.10 2.60 7.04 -2.38 -0.02 2.59 16 45 H 0.27 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -74.82 367.05 2.28 -72.54 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: 0.27 Total: 26.08 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 7.39 Total: 15.41 kcal Atomic # 7 Polarization: -129.22 SS G_CDS: -6.76 Total: -135.98 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.53 Total: -26.55 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.90 Total: 48.50 kcal Total: -74.82 2.28 -72.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036094861.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.529 kcal (2) G-P(sol) polarization free energy of solvation -74.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds