Wall clock time and date at job start Tue Mar 31 2020 14:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42902 * 109.47042 * 2 1 4 4 C 1.35729 * 117.00394 * 180.02562 * 3 2 1 5 5 C 1.41850 * 126.79004 * 179.97438 * 4 3 2 6 6 C 1.36661 * 103.81461 * 179.97438 * 5 4 3 7 7 C 1.47539 * 126.88106 * 179.97438 * 6 5 4 8 8 O 1.21578 * 119.99959 * 353.58215 * 7 6 5 9 9 N 1.34777 * 120.00053 * 173.57502 * 7 6 5 10 10 C 1.46928 * 120.63186 * 354.90159 * 9 7 6 11 11 C 1.53191 * 108.77269 * 126.36717 * 10 9 7 12 12 C 1.53035 * 109.34273 * 54.62021 * 11 10 9 13 13 H 1.09002 * 109.45812 * 58.66976 * 12 11 10 14 14 N 1.46505 * 109.46090 * 178.62709 * 12 11 10 15 15 C 1.36938 * 119.99873 * 274.99983 * 14 12 11 16 16 H 1.08001 * 120.00163 * 0.02562 * 15 14 12 17 17 C 1.38810 * 119.99780 * 179.97438 * 15 14 12 18 18 N 1.31619 * 120.00187 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99877 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47162 * 90.00463 * 19 17 15 21 21 H 1.48497 * 109.47173 * 210.00237 * 19 17 15 22 22 H 1.48501 * 109.47441 * 330.00307 * 19 17 15 23 23 C 1.53035 * 109.53865 * 298.68316 * 12 11 10 24 24 H 1.09000 * 109.49455 * 301.34610 * 23 12 11 25 25 C 1.53005 * 109.49766 * 181.28389 * 23 12 11 26 26 C 1.46929 * 120.62947 * 174.87837 * 9 7 6 27 27 O 1.34664 * 106.24191 * 0.22860 * 6 5 4 28 28 N 1.20882 * 111.62833 * 359.58949 * 27 6 5 29 29 H 1.08993 * 109.47211 * 60.00346 * 1 2 3 30 30 H 1.09006 * 109.46900 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47370 * 299.99884 * 1 2 3 32 32 H 1.08999 * 109.47370 * 240.00116 * 2 1 3 33 33 H 1.09007 * 109.47356 * 119.99793 * 2 1 3 34 34 H 1.07998 * 128.09249 * 0.02562 * 5 4 3 35 35 H 1.09003 * 109.58403 * 6.58058 * 10 9 7 36 36 H 1.09002 * 109.58394 * 246.15493 * 10 9 7 37 37 H 1.09005 * 109.49565 * 174.58850 * 11 10 9 38 38 H 1.08997 * 109.49787 * 294.64606 * 11 10 9 39 39 H 0.96991 * 119.99724 * 95.00209 * 14 12 11 40 40 H 0.96996 * 120.00603 * 179.97438 * 18 17 15 41 41 H 1.09003 * 109.46842 * 300.12737 * 25 23 12 42 42 H 1.09004 * 109.46965 * 60.12533 * 25 23 12 43 43 H 1.08996 * 109.46759 * 180.12577 * 25 23 12 44 44 H 1.09001 * 109.58655 * 353.41838 * 26 9 7 45 45 H 1.08996 * 109.58995 * 113.70280 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3518 1.5253 -0.0005 5 6 4.0451 2.7628 -0.0012 6 6 5.3624 2.3989 -0.0009 7 6 6.5301 3.3007 -0.0019 8 8 6.3717 4.5002 -0.1207 9 7 7.7724 2.7947 0.1291 10 6 7.9740 1.3620 0.3851 11 6 8.9329 0.8028 -0.6706 12 6 10.2216 1.6283 -0.6730 13 1 10.6771 1.5931 0.3166 14 7 11.1536 1.0755 -1.6590 15 6 11.9756 0.0354 -1.3161 16 1 11.9367 -0.3777 -0.3190 17 6 12.8583 -0.4887 -2.2505 18 7 12.9054 0.0143 -3.4658 19 14 13.9802 -1.9071 -1.7826 20 1 13.2984 -3.1941 -2.0726 21 1 15.2369 -1.8245 -2.5693 22 1 14.2972 -1.8304 -0.3338 23 6 9.8987 3.0801 -1.0335 24 1 9.4213 3.1142 -2.0128 25 6 11.1916 3.8976 -1.0669 26 6 8.9508 3.6653 0.0181 27 8 5.3812 1.0524 -0.0054 28 7 4.2638 0.5912 -0.0001 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.6292 3.7595 -0.0009 35 1 7.0183 0.8417 0.3229 36 1 8.4031 1.2251 1.3777 37 1 9.1666 -0.2358 -0.4361 38 1 8.4642 0.8572 -1.6532 39 1 11.1883 1.4462 -2.5545 40 1 13.5224 -0.3516 -4.1187 41 1 11.6692 3.8622 -0.0877 42 1 11.8658 3.4809 -1.8153 43 1 10.9609 4.9320 -1.3215 44 1 8.6395 4.6646 -0.2863 45 1 9.4581 3.7181 0.9813 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036119162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:27 Heat of formation + Delta-G solvation = 15.467116 kcal Electronic energy + Delta-G solvation = -27726.750795 eV Core-core repulsion = 23749.193906 eV Total energy + Delta-G solvation = -3977.556889 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.20684 -40.19763 -39.28220 -37.84333 -34.84604 -33.75260 -33.10742 -32.00366 -31.56911 -31.39860 -29.39159 -26.84920 -25.41368 -24.35983 -23.65580 -23.25893 -22.24175 -21.70955 -20.85041 -19.57163 -18.32895 -18.07309 -17.29370 -17.10395 -16.37759 -16.25083 -15.96677 -15.14303 -15.00512 -14.82778 -14.23811 -14.17656 -13.84054 -13.67073 -13.46363 -13.31376 -13.08946 -13.00869 -12.49688 -12.35761 -12.21106 -11.72328 -11.63435 -11.53417 -11.50097 -11.22871 -10.95279 -10.83595 -10.68470 -10.45730 -10.29690 -10.21265 -10.07948 -9.76765 -9.66277 -9.56914 -8.92316 -8.66994 -6.98706 -5.79257 -3.08093 0.56129 1.87563 2.29264 2.34667 2.84162 3.09787 3.41563 3.47043 3.48561 3.82154 4.26994 4.50741 4.51018 4.55873 4.59844 4.82982 4.91141 5.09213 5.17220 5.20508 5.22354 5.32703 5.34387 5.41646 5.49272 5.58798 5.63803 5.69256 5.71543 5.90122 6.01516 6.12695 6.27592 6.29171 6.39811 6.43963 6.56834 6.67832 6.77967 6.87483 7.02179 7.18485 7.67287 7.72008 7.94806 8.38863 9.50484 10.07363 10.42139 11.43165 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015957 B = 0.002878 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.254793 B = 9727.689846 C =11114.358504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.282 6.282 4 C 0.208 3.792 5 C -0.157 4.157 6 C -0.050 4.050 7 C 0.601 3.399 8 O -0.519 6.519 9 N -0.588 5.588 10 C 0.093 3.907 11 C -0.150 4.150 12 C 0.182 3.818 13 H 0.050 0.950 14 N -0.720 5.720 15 C -0.238 4.238 16 H 0.070 0.930 17 C -0.012 4.012 18 N -0.932 5.932 19 Si 0.905 3.095 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.111 4.111 24 H 0.071 0.929 25 C -0.136 4.136 26 C 0.121 3.879 27 O 0.119 5.881 28 N -0.394 5.394 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.189 0.811 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.052 0.948 42 H 0.075 0.925 43 H 0.044 0.956 44 H 0.092 0.908 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.041 4.363 8.878 22.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.189 6.189 4 C 0.010 3.990 5 C -0.180 4.180 6 C -0.116 4.116 7 C 0.385 3.615 8 O -0.395 6.395 9 N -0.319 5.319 10 C -0.030 4.030 11 C -0.191 4.191 12 C 0.072 3.928 13 H 0.068 0.932 14 N -0.360 5.360 15 C -0.369 4.369 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.580 5.580 19 Si 0.736 3.264 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.131 4.131 24 H 0.090 0.910 25 C -0.194 4.194 26 C -0.001 4.001 27 O 0.057 5.943 28 N -0.120 5.120 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.206 0.794 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.110 0.890 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.263 3.745 8.892 22.443 hybrid contribution 0.389 -0.405 -0.171 0.586 sum -19.875 3.340 8.722 21.960 Atomic orbital electron populations 1.21796 0.92122 1.03268 1.03663 1.22852 0.95905 0.80464 1.02616 1.86209 1.13001 1.30376 1.89322 1.21796 0.85830 0.90418 1.00921 1.22146 0.90031 0.99240 1.06548 1.24084 0.96505 0.84340 1.06678 1.16609 0.80958 0.85900 0.77991 1.90851 1.84466 1.13203 1.51024 1.48118 1.05014 1.10567 1.68213 1.22410 1.01629 0.78688 1.00292 1.22694 0.97119 1.01588 0.97741 1.20221 0.89178 0.89188 0.94221 0.93212 1.42397 1.42488 1.39498 1.11620 1.19209 1.12868 1.08124 0.96720 0.91184 1.24729 1.00231 0.99961 0.95931 1.69653 1.40494 1.44016 1.03838 0.86227 0.80308 0.82449 0.77406 1.21787 1.21848 1.20787 1.21769 0.95743 0.97043 0.98559 0.91017 1.21659 0.96809 0.98024 1.02872 1.21873 0.84219 0.94110 0.99904 1.85129 1.21964 1.18658 1.68598 1.74005 0.90934 1.22688 1.24411 0.91311 0.89897 0.91360 0.91403 0.91467 0.79361 0.88712 0.90629 0.90176 0.91986 0.78183 0.93513 0.92933 0.90615 0.93718 0.88969 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.28 37.15 0.38 -0.47 16 2 C 0.06 0.47 6.38 37.15 0.24 0.71 16 3 O -0.28 -3.09 10.21 -18.89 -0.19 -3.28 16 4 C 0.21 2.53 8.00 -16.72 -0.13 2.40 16 5 C -0.16 -1.83 10.97 -38.77 -0.43 -2.26 16 6 C -0.05 -0.65 6.96 -36.36 -0.25 -0.90 16 7 C 0.60 8.44 7.69 -12.47 -0.10 8.35 16 8 O -0.52 -8.32 16.35 5.30 0.09 -8.23 16 9 N -0.59 -7.94 2.97 -173.99 -0.52 -8.46 16 10 C 0.09 1.21 6.34 -3.71 -0.02 1.18 16 11 C -0.15 -2.44 5.66 -26.61 -0.15 -2.59 16 12 C 0.18 3.29 2.19 -67.89 -0.15 3.14 16 13 H 0.05 0.91 8.08 -51.93 -0.42 0.50 16 14 N -0.72 -16.78 4.41 -53.39 -0.24 -17.02 16 15 C -0.24 -6.24 9.93 -15.06 -0.15 -6.39 16 16 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 17 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 18 N -0.93 -27.34 13.06 55.49 0.72 -26.61 16 19 Si 0.90 21.81 29.55 -169.99 -5.02 16.79 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C -0.11 -1.72 2.46 -90.50 -0.22 -1.94 16 24 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 25 C -0.14 -2.07 9.03 37.16 0.34 -1.74 16 26 C 0.12 1.61 5.70 -3.71 -0.02 1.59 16 27 O 0.12 1.55 7.79 15.49 0.12 1.67 16 28 N -0.39 -5.16 11.50 30.47 0.35 -4.81 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.19 1.83 8.06 -52.49 -0.42 1.41 16 35 H 0.10 1.18 3.84 -54.48 -0.21 0.98 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.38 9.70 7.51 -40.82 -0.31 9.40 16 40 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.07 1.38 7.37 -51.93 -0.38 1.00 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.09 1.23 7.04 -51.93 -0.37 0.87 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 369.99 15.07 5.58 5.58 Total: -1.00 -30.34 369.99 -6.60 -36.94 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -6.73 Total: 6.80 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -0.77 Total: 0.63 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 0.32 Total: -56.89 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.01 Total: -9.85 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.34 -6.60 -36.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036119162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.407 kcal (2) G-P(sol) polarization free energy of solvation -30.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds